mRNA_Ecto-sp13_S_contig781.19065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig781.19065.1
Unique NamemRNA_Ecto-sp13_S_contig781.19065.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig781.19065.1 vs. uniprot
Match: D8LKG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG6_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 9.180e-83
Identity = 146/158 (92.41%), Postives = 149/158 (94.30%), Query Frame = 1 
Query:    1 KAYEDGVSWASVGLAAQARSILHLFAVVITGMGCGPVTVLVRSAGLRGAFLTAVAFQATCLLIAAFLRPGPAAPALSLVLLAALGVPLALAESLPYMMVGMFSPRETHGQLLGKLNVWIVLAQLALTLCVHPIVKHSEDGDASVLLAGALAAAVGVAF 474
            +AYEDGVSWASVGLAAQA        VVITGMGCGPVT+LVRSAGLRGAFLTAV FQATCLLIAAFLRPGPAAPALSLVLLAALGVPLALAESLPYMMVGMFSPRETHGQLLGKLNVWIVLAQLALTLCVHPIVKHSEDGDASVLLAGA+AAAVGVAF
Sbjct:  316 QAYEDGVSWASVGLAAQA--------VVITGMGCGPVTLLVRSAGLRGAFLTAVVFQATCLLIAAFLRPGPAAPALSLVLLAALGVPLALAESLPYMMVGMFSPRETHGQLLGKLNVWIVLAQLALTLCVHPIVKHSEDGDASVLLAGAIAAAVGVAF 465
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BLAST of mRNA_Ecto-sp13_S_contig781.19065.1 vs. uniprot
Match: A0A7S2UUK4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUK4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.730e-15
Identity = 63/160 (39.38%), Postives = 87/160 (54.37%), Query Frame = 1 
Query:    7 YEDGVSWASVGLAAQARSILHLFAVVITGMGCGPVTVLVRSAG-LRGAFLTAVAFQATCLLIAAFLRPG-----PAAPALSLVLLAALGVPLALAESLPYMMVGMFSPRETHGQLLGKLNVWIVLAQLALTLCVHPIVKHSEDGDASVLLAGALAAAVGV 468
            Y+DGV W+S+G A QA        VV+  +G GP+  +++  G L  A   +V  QA    +  FL P      P+A AL LV L  LG+P AL  ++PY+MV   S    HG LLG+LNV++VLA+L +TL VHPI           +L G +  A G+
Sbjct:  201 YQDGVRWSSIGWAVQA--------VVVILLGAGPLERMIKGVGGLVPALGWSVRSQAALTCMVLFLPPVTRLALPSAKALVLVQLGLLGLPFALIHTVPYVMVAKSSGPSQHGHLLGRLNVYVVLAELFITLTVHPISSIFPGNTLVEILLGIVVTASGL 352
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig781.19065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKG6_ECTSI9.180e-8392.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UUK4_9STRA1.730e-1539.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig781contigEcto-sp13_S_contig781:18044..21428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score234.2
Seed ortholog evalue4.6e-59
Seed eggNOG ortholog2880.D8LKG6
Model size941
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.sucrose transmembrane transporter activity
EggNOG OGsKOG0637@1,KOG0637@2759
Ec32 ortholog descriptionMajor facilitator superfamily domain
Ec32 orthologEc-16_002890.1
Cds size513
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig781.19065.1prot_Ecto-sp13_S_contig781.19065.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig781 18379..20484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464051.8656852-UTR-Ecto-sp13_S_contig781:18043..183781681464051.8656852-UTR-Ecto-sp13_S_contig781:18043..18378Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig781 18044..18378 -
1681464051.9292035-UTR-Ecto-sp13_S_contig781:20484..205021681464051.9292035-UTR-Ecto-sp13_S_contig781:20484..20502Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig781 20485..20502 -
1681464051.9402683-UTR-Ecto-sp13_S_contig781:21353..214281681464051.9402683-UTR-Ecto-sp13_S_contig781:21353..21428Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig781 21354..21428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464051.8788974-CDS-Ecto-sp13_S_contig781:18378..185091681464051.8788974-CDS-Ecto-sp13_S_contig781:18378..18509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig781 18379..18509 -
1681464051.888727-CDS-Ecto-sp13_S_contig781:18905..190221681464051.888727-CDS-Ecto-sp13_S_contig781:18905..19022Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig781 18906..19022 -
1681464051.8988354-CDS-Ecto-sp13_S_contig781:19558..196981681464051.8988354-CDS-Ecto-sp13_S_contig781:19558..19698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig781 19559..19698 -
1681464051.912244-CDS-Ecto-sp13_S_contig781:20359..204841681464051.912244-CDS-Ecto-sp13_S_contig781:20359..20484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig781 20360..20484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig781.19065.1

>prot_Ecto-sp13_S_contig781.19065.1 ID=prot_Ecto-sp13_S_contig781.19065.1|Name=mRNA_Ecto-sp13_S_contig781.19065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MGCGPVTVLVRSAGLRGAFLTAVAFQATCLLIAAFLRPGPAAPALSLVLL
AALGVPLALAESLPYMMVGMFSPRETHGQLLGKLNVWIVLAQLALTLCVH
PIVKHSEDGDASVLLAGALAAAVGVAFVPAIGREEPVLAPPAQRLSSPSA
ACGALDECVSSPRRVLLERE*
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mRNA from alignment at Ecto-sp13_S_contig781:18044..21428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig781.19065.1 ID=mRNA_Ecto-sp13_S_contig781.19065.1|Name=mRNA_Ecto-sp13_S_contig781.19065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3385bp|location=Sequence derived from alignment at Ecto-sp13_S_contig781:18044..21428- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCTTACGAGGACGGCGTTTCGTGGGCATCCGTGGGTCTGGCGGCACA
GGCAAGGAGCATATTACATCTGTTCGTGCTTCTCGACGTGTTGGCACGCG
AAAGCCGGGTTACGCGTGCACACGTCCCACCCCTACCTCACTCTCGCGTA
TAACTTTTCGATGGGAACAAGCGGAATGACCGAACATCAATGCGTGTCGT
CGGGAGAAGATCTCATTTACATGTTGCGCTGAAGGTTTTGAGCGCTGCTC
GAATAGGCTTCGAACGATGCCACTCTTGCCGTTTCGGGATGTATTTGCCC
TCTTTTTCGGGCTGGCAACTATTTATATTCTTTGTCCGTTGATGGGGTGC
CTGTTGCTCGGTCTTGGCTGAGGCCTTCAGCGTGGGTTGTTGTTGTTGTT
GTTGTTTCTCACATGAGCTCTTAGTCCACAAAAAATGAGGAGCCCGTGGT
CTCAAAACCCGGCGCATACGACGCCGCGGGGCAACAAAACAAAAAAAGGG
TACAAACCACACGGAAAAAACAAAATGATAGAAAGAAAAGAAAGCTACCG
CACCGACCGGTTGAGACAAGAGCCCTCGGAGACCGATCAAAACAAAAACA
GGGTGTACGTCGACCGTTGTGTGGATGTGGGCGTCAGGAATTGTCCGCAC
CATAAAAAAGCGCCCACGACTCCGTTTCCCCGTGTACCGTGATCCACATC
GCGGGCAGACCAGGTACACTTTGATGATCCCACCGACAGAGGTTGGCATA
CGTGTCACTTTGATACCTATTCTGGCGGCGATCTGTCAGCCGACAGTTTG
TACGACATGCCGATAACACAAATGACGACCATTTTTGTTTGTTTCGCCCT
TGCCTCTTCACGTTTGGCCTATCCTTCACGCATACCACCACACCACACCA
CACTGCCATACGCGTCGCCGCGATAGGCGGTCGTGATTACCGGAATGGGC
TGTGGGCCGGTGACCGTCCTAGTTAGGTCGGCGGGGCTCAGAGGCGCCTT
CCTGACGGCGGTCGCGTTCCAAGCGACCTGTCTCCTGATCGCGGCGTTCT
TGAGACCGGGCCCGGCAGCGTGAGTGGCTCCCGTTCAGTTTCCTCCCGCT
GAGCTGAAGAGTGATTATGATCGTCGTACCATGTAATCTTTGTCTCTCTC
TGTTTCTCTCGAAGATCATGGCGAACATGAAGCATAGGAATAAATGTCCT
CGTTGGGTGATTCGTTTCGGCATGTCTCTTTGGCCTTCATTGTCCTTTGT
CGAGACGTCCACGCGAGGCAGCTTGAGCACAGCGCGCGAGATTTTGAGTT
TCGTGCTTGGTTTCTGATGCTTCCACCCCTTTCTCTTGTTGCTCCGCAAT
GCACGGGCCAAGAAACGCACAGCAGTAGAATGCATCGTGAACCGTTAGGA
CGTGGTGCAGAGGTACAACGCGAGGGTTGTGTACACGTCACGCCGGCGCC
AAGGACAAGCCATGCAGCTGCGTTTCGTGGTGTGCTACTAACCCGCTACG
CACCAACACCGCCCCCCTTTGTGGAGTTCATATTCTGTACTCGTGTCCGG
TGGTTTTCGTTGCCCTCGGTGTCTCACTGTCGCCCATGAATGCTCGAGTT
CGGCTGCACCCTCATACTATACGATGCTGGGGGATTTCAAACCCGTGAAG
TTGGGCTCCTGCCTCCACATATGCCGTCCCTCTCGCGCTCCATGCCCGTT
GCTTCGCTCTACACGCTGCTGCTGCTGCAGGCCGGCCTTGTCGCTCGTGC
TCTTGGCAGCTCTAGGGGTGCCGCTGGCCTTGGCGGAAAGCCTCCCGTAC
ATGATGGTGGGCATGTTCAGCCCGCGGGAAACACACGGCCAGTTGTTGGG
AAAGCTGAACGTCTGGATAGGTAAGCAAAAGCGTGAGATACTCAGCCCAT
GCCCGCGGGGGCACGACGCTCAAAGAGAATCCGAATGTATTTGGAACCGA
TCGGCGTCAGGGTGCTGCTTTTTATGCATGTTGACTTTCGTCAAGTCAGT
TTTTGGTGTTCCACCGATGAGCATTCTTGTTCTGAGGGTTACGAAACAGT
GTTTTTGAGACAGGACGGCCGTCCACTCAAGCCATTATCCCCTTGCTATT
CCGTATCGGTGTGTACGGGTTGACCGAACTGCTTCTTGGGGAGATAACCT
GTGGACTGCGGAGATGTACAATTGTATGGTGTTCTTGATACGAACGGAGA
GATTTGTCTCGGCCACAAATGAAAGTCACAAATGTCGAGGGTGTCTTACG
TTGATTCTGGCAAACTACCAACAAACGAAGCCGAGGATACGTGGCCTCGA
AAGACCATGAACAATGCGACACTCATCGCAACGTCAGACATCTTAATCCT
CTCGTCCCGTTTGTTATCGCTCTCGGTGGCGGTTGCCCTATTTTCCTGTC
CTTCAGTCCTGGCTCAGCTGGCGTTGACGCTATGCGTCCACCCCATTGTC
AAGCATTCCGAAGATGGGGATGCCTCGGTGCTGCTAGCGGGTGCGCTTGC
GGCAGCGGTCGGTGTCGCATTCGGTGCGTTCATATTACGGTAAAAGGGAG
GCCGAGAGGTCAATACATGGTAGGCCCAACAGTCTTCGGCCTTGCGTCAG
CACGTCAGCACAATCGTGCGAAGTGTATTTTTTGGTGTTCGCAAACGCTT
ACAATCAAGCGCGAGCCGTGTACACCATATTCTCGAACTTATTACGGACG
GAAAACGTTCACAATTTAGAGCGTTCTTCTTGTTCCGCTTGTGCAGGTGA
TGGTTTCTGTCGTTGGGTCGGCTCTTTTATCAGGGTGCTATTCTTGCGTA
CCTCGTGGATGCCCCTTCCGTTGAGACCAATGAACCGATTGTCACCGCAC
CGGCTTGTTTTCTTTTTCTTTTCTGGTGAATAACAAAACTTGTTGTTGCA
TCCGATACTAAACATTCAGTCCCAGCCATCGGAAGAGAAGAGCCGGTCCT
AGCACCACCTGCACAGCGTCTTTCGTCACCTTCCGCGGCGTGCGGGGCCC
TGGACGAATGTGTGTCGTCTCCTCGTCGAGTCCTCTTGGAACGGGAATGA
CAGTGGATCAACTTTCCATTGGCGTCAAAACGAGGTTTACAAGGATACGT
TAGACTAGACGTGAAAGATGTTTTTGCAAGGAGGTGGCTAGCCGGTGTGC
GTAGGCACGTCCGACCGGGGATTCGGTTACGAGCTGAGAAGTACATCCCA
TCTTACTGAAATACAGTCGCAGACGCGACGTAGTGCTGTCTTTTGAAGAG
GAGATGCAAAGAGTTAAGGGTGTAGAAAAGACGTTCCTGGTGCGCGAGCT
CTGGTTTTACCTGTAATCGTCTGTGCATTCAGACATGATGCATTATCCCC
GGCAGAAACACAACTACATACCATGCGCTTAGGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig781:18044..21428-

>mRNA_Ecto-sp13_S_contig781.19065.1 ID=mRNA_Ecto-sp13_S_contig781.19065.1|Name=mRNA_Ecto-sp13_S_contig781.19065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig781:18044..21428- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTGTGGGCCGGTGACCGTCCTAGTTAGGTCGGCGGGGCTCAGAGG
CGCCTTCCTGACGGCGGTCGCGTTCCAAGCGACCTGTCTCCTGATCGCGG
CGTTCTTGAGACCGGGCCCGGCAGCGCCGGCCTTGTCGCTCGTGCTCTTG
GCAGCTCTAGGGGTGCCGCTGGCCTTGGCGGAAAGCCTCCCGTACATGAT
GGTGGGCATGTTCAGCCCGCGGGAAACACACGGCCAGTTGTTGGGAAAGC
TGAACGTCTGGATAGTCCTGGCTCAGCTGGCGTTGACGCTATGCGTCCAC
CCCATTGTCAAGCATTCCGAAGATGGGGATGCCTCGGTGCTGCTAGCGGG
TGCGCTTGCGGCAGCGGTCGGTGTCGCATTCGTCCCAGCCATCGGAAGAG
AAGAGCCGGTCCTAGCACCACCTGCACAGCGTCTTTCGTCACCTTCCGCG
GCGTGCGGGGCCCTGGACGAATGTGTGTCGTCTCCTCGTCGAGTCCTCTT
GGAACGGGAATGA
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