mRNA_Ecto-sp13_S_contig7803.19057.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7803.19057.1 vs. uniprot
Match: D7FXP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP6_ECTSI) HSP 1 Score: 1724 bits (4466), Expect = 0.000e+0 Identity = 954/1100 (86.73%), Postives = 984/1100 (89.45%), Query Frame = 1
Query: 1 AVCPGLGLLAHVDGSSVRLLAFPSRGGQGGLLDGAPGRVVAVIDLKARLVNMDPGDSGNRSAAPDEGLARGLSWSRCNHSAAASTGGDAGSDGARCDRGGNKVCHIAVACGSEVGLWKVSRSAGAANAANEGTGSEDGYRYTTVQVRTDWERSDDQGSSDTSTINETPTCDRLLDGDGRSLAKACDKNDGKSTPPPLGNVRCLSFRPWAGGSTTDAAIPLAAWYDVGVAVLGPRGSRVVLPAPVVRKRTCGAWSGCGRRLALSSGGEIRVYSDPSEGGSRRPTSTAGQARGGVESETVGDAPGLQPAKPRSGWASPGSVPAAAVNDNEGGGRGRGXXXXXXXXXXXXALPSATVAREGGLVAEDETGLTGCSGGASREFRTVLCVEAAMGGGVFSSPGSSPSSTRSSPSPLAVGGSGAKSGGDGTDLTRPGAPPGTRRSRPARDSDGTHSSVGPLSPPPAAATAGVSSPRLLIGDMRAMCPAGSLAFFGTTGGGLGLDSAIAASGPTLSAEPLPAGGGGQTTHVGKGLLGAVVDSSNKACAASSSLDTVSAEKPATRRGGFRHSLPGENWLAGSLRPTSRTLLPNSPRRRGRDSGSPESPLALPVGSSPVAPLEERSSTAAEESVPIGESRPTSSGSSLLRSTMPEVVDRRXXXXXXXXXXX----------KLGNGVDGGGAAGMPTASTHPLFCLSLPGGEDAASSPAVGSSGISLRDSGNRRGRMGTASSRNSHTAGRTTDATPGRRPCLVRVSCRSGEGDDVVSVSTLASLPSELASPDLLASSEDGRIVAVGSHACDLVACYRLESHPASPATESCLPGGXXXXXXXXXXXXXXHRQAVPLCTLKLPTGYRAKGLMLSRERQARGESAATPGVHSSASEEGAAAEDGAMADEVVVLVLAGCAVASVDATIGTTTPRPDMNESSFTAQSHRRGSSSGRPEESSYRTTLLRFFLPAAPGTTANGEDLGSLVGSAASFPSKSSNDKAVRGTSGCGHEKETTTGSSENLSVVPSDATSPLVGDTYGAERDGLRSRGGDSSRHSRSEAAVLEAIVGLERRMNERMDRMEGMLAGVCDRVEELSASLPHAARDVVGKRGAH 3270
AVCPGLGLLAH+DGSSVRLLAFPSR GQ GLL GAPGRVVAVIDLKARL NM PGDSG RSAAPDEGLARGLSWSRCNHS AAST GDAGSDGARCDRGG+KVCHIAVACGSEVGLW+VSR AGAA+AA EGT SEDGYRYTTVQVRTDWERSDDQGS++TS INET CDRLLDGDG SLAKAC++N GK PPP+GNVRCLSFRPWAGGSTTDA IPLAAWYDVGVAVLGPRGSRVVLPAPVVRKRTCGAWSGCGRRLALSSGGEIRVYSDPSEGGSRRP STAGQARGGVESETV DAPGLQPAKPRSGWASPGS XXXXXXXXXALPSATVAREGGLVAE ETGLTGCSGGASR+FRT+LCVEAAMGGGVFSSPGSSP STRSSPSPLA GG GA+SGGDGT LTR GAPPGTR+SRP R SDGTHSSVGPLSPPP AGVSS RLLIGDMRAMCPAGSL FFGTTGGGLGLDSAIAAS PTLS EPL AGGGGQTTHVG+GLL AVVDSSNKACAASSS+DTVSAEKPATRRGGFRHSLPGENWLAGSLRPTSRTLLPNSPRRRGRDSGSPESPLALPVGSSPVAPLEERSSTAAEESVP GESRPTSS SSLLRST+P VVDRRXXXXXXXXXXX KLGNG DGGGAAGMPT STHPLF LSLPGGEDAASSPAVGSS ISLRDSGNR GRMGTAS RNS AGRTTD+TPGRRPCLVRVSCRSG GD VV V+TL SLPSELASPDLLASSEDGRIVAVGSHACDLVACYRLESHPASPATESCLPGG HR+AVPLCTL+LPTGYRAKGLMLSRERQARGESAATPGV+SSAS EGA AEDG MADEVVVLVLAGCAV+SVDATIG TTPRPDMNESSF A+SH RGS+SGRPEESSYRTTLLRF LPAAP TT NGEDLGSLVGSAA+FPSKSSNDKA+RGTSGCGHEKETT GSSENLSVVPSDA SPLVGDT GAE +GLRSRGGDSSRH RSEAAVLEAIVG+ERRMNERM R+EGMLAGVCDR+EELSA LPHAARDVV RGAH
Sbjct: 36 AVCPGLGLLAHLDGSSVRLLAFPSRSGQRGLLGGAPGRVVAVIDLKARLANMAPGDSGKRSAAPDEGLARGLSWSRCNHSVAASTSGDAGSDGARCDRGGDKVCHIAVACGSEVGLWEVSRGAGAASAAKEGTRSEDGYRYTTVQVRTDWERSDDQGSNETSAINETSPCDRLLDGDGGSLAKACNENGGKPPPPPIGNVRCLSFRPWAGGSTTDATIPLAAWYDVGVAVLGPRGSRVVLPAPVVRKRTCGAWSGCGRRLALSSGGEIRVYSDPSEGGSRRPISTAGQARGGVESETVDDAPGLQPAKPRSGWASPGSAXXXXXXXXX----------XXXXXXXXXALPSATVAREGGLVAEGETGLTGCSGGASRDFRTILCVEAAMGGGVFSSPGSSPGSTRSSPSPLADGGGGARSGGDGTGLTRIGAPPGTRKSRPERASDGTHSSVGPLSPPPXXXXAGVSSSRLLIGDMRAMCPAGSLTFFGTTGGGLGLDSAIAASAPTLSGEPLFAGGGGQTTHVGEGLLCAVVDSSNKACAASSSIDTVSAEKPATRRGGFRHSLPGENWLAGSLRPTSRTLLPNSPRRRGRDSGSPESPLALPVGSSPVAPLEERSSTAAEESVPAGESRPTSSESSLLRSTIPAVVDRRXXXXXXXXXXXXXXXXXXXXGKLGNGADGGGAAGMPTPSTHPLFRLSLPGGEDAASSPAVGSSSISLRDSGNRLGRMGTASGRNSPAAGRTTDSTPGRRPCLVRVSCRSGGGDGVVGVATLTSLPSELASPDLLASSEDGRIVAVGSHACDLVACYRLESHPASPATESCLPGGSGGCESGTRRRKRRHRRAVPLCTLRLPTGYRAKGLMLSRERQARGESAATPGVNSSASGEGATAEDGVMADEVVVLVLAGCAVSSVDATIGATTPRPDMNESSFAAESHWRGSNSGRPEESSYRTTLLRFSLPAAPATTGNGEDLGSLVGSAAAFPSKSSNDKAIRGTSGCGHEKETTAGSSENLSVVPSDARSPLVGDTCGAEPNGLRSRGGDSSRHPRSEAAVLEAIVGVERRMNERMARIEGMLAGVCDRLEELSARLPHAARDVVETRGAH 1125
BLAST of mRNA_Ecto-sp13_S_contig7803.19057.1 vs. uniprot
Match: A0A6H5KXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXC0_9PHAE) HSP 1 Score: 1584 bits (4102), Expect = 0.000e+0 Identity = 887/1109 (79.98%), Postives = 922/1109 (83.14%), Query Frame = 1
Query: 1 AVCPGLGLLAHVDGSSVRLLAFPSRGGQGGLLDGAPGRVVAVIDLKARLVNMDPGDSGNRSAAPDEGLARGLSWSRCNHSAAASTGGDAGSDGARCDRGGNKVCHIAVACGSEVGLWKVSRSAGAANAANEGTGSEDGYRYTTVQVRTDWERSDDQGSSDTSTINETPTCDRLLDGDGRSLAKACDKNDGKSTPPPLGNVRCLSFRPWAGGSTTDAAIPLAAWYDVGVAVLGPRGSRVVLPAPVVRKRTCGAWSGCGRRLALSSGGEIRVYSDPSEGGSRRPTSTAGQARGGVESETVGDAPGLQPAKPRSGWASPGSVPAAAVNDNEGGGRGRGXXXXXXXXXXXXALPSATVAREGGLVAEDETG----------------------------LTGCSGGASREFRTVLCVEAAMGGGVFSSPGSSPSSTRSSPSPLAVGGSGAKSGGDGTDLTRPGAPPGTRRSRPARDSDGTHSSVGPLSPPP-AAATAGVSSPRLLIGDMRAMCPAGSLAFFGTTGGGLGLDSAIAASGPTLSAEPLPAGGGGQTTHVGKGLLGAVVDSSNKACAASSSLDTVSAEKPATRRGGFRHSLPGENWLAGSLRPTSRTLLPNSPRRRGRDSGSPESPLALPVGSSPVAPLEERSSTAAEESVPIGESRPTSSGSSLLRSTMPEVVDRRXXXXXXXXXXXKLGNGVDGGGAAGMPTASTHPLFCLSLPGGEDAASSPAVGSSGISLRDSGNRRGRMGTASSRNSHTAGRTTDATPGRRPCLVRVSCRSGEGDDVVSVSTLASLPSELASPDLLASSEDGRIVAVGSHACDLVACYRLESHPASPATESCLPGGXXXXXXXXXXXXXXHRQAVPLCTLKLPTGYRAKGLMLSRERQARGESAATPGVHSSASEEGAAAEDGAMADEVVVLVLAGCAVASVDATIGTTTPRPDMNESSFTAQSHRRGSSSGRPEESSYRTTLLRFFLPAAPGTTANGEDLGSLVGSAASFPSKSSNDKAVRGTSGCGHEKETTTGSSENLSVVPSDATSPLVGDTYGAERDGLRSRGGDSSRHSRSEAAVLEAIVGLERRMNERMDRMEGMLAGVCDRVEELSASLPHAA 3240
AVCPGLGLLAH+DGSSVRLLAFPSR GQGGLL GAPG VVAVIDLKARL NMDPGD+G SAAPDEGLARGLSWSRC+HSAAAS GD+G DGARCDRGG+KVCHIAVACGSEVGLW+VSR AGAA AA EGT SEDGYRYTTVQVRTDWERSDDQGSS+T IN+T CDRL GDG SLAKAC+KN GKS PPPLGNVRCLSFRPWAGGSTTDAAIPLAAWYD GV VLGPRGSRVVLPAPVVRKRTCGAWSGCGRRLALSSGGEIRVYSDPSEG SRRP S AGQARGGVESETVGDAP LQPAK RSGWASPGSV AAA XXXXXXXXXXXX LT CSGGASREFRTVLCVEAAMGGGVFSSPGSSP T S SPLA GG GA+SGGDGT LT+ A PGTRRSRP RDSDG HSSVGPLSPPP AAATAGVSS RLLIGDMRAMCPAGSLAFFGTTGGGLGLDSAIAASGPTLS EPL AGGGGQTTHVG+GLLGAVVDSSNKACAASSS+DT+SA+K ATRRGGFRH+LPGENWLAGSLRPTSRTLLPNSPRRR RD GS ESPLALPVGSSPVAPLEERSS AAEESVPIGE RPTSS SSLLRST+P+VV RR KLGN DGGGAAGMPTASTHPLFCLSLPGGEDAASSPAVGSSGISLRDS TTD+T GRRPCLVRVSCRSG D VV V+TLA LPSELASPDLLA+SEDGRIVAVGSHACDLVACYRLESHPASPATESCLPGG HR+AVPLCTL+LPTGYRAKGLMLSRE+QARGESAATPGVHSSAS EG+ AE G ADEVV+LVLAGCAVASVDATIGTTTPRPDMNESSF A+SH RGSSSGRPEESSYRTTLLRF LPA+P TT NGEDL SLVGSAA+FPSKSSN+KAVRGT GCGHE+ETT GSSEN+SVVPSDA SPLVGDTYGAER+GLRSRG DSSRH RSEA VLEAIVG+ERRMNERMDRMEGMLAGVCDR+EELSA LPHAA
Sbjct: 60 AVCPGLGLLAHLDGSSVRLLAFPSRSGQGGLLGGAPGHVVAVIDLKARLANMDPGDNGKSSAAPDEGLARGLSWSRCSHSAAASKSGDSGRDGARCDRGGDKVCHIAVACGSEVGLWEVSRGAGAACAAKEGTRSEDGYRYTTVQVRTDWERSDDQGSSETRAINDTSPCDRLFGGDGGSLAKACNKNGGKSLPPPLGNVRCLSFRPWAGGSTTDAAIPLAAWYDAGVVVLGPRGSRVVLPAPVVRKRTCGAWSGCGRRLALSSGGEIRVYSDPSEGESRRPISAAGQARGGVESETVGDAPSLQPAKTRSGWASPGSVAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEXXXXXXXARYRLTSCSGGASREFRTVLCVEAAMGGGVFSSPGSSPGGTLSPLSPLADGGGGARSGGDGTGLTQTDALPGTRRSRPERDSDGAHSSVGPLSPPPPAAATAGVSSSRLLIGDMRAMCPAGSLAFFGTTGGGLGLDSAIAASGPTLSGEPLLAGGGGQTTHVGEGLLGAVVDSSNKACAASSSIDTISADKLATRRGGFRHALPGENWLAGSLRPTSRTLLPNSPRRRSRDFGSSESPLALPVGSSPVAPLEERSSKAAEESVPIGEPRPTSSESSLLRSTIPDVVGRRSTTPEVVDLRGKLGNWADGGGAAGMPTASTHPLFCLSLPGGEDAASSPAVGSSGISLRDSXXXXXXXXXXXXXXXXXXXXTTDSTSGRRPCLVRVSCRSGGVDGVVGVATLAFLPSELASPDLLAASEDGRIVAVGSHACDLVACYRLESHPASPATESCLPGGGRGSESVTRRRKRRHRRAVPLCTLRLPTGYRAKGLMLSREKQARGESAATPGVHSSASGEGSTAEHGVTADEVVILVLAGCAVASVDATIGTTTPRPDMNESSFAAESHWRGSSSGRPEESSYRTTLLRFSLPASPATTGNGEDLDSLVGSAAAFPSKSSNNKAVRGTPGCGHERETTAGSSENISVVPSDARSPLVGDTYGAERNGLRSRGVDSSRHPRSEAPVLEAIVGVERRMNERMDRMEGMLAGVCDRLEELSACLPHAA 1168 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7803.19057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7803.19057.1 >prot_Ecto-sp13_S_contig7803.19057.1 ID=prot_Ecto-sp13_S_contig7803.19057.1|Name=mRNA_Ecto-sp13_S_contig7803.19057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1092bp AVCPGLGLLAHVDGSSVRLLAFPSRGGQGGLLDGAPGRVVAVIDLKARLVback to top mRNA from alignment at Ecto-sp13_S_contig7803:3199..6810- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7803.19057.1 ID=mRNA_Ecto-sp13_S_contig7803.19057.1|Name=mRNA_Ecto-sp13_S_contig7803.19057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7803:3199..6810- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7803:3199..6810- >mRNA_Ecto-sp13_S_contig7803.19057.1 ID=mRNA_Ecto-sp13_S_contig7803.19057.1|Name=mRNA_Ecto-sp13_S_contig7803.19057.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7803:3199..6810- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |