mRNA_Ecto-sp13_S_contig7804.19059.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7804.19059.1
Unique NamemRNA_Ecto-sp13_S_contig7804.19059.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: D7FHF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF2_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.410e-34
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQ 177
            MV GYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLE+RLSLLRKTAFGMARAVAH+Q
Sbjct:    1 MVRGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQ 59
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: A0A6H5K2P5_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.370e-27
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:    1 MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQ 177
            +V G  ++ACNPLALCTGSLPSWCVGLPREFPSLFSLE+RLSLLRKTAFGMARAVAH+Q
Sbjct: 1462 IVSGLQRKACNPLALCTGSLPSWCVGLPREFPSLFSLETRLSLLRKTAFGMARAVAHVQ 1520
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: A0A7I8K2Z8_SPIIN (HECT-type E3 ubiquitin transferase n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K2Z8_SPIIN)

HSP 1 Score: 62.8 bits (151), Expect = 5.440e-10
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    7 PGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQ 177
            P  ++Q  + LALC+GSLPSWC  LPR  P LF  E+R      TAFG++RA+  +Q
Sbjct: 1389 PKLARQIQDALALCSGSLPSWCYQLPRACPFLFPFETRRDFFYSTAFGLSRALHRLQ 1445
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: A0A5K1H120_9MAGN (HECT domain-containing protein (Fragment) n=16 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1H120_9MAGN)

HSP 1 Score: 62.0 bits (149), Expect = 9.990e-10
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQ 177
            + P  ++Q  +PLALC+GSLPSWC  L +  P LF  E+R      TAFG++RA+  +Q
Sbjct:  285 LTPKLARQIQDPLALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQ 343
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: A0A6A3C850_HIBSY (HECT-type E3 ubiquitin transferase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C850_HIBSY)

HSP 1 Score: 62.0 bits (149), Expect = 1.020e-9
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQ 177
            + P  ++Q  + LALC+GSLPSWC  L +  P LF  E+R      TAFG++RA+ H+Q
Sbjct: 1396 LTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYHLQ 1454
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: A0A6I9RAC6_ELAGV (HECT-type E3 ubiquitin transferase n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9RAC6_ELAGV)

HSP 1 Score: 61.2 bits (147), Expect = 1.900e-9
Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQ 177
            + P  ++Q  +PLALC+GSLPSWC  + +  P LF  E+R      TAFG++RA+  +Q
Sbjct: 1389 LTPKLARQIQDPLALCSGSLPSWCYQMTKACPFLFPFETRRQYFYSTAFGLSRALHRLQ 1447
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: A0A7J0DMZ2_9ERIC (HECT ubiquitin protein ligase family protein KAK n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0DMZ2_9ERIC)

HSP 1 Score: 60.8 bits (146), Expect = 2.570e-9
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQV 180
            + P  ++Q  + LALC+GSLPSWC  L +  P LF LE+R      TAFG++RA+  +Q+
Sbjct:  324 LTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPLETRRQYFYSTAFGLSRALYRLQL 383
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: UPI0009E5ADF2 (E3 ubiquitin-protein ligase UPL3 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E5ADF2)

HSP 1 Score: 60.8 bits (146), Expect = 2.600e-9
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQ 177
            + P   +Q  +PLALC+GSLPSWC  L +  P LF  E+R      TAFG++RA+  +Q
Sbjct: 1341 LTPKLVRQIRDPLALCSGSLPSWCYQLTKACPFLFPFETRRQFFYSTAFGISRALHRLQ 1399
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: A0A2R6RBR7_ACTCC (HECT-type E3 ubiquitin transferase n=1 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6RBR7_ACTCC)

HSP 1 Score: 60.8 bits (146), Expect = 2.600e-9
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQV 180
            + P  ++Q  + LALC+GSLPSWC  L +  P LF LE+R      TAFG++RA+  +Q+
Sbjct: 1374 LTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPLETRRQYFYSTAFGLSRALYRLQL 1433
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BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Match: UPI00053C6070 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL3-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6070)

HSP 1 Score: 60.8 bits (146), Expect = 2.600e-9
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFGMARAVAHIQ 177
            + P  ++Q  + LALC+GSLPSWC  L R  P LF  E+R      TAFG++RA+  +Q
Sbjct: 1390 LTPKLARQIQDALALCSGSLPSWCYQLTRACPFLFPFETRRQYFHSTAFGLSRALYRLQ 1448
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7804.19059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHF2_ECTSI3.410e-3494.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2P5_9PHAE1.370e-2786.44HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7I8K2Z8_SPIIN5.440e-1049.12HECT-type E3 ubiquitin transferase n=2 Tax=Spirode... [more]
A0A5K1H120_9MAGN9.990e-1045.76HECT domain-containing protein (Fragment) n=16 Tax... [more]
A0A6A3C850_HIBSY1.020e-945.76HECT-type E3 ubiquitin transferase n=1 Tax=Hibiscu... [more]
A0A6I9RAC6_ELAGV1.900e-944.07HECT-type E3 ubiquitin transferase n=3 Tax=Arecace... [more]
A0A7J0DMZ2_9ERIC2.570e-945.00HECT ubiquitin protein ligase family protein KAK n... [more]
UPI0009E5ADF22.600e-945.76E3 ubiquitin-protein ligase UPL3 n=1 Tax=Phalaenop... [more]
A0A2R6RBR7_ACTCC2.600e-945.00HECT-type E3 ubiquitin transferase n=1 Tax=Actinid... [more]
UPI00053C60702.600e-945.76LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase U... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7804contigEcto-sp13_S_contig7804:6929..7111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start1
Seed ortholog score60.1
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog28532.XP_010555230.1
Model size183
KEGG koko:K10590
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006464,GO:0006725,GO:0006807,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009987,GO:0010026,GO:0010090,GO:0010091,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022402,GO:0030154,GO:0032446,GO:0032502,GO:0032989,GO:0034641,GO:0034645,GO:0036211,GO:0042023,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044786,GO:0046483,GO:0048468,GO:0048856,GO:0048869,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0090558,GO:0090626,GO:0140096,GO:1901360,GO:1901564,GO:1901576
Exons1
EggNOG free text desc.Domain Homologous to E6-AP Carboxyl Terminus with
EggNOG OGs37IGM@33090,3GAK1@35493,3HSNB@3699,COG5021@1,KOG0168@2759,KOG0170@2759
EC2.3.2.26
Cds size183
COG Functional cat.O
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464051.267858-CDS-Ecto-sp13_S_contig7804:6928..71111681464051.267858-CDS-Ecto-sp13_S_contig7804:6928..7111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7804 6929..7111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7804.19059.1prot_Ecto-sp13_S_contig7804.19059.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7804 6929..7111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7804.19059.1

>prot_Ecto-sp13_S_contig7804.19059.1 ID=prot_Ecto-sp13_S_contig7804.19059.1|Name=mRNA_Ecto-sp13_S_contig7804.19059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MVPGYSKQACNPLALCTGSLPSWCVGLPREFPSLFSLESRLSLLRKTAFG
MARAVAHIQV*
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mRNA from alignment at Ecto-sp13_S_contig7804:6929..7111-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7804.19059.1 ID=mRNA_Ecto-sp13_S_contig7804.19059.1|Name=mRNA_Ecto-sp13_S_contig7804.19059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7804:6929..7111- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTCCGGGCTACTCCAAGCAGGCGTGCAACCCGTTGGCGCTGTGCAC
GGGGTCCCTCCCCTCCTGGTGCGTAGGCCTCCCGAGGGAGTTCCCCTCGC
TCTTCTCCCTCGAGAGCCGCTTGTCGCTGCTCCGGAAGACGGCCTTCGGG
ATGGCCAGAGCCGTGGCTCACATTCAGGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7804:6929..7111-

>mRNA_Ecto-sp13_S_contig7804.19059.1 ID=mRNA_Ecto-sp13_S_contig7804.19059.1|Name=mRNA_Ecto-sp13_S_contig7804.19059.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7804:6929..7111- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTCCGGGCTACTCCAAGCAGGCGTGCAACCCGTTGGCGCTGTGCAC
GGGGTCCCTCCCCTCCTGGTGCGTAGGCCTCCCGAGGGAGTTCCCCTCGC
TCTTCTCCCTCGAGAGCCGCTTGTCGCTGCTCCGGAAGACGGCCTTCGGG
ATGGCCAGAGCCGTGGCTCACATTCAGGTATAG
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