mRNA_Ecto-sp13_S_contig7809.19062.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7809.19062.1 vs. uniprot
Match: D7FKB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKB5_ECTSI) HSP 1 Score: 1317 bits (3409), Expect = 0.000e+0 Identity = 723/848 (85.26%), Postives = 743/848 (87.62%), Query Frame = 1
Query: 1 RKPKGKFFTPIPGFVVKASLQRPWAPPPSAVDGG---GMGKVVENAAVGTKVFINLCEHEGVTPPIDQARDRKSHITDRPVDVTKEGRNASGLRIPMFVSRVRETTDHSGERALAVDVVFHPWVLRCSKVEPRFRDQVVALAAGWITKEHPGLVVSQRRKLLKLCTYKGGDGAKGGTPVPFPAGDASSQADPLEERTRGSGGEPAAGVGDGSGVGGGGLLDDPKSLLAAIRSSEPDGESGEGGNGHNKEGKHEVATASAVEGGPTGREEGGGLPGVLGLNAHGGYRKGGRNGNASATRDILLPGALAGLASDSGDKKKRENSLNEGRRGPLISEIVPDTSTP-ARAGDGGEALSQVSDDSRVFDGCPGQQPGAKRKIGGKSAPIVKKGFLSSSKVGRKAGRERAPLYPPGGSENGAEPSAYAKLMSRCKVVDTRDHSKEEMDGAMKAHAGGGAPLRPASQTPEPKPSHTTTAGRAGRKPAASAAVKTGFLGAGVGRGGIKGEEGGGRGNARGRSSKVDREYERLVALADPEMGDGAGGKSSHAGEDDPMTEQLAQLAKILGPAAPLPETPLGPGCATDSSSSSSTPPSPSVAAPKASNLAADVTGDTILPSRSARQPEGEADGGVDDSYAARNKLPTSAPNQGSEEGRQATLAREALATMTTSSTTEMEGQPPLPAPAPTNTVSPAGVEDAEGSRSCRHNQQLSREASPPAVSAAARKEREPAYRIEELVSRTSEDPRSGSDDGGGGGKAKRAFQVTIDLPETEESAGSKQGKQAGGTTNTRSSGTAGKRTGPSLSDVELDVSPAFLQLNVPGKYQLRLEMPCVVDEDSVTAKFSKSQAVLKVSIREK 2532
RKPKGKFFTPIPGFVVKASLQRPWAP PSAVDGG G GKVVENAAVGTKVFINLCEHEGV+PPIDQ TD PVDVTKEGRNASGLRIPMFVSRVRETTDHS ERALAVDVVFHPWVLRCSK EPRFRDQVVALAAGWITKEHPGLVVSQRRKLLKLCTYKGGDGAKGGTPVPFPAGDASSQADPLEERTRGSGG P LLDDPKSLLAAIRSSEPDGESG GGNG +KEGK EVATAS V+GGPTGR EG G+PG LGLNAHGGYRKGG N NASATRDILLPGALAGLASDSGD+K+ EN LNEGRRGPLISEIVPDTST ARAGDGGEAL QVSDDSR DGC GQ+PG +RK+G KSAP+VKKGFLSS KVG KAG ERAPLYPPGGSENGAEPSAYAKLMSRCKVVDTRDHSKEEMD AMKAHAGGGAPLRPASQTPEP TAGRAGRKPAASAAVK GFLGAGVGRG IKGEEGGGRG+ARGRSSKVDREYERLVALADPEMGDG GGK SH GE+DPMTEQLAQLAKILGPAAPLPETP GPGCAT SSSS T PS SVA PKASNLAAD TGDT+ PSR S AARNKLPTSAPNQGSEEGRQA LAREA+A +TT+ TTEMEGQPPLPAPAPTNTVSPAGVEDAEGSRSCRH Q LS PAVSAAA KEREP YRIEELVSRTSED RSGSD+GGGG KAKRAFQVTIDLPE +ESAG+KQGKQAGGTT+TRSSGTAGKRTGPSLSDVELDVSPAFLQLNVPGKYQLRLEMPCVVDEDSVTAKFSKSQAVLKVSIREK
Sbjct: 86 RKPKGKFFTPIPGFVVKASLQRPWAPLPSAVDGGVGGGTGKVVENAAVGTKVFINLCEHEGVSPPIDQ--------TDSPVDVTKEGRNASGLRIPMFVSRVRETTDHSDERALAVDVVFHPWVLRCSKGEPRFRDQVVALAAGWITKEHPGLVVSQRRKLLKLCTYKGGDGAKGGTPVPFPAGDASSQADPLEERTRGSGGGPXXXXXXXXXXXXXXLLDDPKSLLAAIRSSEPDGESGVGGNGDSKEGKQEVATASTVDGGPTGRGEGDGIPGALGLNAHGGYRKGGGNRNASATRDILLPGALAGLASDSGDRKRTENGLNEGRRGPLISEIVPDTSTTTARAGDGGEALRQVSDDSRAVDGCQGQEPGVERKVGKKSAPVVKKGFLSSFKVGGKAGLERAPLYPPGGSENGAEPSAYAKLMSRCKVVDTRDHSKEEMDAAMKAHAGGGAPLRPASQTPEPXXXXXXTAGRAGRKPAASAAVKKGFLGAGVGRGRIKGEEGGGRGDARGRSSKVDREYERLVALADPEMGDGTGGKPSHGGEEDPMTEQLAQLAKILGPAAPLPETPFGPGCATASSSSXXTRPSTSVAVPKASNLAADATGDTLPPSRXXXXXXXXXXXXXXXSCAARNKLPTSAPNQGSEEGRQAILAREAVAPVTTAPTTEMEGQPPLPAPAPTNTVSPAGVEDAEGSRSCRHTQPLS-----PAVSAAALKEREPVYRIEELVSRTSEDARSGSDNGGGGRKAKRAFQVTIDLPEMKESAGTKQGKQAGGTTSTRSSGTAGKRTGPSLSDVELDVSPAFLQLNVPGKYQLRLEMPCVVDEDSVTAKFSKSQAVLKVSIREK 920
BLAST of mRNA_Ecto-sp13_S_contig7809.19062.1 vs. uniprot
Match: A0A6H5KE96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE96_9PHAE) HSP 1 Score: 1257 bits (3252), Expect = 0.000e+0 Identity = 703/866 (81.18%), Postives = 728/866 (84.06%), Query Frame = 1
Query: 1 RKPKGKFFTPIPGFVVKASLQRPWAPPPSAVDGG---GMGKVVENAAVGTKVFINLCEHEGVTPPIDQARDRKSHITDRPVDVTKEGRNASGLRIPMFVSRVRETTDHSGERALAVDVVFHPWVLRCSKVEPRFRDQV-----------------VALAAGWITKEHPGLVVSQRRKLLKLCTYKGGDGAKGGTPVPFPAGDASSQADPLEERTRGSGGEPAAGVGDGSGVGGGGLLDDPKSLLAAIRSSEPDGESGEGGNGHNKEGKHEVATASAVEGGPTGREEGGGLPGVLGLNAHGGYRKGGRNGNASATRDILLPGALAGLASDSGDKKKRENSLNEGRRGPLISEIVPDTSTPARAGDGGEALSQVSDDSRVFDGCPGQQPGAKRKIGGKSAPIVKKGFLSSSKVGRKAGRERAPLYPPGGSENGAEPSAYAKLMSRCKVVDTRDHSKEEMDGAMKAHAGGGAPLRPASQTPEPKPSHTTTAGRAGRKPAASAAVKTGFLGAGVGRGGIKGEEGGGRGNARGRSSKVDREYERLVALADPEMGDGAGGKSSHAGEDDPMTEQLAQLAKILGPAAPLPETPLGPGCATDSSSSSSTPPSPSVAAPKASNLAADVTGDTILPSRSARQPEGEADGGVDDSYAARNKLPTSAPNQGSEEGRQATLAREALAT--MTTSSTTEMEGQPPLPAPAPTNTVSPAGVEDAEGSRSCRHNQQLSREASPPAVSAAARKEREPAYRIEELVSRTSEDPRSGSDDGGGGGKAKRAFQVTIDLPETEESAGSKQGKQAGGTTNTRSSGTAGKRTGPSLSDVELDVSPAFLQLNVPGKYQLRLEMPCVVDEDSVTAKFSKSQAVLKVSIREK 2532
RKPKGKFFTPIPGFVVKASLQRPWA PPSAVDGG G GKVVENAAVGTK TDRPVDVTKEGRNASGLRIPMFVSRVRETTDHS ERALAVDVVFHPWVLRCSK EPRFRDQV VALAAGWITKEHPGLVVSQRRKLLKLCTYKGG GAKGGTPVPFPAGDASSQADPLEERTRGSGG LLDDPKSLLAAIRSSEPDGE+G+GGNGHNKEG E ATASAVEGGPTGREEG G+PG LGL+ GGYRKG NG+A ATRDILLPGALAGLASDSGD+K+REN LNEGRRGPLISEIVPDTSTPA AGD GEALS VSD+S+VFDGCPGQ+PGAKRK+GGKSAP+VKKGFLSSSKVG GRERAPLYPPGGSENGAEPSAYAKLMSRCKVVDTRDHSKEE+D AMKAHAGGGAPLRPASQTPE KPS T TAG A RKPAASAAVK F GAG GRG +KGE RGRSSKVDREYERLVALADPEMGDGAGGKSSH GEDDPMTEQLAQLAKILGPAAPLPETPLGPGCAT SS SSST PS SVA P+ASNLA D TGDT PS SA+Q EG +GG D S AR KLPTSAPNQGSEEG QATLAREA+A +TT+ TTEMEGQPPLPAPAPTNTVS G EDAEGSRSCRH Q LS+EASPPAVSAAARKEREP YRIEELVSRTSED RSGSD+ G G KAKRAFQVTIDLPE +ESAGSKQG+QAGGTT+TRSSGTAGKRTGPSLSDVELDVSPAFLQLNVPGKYQLRLEMPCVVDEDS TAKFSKSQAVLKVSIREK
Sbjct: 32 RKPKGKFFTPIPGFVVKASLQRPWAAPPSAVDGGFGGGTGKVVENAAVGTK-------------------------TDRPVDVTKEGRNASGLRIPMFVSRVRETTDHSDERALAVDVVFHPWVLRCSKREPRFRDQVRIWLRAGSPRSPSLCVVVALAAGWITKEHPGLVVSQRRKLLKLCTYKGGGGAKGGTPVPFPAGDASSQADPLEERTRGSGGXXXXXXXXXXXXXXXXLLDDPKSLLAAIRSSEPDGETGDGGNGHNKEGNQEAATASAVEGGPTGREEGAGIPGALGLDVDGGYRKGVGNGDALATRDILLPGALAGLASDSGDRKRRENRLNEGRRGPLISEIVPDTSTPAPAGDEGEALSHVSDNSKVFDGCPGQEPGAKRKVGGKSAPVVKKGFLSSSKVGGGKGRERAPLYPPGGSENGAEPSAYAKLMSRCKVVDTRDHSKEEVDAAMKAHAGGGAPLRPASQTPESKPSPTPTAGCARRKPAASAAVKKRFHGAGNGRGEVKGEXXXXXXXXRGRSSKVDREYERLVALADPEMGDGAGGKSSHGGEDDPMTEQLAQLAKILGPAAPLPETPLGPGCATASSFSSSTRPSSSVAVPQASNLAVDATGDTSPPSCSAKQSEGGVNGGADGSRVARIKLPTSAPNQGSEEGCQATLAREAVAVAPVTTAPTTEMEGQPPLPAPAPTNTVSRTGAEDAEGSRSCRHTQPLSQEASPPAVSAAARKEREPVYRIEELVSRTSEDARSGSDNDGEGRKAKRAFQVTIDLPEMKESAGSKQGQQAGGTTSTRSSGTAGKRTGPSLSDVELDVSPAFLQLNVPGKYQLRLEMPCVVDEDSATAKFSKSQAVLKVSIREK 872
BLAST of mRNA_Ecto-sp13_S_contig7809.19062.1 vs. uniprot
Match: A0A835Z9R8_9STRA (PIH1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9R8_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 5.510e-15 Identity = 111/404 (27.48%), Postives = 155/404 (38.37%), Query Frame = 1
Query: 118 VENAAVGTKVFINLCEHEGVTPPIDQARDRKSHITDRPVDVTKEGRNASGLRIPMFVSRVRETTDHSGERALAVDVVFHPWVLRCSKVEPRFRDQVVALAAGWITKEHPGLVVS--------------QRRKLLKLCTYKGGDGAKGGTPVPFPAGDASSQADPLEERTRGSGGEPAAGVGDGSGVGGGGL---LDDPKSLLAAIRSSEPDGESGEGGNGHNKEGKHEVATASAVEGGPTGREEGGGLPGVLGLNAHGGYRKGGRNGNASATRDILLPGALAGLASDSGDKKKRENSLNEGRRGPLISEIVPDTSTPARAGDGGEALSQVSDDSRVFDGCPGQQPGAKRKIGGKSAPIVKKGFLSSSKVGRKAGRERAPLYPPGGSENGAEPSAYAKLMSRCKV 1278
++ A GT+V++N+ H G+ P D R+ D T +A GL++P+ VS +R T G +AVDVV HPWVLRC F + LA W+ E G + +R ++++ Y G G GG P+ FP A++Q+ P +R+ +D P LLAA+ + G+ V + LGL + G +G SA ++ +PG A D G K GR GP+I E+ A AG GG GAKR GK P+VKKGFL+ + + LYP G SE G Y K MSRCK
Sbjct: 102 LDACAAGTRVYVNVTSHVGIEPAQDVLRNALG-------DETPLRDSADGLQVPLLVSPLRPATSGGGG-GVAVDVVVHPWVLRCCLASGTFLAMLTELALQWVEAERGGAAAASTLDHKGPDAAQLDRRWRVVEGRAYVHGGGGDGGEPLRFPLEGAAAQSRPPSQRSAAXXXXXXXXXXXXXXXXXXXXXRSIDTPAGLLAAMACDGSXXXXXXXXXXXXRSGEGSVLQS-------------------LGL------QNVGSSGGKSAM-EVRMPGQRARSEGDKGAK---------GRSGPIIEEVG------AGAGKGG---------------------GAKRAGNGK--PVVKKGFLTRT--------VKEELYPQGSSE-GQPVGTYEKFMSRCKT 424
BLAST of mRNA_Ecto-sp13_S_contig7809.19062.1 vs. uniprot
Match: K3WKX8_GLOUD (PIH1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKX8_GLOUD) HSP 1 Score: 81.3 bits (199), Expect = 3.330e-12 Identity = 49/162 (30.25%), Postives = 84/162 (51.85%), Query Frame = 1
Query: 16 KFFTPIPGFVVKASLQRPWAPPPSAVDGGGMGKVVENAAVGTKVFINLCEHEGVTPPIDQARDRKSHITDRPVDVTKEGRNASGLRIPMFVSRVRETTDHSGERALAVDVVFHPWVLRCSKVEPRFRDQVVALAAGWITKEHPGLVVSQRRKLLKLCTYKGG 501
++FTP PGFVVK ++ ++ TK+F+N C HE + P + ++ ++ P D T+ + S L IP+ V ++RE D +G +A+DVVFHPW+++ + + F+ +V+ LA W+ + +V+ K +K YKGG
Sbjct: 119 RYFTPTPGFVVKCAMYH----------------TIKCQQQETKLFLNCCAHEMIDLPKNP-----NNGSEVPKD-TRAVPSTSNLVIPLVVGKIREIQDFAGGLCVAIDVVFHPWIMQRCEWDGNFKREVMKLAIEWVQHDASVRLVTPVGKFIK-SRYKGG 257
BLAST of mRNA_Ecto-sp13_S_contig7809.19062.1 vs. uniprot
Match: A0A7S2ASE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ASE7_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.580e-11 Identity = 43/130 (33.08%), Postives = 69/130 (53.08%), Query Frame = 1
Query: 139 TKVFINLCEHEGVTPPIDQARDRKSHITDRPVDVTKEGRNASGLRIPMFVSRVRETTDHSGE-RALAVDVVFHPWVLRCSKVEPRFRDQVVALAAGWITKEHPGLVVSQRRKLLKLCTYKGGDGAKGGTP 525
+K+F+N+ H+ + P +DR + ++ + R++ GL IP+ V +VRE DH+G+ A+AVDVVF+PWV+ + + F+ LA W+ E + KL+K YKGG G P
Sbjct: 2 SKLFVNMTSHDAIEAP----KDRSGRLVEK-----GDRRSSDGLNIPLVVGKVRECADHTGQVNAMAVDVVFNPWVIGRCQEDTIFKSTTGDLALTWVADECNLKIGKTGWKLIK-SRYKGGLGENSDEP 121
BLAST of mRNA_Ecto-sp13_S_contig7809.19062.1 vs. uniprot
Match: F0YEZ9_AURAN (PIH1 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEZ9_AURAN) HSP 1 Score: 69.3 bits (168), Expect = 2.280e-8 Identity = 59/190 (31.05%), Postives = 88/190 (46.32%), Query Frame = 1
Query: 868 NASATRDILLPGALAGLASDSGDKKKRENSLN-------EGRRGPLISEIVPDTSTPARAGDGGEALSQVSDDSRVFDGCPGQQPGAKRKIGGKSAPIVKKGFLSSSKVGRKAGRERAPLYPPGGSENGAEPSA-YAKLMSRCKVVDTRDHSKEEMDGAMKAHAGGG-APLRPASQTPEP--KPSHTTTA 1404
NA AT P +L A +++EN L ++ +I E+ PD +AL +D + P AK K P V KGFL+ K ++ PLYP G S+ ++ Y++ MS+CKVVDT +KEE D A++ HA GG +PA+ P+P +P ++T A
Sbjct: 283 NAEATGVAASPESLLARARGLAADREKENGLAMKLPETAAQKKKVMIQEVAPD-----------DALEASTDGFDISSDAP-----AKPK-----KPAVTKGFLAGDKA-----KQAKPLYPNGSSQGDSQKEGTYSRFMSKCKVVDTTQMTKEEQDAALRKHAEGGQVGNKPAAAAPKPPAEPDYSTKA 446
BLAST of mRNA_Ecto-sp13_S_contig7809.19062.1 vs. uniprot
Match: A0A7S2B8J4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B8J4_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.360e-7 Identity = 51/161 (31.68%), Postives = 71/161 (44.10%), Query Frame = 1
Query: 22 FTPIPGFVVKASLQRPWAPPPSAVDGGGMGKVVENAAVGTKVFINLCEHEGVTPPIDQARDRKSHITDRPVDVTKEGRNASGLRIPMFVSRVRETTDHSGERALAVDVVFHPWVLRCSKVEPRFRDQ--VVALAAGWITKEHPGLVVSQRRKLLKLCTYKG 498
TP PGFV+K VD G AVG KVFINLC+HEGV P+ + R + EG GL +P+ + R D G +A+ D V HP V+ SK + Q + LA ++ +++ + R+ L TYKG
Sbjct: 124 ITPEPGFVIKTKR----------VDQAGTAP----GAVG-KVFINLCQHEGVEKPVMKKR------------LNDEGEEVEGLNVPLSIGPPRACDDAKGVKAIVYDCVVHPSVIDESKEDETGNQQNFLCQLALQYVEQKYKCEL--DRKYKLPKATYKG 255 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7809.19062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7809.19062.1 >prot_Ecto-sp13_S_contig7809.19062.1 ID=prot_Ecto-sp13_S_contig7809.19062.1|Name=mRNA_Ecto-sp13_S_contig7809.19062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=845bp RKPKGKFFTPIPGFVVKASLQRPWAPPPSAVDGGGMGKVVENAAVGTKVFback to top mRNA from alignment at Ecto-sp13_S_contig7809:1779..6112- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7809.19062.1 ID=mRNA_Ecto-sp13_S_contig7809.19062.1|Name=mRNA_Ecto-sp13_S_contig7809.19062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7809:1779..6112- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7809:1779..6112- >mRNA_Ecto-sp13_S_contig7809.19062.1 ID=mRNA_Ecto-sp13_S_contig7809.19062.1|Name=mRNA_Ecto-sp13_S_contig7809.19062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2535bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7809:1779..6112- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |