mRNA_Ecto-sp13_S_contig78093.19063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78093.19063.1
Unique NamemRNA_Ecto-sp13_S_contig78093.19063.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: D7FL32_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL32_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.020e-37
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVNTGIDGLLGMGKAHRSR 201
            GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVNTGIDGLLGMGKAHRSR
Sbjct:  387 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVNTGIDGLLGMGKAHRSR 453
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: A0A482SKL0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKL0_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 1.090e-15
Identity = 31/51 (60.78%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVN 153
            G+ RGLPGVYFYYEVSP+QA +EEK++ ++ FLT  C +VGG YT++GL++
Sbjct:  316 GSGRGLPGVYFYYEVSPIQAFIEEKKRSWMHFLTSVCAIVGGAYTVMGLLD 366
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: A0A7S3H281_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H281_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.370e-15
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVNTGIDGLL 174
            G+ RGLPGVYF+YEVSP+QAL EEKR G L F+T  C +VGG ++++GLV+  +  +L
Sbjct:  350 GSGRGLPGVYFHYEVSPIQALFEEKRGGMLGFITSCCAIVGGAFSVMGLVDVFLGAVL 407
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: A0A7S2B099_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B099_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.030e-14
Identity = 29/52 (55.77%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVNT 156
            GT RGLPGV+F+YEVSPV A+ EE ++ F+ F+T  C ++GGV+T++G V+T
Sbjct:  197 GTGRGLPGVWFFYEVSPVHAVFEETKRSFMEFITSVCAILGGVFTVMGFVDT 248
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: A0A7S1BW07_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BW07_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.050e-13
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVN 153
            G+ RG+PGV+F+YEVSP   + EEKR+G+  F T  C +VGGVYT+LG+++
Sbjct:  348 GSGRGMPGVFFFYEVSPFHVIFEEKRRGYFRFFTSICAIVGGVYTVLGMID 398
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: A0A7S1FY63_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY63_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.700e-13
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVN 153
            G+ RG+PGV+F+YEVSP   + EE R+G++ F T  C +VGGVYT+LG+++
Sbjct:  346 GSGRGMPGVFFFYEVSPFHVIFEENRRGWIRFFTSVCAIVGGVYTVLGMID 396
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: A0A836C905_9STRA (Endoplasmic reticulum vesicle transporter-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C905_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.170e-13
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVN 153
            G+ RGLPGVY YYE+S + A +EE R G L FLT  C +VGG+YT+LGL++
Sbjct:  357 GSGRGLPGVYLYYELSTITASIEELRPGLLKFLTSVCAIVGGLYTVLGLID 407
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: A0A7S2W0R9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0R9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 9.140e-13
Identity = 30/51 (58.82%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVN 153
            G+ RGLPGV+F+YEVSPVQA  EE R+G L F+   C ++GGV+TI+GL +
Sbjct:  322 GSGRGLPGVWFFYEVSPVQATFEETRQGTLEFIASVCAILGGVFTIIGLAD 372
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: A0A7S3XRN1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRN1_HETAK)

HSP 1 Score: 69.7 bits (169), Expect = 9.340e-13
Identity = 28/54 (51.85%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVNTGI 162
            G++RGLPGVYF+YE+S +QA  EE+R G L FLT A  ++GG++T++G  ++ I
Sbjct:  173 GSNRGLPGVYFFYEMSAIQAQFEERRPGILVFLTSALAIIGGIFTVMGFFDSAI 226
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Match: A0A7S1CIR7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIR7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.360e-12
Identity = 31/66 (46.97%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    4 TSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLVNTGIDGLLGMGKAHRSR 201
            T+ GLPGV+ +YE+SP++A + E+ + FL FLT  C +VGGV+T+LGLV+  + G++   + +RSR
Sbjct:  398 TTEGLPGVFVFYELSPIRASLREEARSFLHFLTRVCAIVGGVFTVLGLVDQAVHGIVD--RINRSR 461
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78093.19063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL32_ECTSI3.020e-37100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A482SKL0_9ARCH1.090e-1560.78Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3H281_9STRA2.370e-1556.90Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2B099_9STRA3.030e-1455.77Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1BW07_9STRA1.050e-1354.90Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1FY63_9STRA3.700e-1352.94Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A836C905_9STRA5.170e-1358.82Endoplasmic reticulum vesicle transporter-domain-c... [more]
A0A7S2W0R9_9STRA9.140e-1358.82Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XRN1_HETAK9.340e-1351.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1CIR7_9STRA1.360e-1246.97Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78093contigEcto-sp13_S_contig78093:30..233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score139.8
Seed ortholog evalue4.7e-31
Seed eggNOG ortholog2880.D7FL32
Preferred nameERGIC3
Model size204
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K20365,ko:K20367
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0030134,GO:0030135,GO:0030173,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098827
Exons1
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG0445@1,KOG2667@2759
EC2.7.1.68
Cds size204
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464051.61062-CDS-Ecto-sp13_S_contig78093:29..2331681464051.61062-CDS-Ecto-sp13_S_contig78093:29..233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78093 30..233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78093.19063.1prot_Ecto-sp13_S_contig78093.19063.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78093 30..233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78093.19063.1

>prot_Ecto-sp13_S_contig78093.19063.1 ID=prot_Ecto-sp13_S_contig78093.19063.1|Name=mRNA_Ecto-sp13_S_contig78093.19063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
GTSRGLPGVYFYYEVSPVQALVEEKRKGFLAFLTGACGVVGGVYTILGLV
NTGIDGLLGMGKAHRSR*
back to top

mRNA from alignment at Ecto-sp13_S_contig78093:30..233+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78093.19063.1 ID=mRNA_Ecto-sp13_S_contig78093.19063.1|Name=mRNA_Ecto-sp13_S_contig78093.19063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78093:30..233+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACTTCTCGAGGGCTGCCGGGAGTGTACTTCTACTACGAGGTTTCCCC
TGTGCAGGCGTTAGTCGAGGAGAAGAGAAAAGGCTTCCTAGCATTTCTCA
CGGGGGCGTGCGGGGTGGTGGGTGGAGTTTACACCATCTTGGGGTTGGTG
AACACGGGGATTGACGGCTTGCTGGGCATGGGGAAGGCGCACCGATCGAG
ATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78093:30..233+

>mRNA_Ecto-sp13_S_contig78093.19063.1 ID=mRNA_Ecto-sp13_S_contig78093.19063.1|Name=mRNA_Ecto-sp13_S_contig78093.19063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78093:30..233+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACTTCTCGAGGGCTGCCGGGAGTGTACTTCTACTACGAGGTTTCCCC
TGTGCAGGCGTTAGTCGAGGAGAAGAGAAAAGGCTTCCTAGCATTTCTCA
CGGGGGCGTGCGGGGTGGTGGGTGGAGTTTACACCATCTTGGGGTTGGTG
AACACGGGGATTGACGGCTTGCTGGGCATGGGGAAGGCGCACCGATCGAG
ATAG
back to top