mRNA_Ecto-sp13_S_contig78035.19058.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78035.19058.1
Unique NamemRNA_Ecto-sp13_S_contig78035.19058.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78035.19058.1 vs. uniprot
Match: A0A6H5K0E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E2_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.630e-35
Identity = 64/85 (75.29%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:   34 DDELATLVADEPPRAAKQSPLAKALLKTAVENPKGVRSLLKEQAVTAAQACG*QTPLPQWEKSDPAGVTTCGRQQAHIISGVSIQ 288
            D+ELATL+ADEPPRAAKQ+PLAKALL+ AV NP GVR+LLKEQAVTAA+ C  +TP P W  SDP  +TTCGRQQAHII+GVSIQ
Sbjct:   62 DEELATLLADEPPRAAKQTPLAKALLQAAVGNPGGVRALLKEQAVTAAKGCMCETPQPGWANSDPDRITTCGRQQAHIIAGVSIQ 146
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78035.19058.1 vs. uniprot
Match: A0A6H5J7P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.200e-35
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:   34 DDELATLVADEPPRAAKQSPLAKALLKTAVENPKGVRSLLKEQAVTAAQACG*QTPLPQWEKSDPAGVTTCGRQQAHIISGVSIQ 288
            D+ELATL+ADEPPRA KQ+PL+KALL+TAV N  GVR+LL+EQAVTAA+ CG +TP P W+KSDP  +TTCGRQQAHII+GVSIQ
Sbjct:   62 DEELATLLADEPPRAVKQTPLSKALLQTAVGNSGGVRALLEEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQ 146
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78035.19058.1 vs. uniprot
Match: D8LNQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ5_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 5.650e-35
Identity = 66/86 (76.74%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:   31 VDDELATLVADEPPRAAKQSPLAKALLKTAVENPKGVRSLLKEQAVTAAQACG*QTPLPQWEKSDPAGVTTCGRQQAHIISGVSIQ 288
            +DDELATLVADEPPRAAKQSPLA ALLKTA+ENP GVRSLL+EQA TAAQ CG QTPL QW+K D        RQQAHII+GVSIQ
Sbjct:   28 LDDELATLVADEPPRAAKQSPLATALLKTALENPGGVRSLLREQAETAAQGCGCQTPLAQWKKGDXXXXXXXXRQQAHIIAGVSIQ 113
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78035.19058.1 vs. uniprot
Match: A0A6H5K9U2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.650e-34
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:   34 DDELATLVADEPPRAAKQSPLAKALLKTAVENPKGVRSLLKEQAVTAAQACG*QTPLPQWEKSDPAGVTTCGRQQAHIISGVSIQ 288
            D+ELATL+ADEPPRAA Q+PLAKALL+    NP GVR+LLKEQAVTAA+ CG +TP P W+KSDP  +TTCGRQQAHII+GVSIQ
Sbjct:   61 DEELATLLADEPPRAANQTPLAKALLQA---NPGGVRALLKEQAVTAAKGCGCETPQPGWDKSDPDRITTCGRQQAHIIAGVSIQ 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig78035.19058.1 vs. uniprot
Match: A0A6H5KIK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIK6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.840e-12
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 2 
Query:   41 SWPPSWQTSPRVLPSSHLWRRRS*RRPWKTRKEFVHC 151
            SWPPSWQTSPRVLPS  LWRRR  RRPW+TR E  HC
Sbjct:   64 SWPPSWQTSPRVLPSRRLWRRRCCRRPWETRVESGHC 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78035.19058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K0E2_9PHAE1.630e-3575.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7P3_9PHAE3.200e-3574.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNQ5_ECTSI5.650e-3576.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U2_9PHAE2.650e-3474.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIK6_9PHAE1.840e-1278.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78035contigEcto-sp13_S_contig78035:324..611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_006220.1
Cds size192
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464051.2084804-UTR-Ecto-sp13_S_contig78035:323..4191681464051.2084804-UTR-Ecto-sp13_S_contig78035:323..419Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig78035 324..419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464051.2277048-CDS-Ecto-sp13_S_contig78035:419..6111681464051.2277048-CDS-Ecto-sp13_S_contig78035:419..611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78035 420..611 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78035.19058.1prot_Ecto-sp13_S_contig78035.19058.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78035 420..611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78035.19058.1

>prot_Ecto-sp13_S_contig78035.19058.1 ID=prot_Ecto-sp13_S_contig78035.19058.1|Name=mRNA_Ecto-sp13_S_contig78035.19058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
PRWRGFARRRVDDELATLVADEPPRAAKQSPLAKALLKTAVENPKGVRSL
LKEQAVTAAQACG*
back to top

mRNA from alignment at Ecto-sp13_S_contig78035:324..611-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78035.19058.1 ID=mRNA_Ecto-sp13_S_contig78035.19058.1|Name=mRNA_Ecto-sp13_S_contig78035.19058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78035:324..611- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCGATGGCGAGGGTTCGCAAGACGAAGAGTTGACGACGAGCTGGCCAC
CCTCGTGGCAGACGAGCCCCCGCGTGCTGCCAAGCAGTCACCTCTGGCGA
AGGCGCTCCTGAAGACGGCCGTGGAAAACCCGAAAGGAGTTCGTTCATTG
CTGAAGGAGCAAGCGGTGACGGCCGCGCAGGCGTGCGGGTGACAGACACC
CCTTCCGCAATGGGAGAAAAGCGACCCAGCTGGGGTCACAACCTGTGGGC
GCCAGCAGGCCCATATCATCTCTGGGGTGTCTATCCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78035:324..611-

>mRNA_Ecto-sp13_S_contig78035.19058.1 ID=mRNA_Ecto-sp13_S_contig78035.19058.1|Name=mRNA_Ecto-sp13_S_contig78035.19058.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78035:324..611- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCGATGGCGAGGGTTCGCAAGACGAAGAGTTGACGACGAGCTGGCCAC
CCTCGTGGCAGACGAGCCCCCGCGTGCTGCCAAGCAGTCACCTCTGGCGA
AGGCGCTCCTGAAGACGGCCGTGGAAAACCCGAAAGGAGTTCGTTCATTG
CTGAAGGAGCAAGCGGTGACGGCCGCGCAGGCGTGCGGGTGA
back to top