mRNA_Ecto-sp13_S_contig780.19053.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig780.19053.1
Unique NamemRNA_Ecto-sp13_S_contig780.19053.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: D7FS66_ECTSI (Putative cyclin A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS66_ECTSI)

HSP 1 Score: 580 bits (1494), Expect = 1.950e-207
Identity = 289/293 (98.63%), Postives = 291/293 (99.32%), Query Frame = 1
Query:  127 QLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEADVRQ 1005
            QLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE+SLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLH+RAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFG E DVRQ
Sbjct:   49 QLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ 341          
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A6H5L2E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E4_9PHAE)

HSP 1 Score: 574 bits (1479), Expect = 1.930e-201
Identity = 285/293 (97.27%), Postives = 290/293 (98.98%), Query Frame = 1
Query:  127 QLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEADVRQ 1005
            QLPPGVKDIDAGVSE+GESHLLNPDYAK+HALYLREQEKRNRPVAYIG KQ+DMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLT ITPCNFQDRFCLAAKSNARE+SLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLH+RAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGE DVRQ
Sbjct:  289 QLPPGVKDIDAGVSEQGESHLLNPDYAKQHALYLREQEKRNRPVAYIGTKQRDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTSITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEGDVRQ 581          
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A835YJW4_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW4_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.350e-68
Identity = 128/266 (48.12%), Postives = 169/266 (63.53%), Query Frame = 1
Query:  190 LNPDYAKEHALYLREQEK--RNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHF 981
             N  Y  ++  +LR QE   + RP AY+   Q+D+R  MRS L+DW+ EVC +F+L   T F  ++L+DRSLSAF V R  LQLLGCAC+++A+K+EE + P+   L +ISD+ YT ++++ ME  V+  L F ++C+TP +F   F  AA  NAR+  L  YLLEL L DY  VSLLPS KAAAA  LAR T+   G    AW+     +TGY+A  LEPCVRR+  LH  AE + LHA+RD+Y K   HRVA V C  E  L F
Sbjct:  212 FNRCYGAQYQHWLRTQEANLKFRPTAYLTQVQRDLRAVMRSTLIDWLVEVCTEFRLQPGTPFLVIELLDRSLSAFCVNRDNLQLLGCACLLVAAKFEEEHPPSVNSLVYISDSAYTISDMVRMEGQVLQHLNFAVSCVTPHHFAAEFSAAAGCNARQGYLCLYLLELALLDYSLVSLLPSHKAAAAALLARMTMRRGG---GAWSALARQFTGYSAATLEPCVRRMRVLHESAENSKLHAIRDRYCKQERHRVALVCCLKESELVF 474          
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: UPI0003F0A1E2 (G2/mitotic-specific cyclin-A-like isoform X2 n=3 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A1E2)

HSP 1 Score: 208 bits (530), Expect = 3.450e-60
Identity = 114/266 (42.86%), Postives = 167/266 (62.78%), Query Frame = 1
Query:  151 IDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQG-VSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVA 945
            I+  +  + +S L  PDYAK+   YL+E E+RNRP A    KQ D+  SMR +LVDW+ EV +++KL + TL+ AV+ IDR LS+  V R KLQL+G A + LA+K+EEIY P   E  +I+D+TYT+ +++ ME +V+  L F L   T   F DRF  AA+++++ + +  +L EL LQ+Y+  +    S  AA+A+ LA  TLHP   P   WT   EHYT +  +++ PCVR LH+  + +  N   AVR+KYK   LH+V+
Sbjct:  170 IEFDLDAKADSQLFVPDYAKDIFSYLKEAEQRNRPKANYMKKQPDITTSMRCILVDWLVEVAEEYKLHNETLYLAVNYIDRFLSSMSVLRSKLQLVGAASMFLAAKFEEIYPPEVGEFVYITDDTYTKKQVLRMEHLVLKVLSFDLAIPTINVFLDRFLRAAEADSKAECMARFLAELTLQEYEPYIRYSQSTIAASAVCLANHTLHPNQQP---WTATLEHYTSFTFQDILPCVRDLHHTFVNSVNNQQQAVREKYKTQKLHQVS 432          
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A2K1L0Q4_PHYPA (Cyclin N-terminal domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L0Q4_PHYPA)

HSP 1 Score: 199 bits (507), Expect = 2.010e-56
Identity = 116/276 (42.03%), Postives = 168/276 (60.87%), Query Frame = 1
Query:  145 KDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLV-----SYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVT 954
            +D+D G S+      +   YA +  ++LR  E + RP   ++ A QKD+ PSMR +L+DW+ EV +++KL   TL+  V  IDR LS   V R +LQLLG +C+++A+KYEEI AP  EE  +I+DNTY R E++ ME  V++ L+F LT  T  +F  RF  AA+++ +  +LV     +YL EL L +Y  +  LPS+ AA+A+Y+AR TL P  CP   W    +HYTGY A  LE CVR +H L   ++   L A+R+KY+      VA +T
Sbjct:  196 EDLDTGHSDP----QMCSAYAADIYMHLRMAEVKRRPTTDFMEAMQKDINPSMRGILIDWLVEVAEEYKLVPDTLYLTVAYIDRFLSCNTVTRQRLQLLGVSCMLIAAKYEEICAPRVEEFCYITDNTYQREEVLEMERKVLSQLKFELTTPTTKSFLRRFIRAAQASCKASTLVLEFLGNYLAELTLTEYSMLGFLPSMVAASAVYMARLTLDPSSCP---WDATLQHYTGYKASALEKCVRDIHDLQRNSKNCTLPAIREKYRLHKFKCVATLT 464          
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A836CJX2_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX2_9STRA)

HSP 1 Score: 192 bits (488), Expect = 3.900e-55
Identity = 117/284 (41.20%), Postives = 168/284 (59.15%), Query Frame = 1
Query:  175 GESHLLNPD----YAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQGV-SLLPSLKAAAALYLARQTL--HPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFG--GEADV 999
            G+ H LN      Y + +  +L  QE + RP  Y+  +Q ++  + RS +VDW+ EVC  +KL + TLF  V+L+DRSL+A    R  LQ L CAC++LA+K+EE  AP++  LA ISDN ++RA ++  E  V+ AL+FR++C TP  +   +C AA  +AR+  L  Y+LEL L DY  V + +PSL+AAAA +LAR T+          AW      ++GY A +LE C RR+H LH  AE   L AVR+K+ +    RVA + CA + +L     G AD 
Sbjct:   16 GDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYMH-RQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHLRCALRGSADA 298          
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: C3YZV0_BRAFL (Cyclin N-terminal domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YZV0_BRAFL)

HSP 1 Score: 190 bits (482), Expect = 1.920e-54
Identity = 115/271 (42.44%), Postives = 162/271 (59.78%), Query Frame = 1
Query:  142 VKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQG-VSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEV 951
            ++DIDA     G+S L   +YA E   YLRE E R+RP      KQ D+  SMR +LVDW+ EV +++KL + TL+ AV  IDR LS+  V R KLQL+G A + LASKYEEIY P   E  +I+D+TYT+ +++ ME +++  L F +   T   FQ RF  AAK N++ +SL  YL EL LQ+ +  +  +PS  AAA+L LA+ TL+      + WT    HY+GY   +L PCV+ +H     A  +   AVR+KY+    H V+ +
Sbjct:   50 IEDIDA----RGDSVLEVAEYATEIFQYLREAELRHRPKPGYMKKQPDITNSMRCILVDWLVEVAEEYKLHNETLYLAVSYIDRFLSSMSVLRSKLQLVGTAAMFLASKYEEIYPPDVGEFVYITDDTYTKKQVLRMEHLILKVLSFDVAVPTINCFQKRFLQAAKVNSKTESLAMYLAELTLQEGETFLKYVPSTIAAASLCLAQHTLNM-----QPWTPTLMHYSGYTLADLLPCVQDMHRSFQAAPSSQQQAVREKYRSPKYHGVSTI 311          
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A2K1LBF9_PHYPA (Cyclin N-terminal domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LBF9_PHYPA)

HSP 1 Score: 193 bits (491), Expect = 4.210e-54
Identity = 111/254 (43.70%), Postives = 159/254 (62.60%), Query Frame = 1
Query:  202 YAKEHALYLREQEKRNRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLV-----SYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVA 945
            YA +   +LR  E + RP A ++ + Q+D+ P+MR +LVDW+ EV +++KL   TL+ AV  IDR LSA  V R +LQLLG AC+++A+KYEEI  P  EE  +I+DNTY R E++ ME  V+N L+F LT  T   F  RF  AA+++ +  +L      SYL EL L +Y+ +  LPS+ AA+++YLA+ TL    CP   W    +HYTGY   ELE CV+ +H L +  +  +L AVR+KY++     VA
Sbjct:  202 YAADIYEHLRVAEVKRRPKADFMESMQQDINPTMRGILVDWLVEVAEEYKLFPDTLYLAVSFIDRYLSAHVVTRQRLQLLGVACMLIAAKYEEICTPQVEEFCNITDNTYCREEVLEMEREVLNVLKFELTTPTTLTFLRRFTRAAQTSYKAPTLSLEFLGSYLAELTLLEYEFLPFLPSMIAASSVYLAKITLDSSTCP---WDATLQHYTGYRPSELEHCVKAIHELQLNTKSCSLPAVREKYRQHKFKCVA 452          
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A817B2C1_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A817B2C1_BRANA)

HSP 1 Score: 187 bits (475), Expect = 7.930e-54
Identity = 114/275 (41.45%), Postives = 162/275 (58.91%), Query Frame = 1
Query:  202 YAKEHALYLREQEKR--NRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE-----QSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEADVR 1002
            Y  +   YLRE E +   RP+  YI   Q D+ PSMR VLVDW+ EV +++KL S TL+  V  +DR LSA  + R +LQL+G + +++ASKYEEI  P  E+  +I+DNT+TR ++++ME  ++ ALQF L C T   F  RF   A+ +  E     + L  YL EL L DY  V  LPSL A++A++LAR  + P+  P   W +  E YT Y A +L+ CV  +H L++   GN L AVR+KYK+     VA +  + E  L F  +  +R
Sbjct:    5 YVADICAYLREMEGKLKQRPLHDYIEKVQNDITPSMRGVLVDWLVEVAEEYKLVSDTLYLTVSYVDRFLSAKPIHRQRLQLVGVSAMLIASKYEEISPPKVEDFVYITDNTFTRQDVVSMEADILLALQFELGCPTIKTFLRRFTRVAQEDFNESLLQIEFLCCYLSELSLLDYTCVKFLPSLLASSAVFLARFIIRPKQHP---WNQMLEEYTKYKASDLQQCVGIIHDLYLSRRGNVLEAVRNKYKQHKFKCVATLPVSPELPLAFFEDVTIR 276          
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: M4FHY1_BRARP (Cyclin N-terminal domain-containing protein n=13 Tax=Brassiceae TaxID=981071 RepID=M4FHY1_BRARP)

HSP 1 Score: 189 bits (479), Expect = 2.070e-53
Identity = 119/298 (39.93%), Postives = 171/298 (57.38%), Query Frame = 1
Query:  133 PPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKR--NRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE-----QSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEADVR 1002
            PP   D ++G  +     +  P Y  +   YLRE E +   RP+  YI   Q D+ PSMR VLVDW+ EV +++KL S TL+  V  +DR LSA  + R +LQL+G + +++ASKYEEI  P  E+  +I+DNT+TR ++++ME  ++ ALQF L C T   F  RF   A+ +  E     + L  YL EL L DY  V  LPSL A++A++LAR  + P+  P   W +  E YT Y A +L+ CV  +H L++   GN L AVR+KYK+     VA +  + E  L F  +  +R
Sbjct:   72 PPPALDFESGSVD---PQMCGP-YVADICAYLREMEGKLKQRPLHDYIEKVQNDITPSMRGVLVDWLVEVAEEYKLVSDTLYLTVSYVDRFLSAKPIHRQRLQLVGVSAMLIASKYEEISPPKVEDFVYITDNTFTRQDVVSMEADILLALQFELGCPTIKTFLRRFTRVAQEDFNESLLQIEFLCCYLSELSLLDYTCVKFLPSLLASSAVFLARFIIRPKQHP---WNQMLEEYTKYKASDLQQCVGIIHDLYLSRRGNVLEAVRNKYKQHKFKCVATMPVSPELPLAFFEDVTIR 362          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS66_ECTSI1.950e-20798.63Putative cyclin A n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L2E4_9PHAE1.930e-20197.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YJW4_9STRA1.350e-6848.12Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
UPI0003F0A1E23.450e-6042.86G2/mitotic-specific cyclin-A-like isoform X2 n=3 T... [more]
A0A2K1L0Q4_PHYPA2.010e-5642.03Cyclin N-terminal domain-containing protein n=2 Ta... [more]
A0A836CJX2_9STRA3.900e-5541.20Cyclin-like protein n=1 Tax=Tribonema minus TaxID=... [more]
C3YZV0_BRAFL1.920e-5442.44Cyclin N-terminal domain-containing protein n=1 Ta... [more]
A0A2K1LBF9_PHYPA4.210e-5443.70Cyclin N-terminal domain-containing protein n=2 Ta... [more]
A0A817B2C1_BRANA7.930e-5441.45(rape) hypothetical protein n=1 Tax=Brassica napus... [more]
M4FHY1_BRARP2.070e-5339.93Cyclin N-terminal domain-containing protein n=13 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig780contigEcto-sp13_S_contig780:11535..14376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score473.4
Seed ortholog evalue6.3e-131
Seed eggNOG ortholog2880.D7FS66
Preferred nameCCNA2
Model size1022
KEGG koko:K06627,ko:K14521,ko:K14611,ko:K21777
KEGG TC2.A.40.6
KEGG Pathwayko03008,ko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map03008,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000082,GO:0000083,GO:0000086,GO:0000278,GO:0000280,GO:0000307,GO:0000819,GO:0001932,GO:0001939,GO:0001940,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006355,GO:0006464,GO:0006468,GO:0006508,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007096,GO:0007127,GO:0007135,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0007399,GO:0007405,GO:0007422,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008356,GO:0009058,GO:0009059,GO:0009555,GO:0009556,GO:0009653,GO:0009790,GO:0009791,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010015,GO:0010101,GO:0010102,GO:0010311,GO:0010374,GO:0010389,GO:0010440,GO:0010444,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010639,GO:0010948,GO:0010965,GO:0015630,GO:0016043,GO:0016310,GO:0016538,GO:0016569,GO:0016570,GO:0016572,GO:0016579,GO:0017145,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022622,GO:0023052,GO:0030071,GO:0030154,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033301,GO:0034293,GO:0034641,GO:0034645,GO:0035186,GO:0035556,GO:0035561,GO:0036211,GO:0036445,GO:0042023,GO:0042127,GO:0042325,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043549,GO:0043934,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0045120,GO:0045165,GO:0045170,GO:0045448,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045859,GO:0045893,GO:0045930,GO:0045935,GO:0045995,GO:0046483,GO:0048103,GO:0048145,GO:0048146,GO:0048229,GO:0048232,GO:0048236,GO:0048285,GO:0048364,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048527,GO:0048528,GO:0048580,GO:0048582,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051098,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051321,GO:0051338,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0055057,GO:0055059,GO:0060255,GO:0061351,GO:0061695,GO:0061982,GO:0061983,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0072089,GO:0080090,GO:0090068,GO:0090304,GO:0090558,GO:0090627,GO:0090696,GO:0090697,GO:0090698,GO:0097123,GO:0097124,GO:0098722,GO:0098772,GO:0098813,GO:0099402,GO:0140013,GO:0140014,GO:1901360,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902806,GO:1902808,GO:1902911,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1905392,GO:1905393,GO:1905818,GO:1905819,GO:1990234,GO:2000026,GO:2000038,GO:2000112,GO:2000123,GO:2000241,GO:2000816,GO:2001141,GO:2001251
Exons2
EggNOG free text desc.cell division
EggNOG OGsCOG5024@1,KOG0654@2759
Ec32 ortholog descriptionPutative cyclin A
Ec32 orthologEc-01_000740.1
Cds size723
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03009,ko03032,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464050.7454624-UTR-Ecto-sp13_S_contig780:11534..115481681464050.7454624-UTR-Ecto-sp13_S_contig780:11534..11548Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig780 11535..11548 -
1681464050.7816355-UTR-Ecto-sp13_S_contig780:14091..143761681464050.7816355-UTR-Ecto-sp13_S_contig780:14091..14376Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig780 14092..14376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464050.7612343-CDS-Ecto-sp13_S_contig780:11548..121841681464050.7612343-CDS-Ecto-sp13_S_contig780:11548..12184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig780 11549..12184 -
1681464050.7711737-CDS-Ecto-sp13_S_contig780:14004..140911681464050.7711737-CDS-Ecto-sp13_S_contig780:14004..14091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig780 14005..14091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig780.19053.1prot_Ecto-sp13_S_contig780.19053.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig780 11549..14091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig780.19053.1

>prot_Ecto-sp13_S_contig780.19053.1 ID=prot_Ecto-sp13_S_contig780.19053.1|Name=mRNA_Ecto-sp13_S_contig780.19053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=241bp
MRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQL
LGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFR
LTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQGVSLLPSLKAA
AALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAE
GNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEADVRQ*
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mRNA from alignment at Ecto-sp13_S_contig780:11535..14376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig780.19053.1 ID=mRNA_Ecto-sp13_S_contig780.19053.1|Name=mRNA_Ecto-sp13_S_contig780.19053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2842bp|location=Sequence derived from alignment at Ecto-sp13_S_contig780:11535..14376- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGACAAGTAAAGACGGCAGCAGCTGCTCGAGCCAACCACTAGCACCGCC GCCGCCGGCGGCGGTGGCTGCTCAGCAACGGGTGGGCGGGGCGCGGAAAC CACACGCACAGCAGCAGCAGCAGGAGCAGCTTCCGCCGGGGGTGAAAGAC ATCGACGCCGGGGTGTCGGAGGAGGGGGAGTCCCACCTGCTGAATCCCGA CTACGCCAAGGAGCACGCGCTGTACCTGCGCGAGCAGGAGAAACGGAATA GGCCGGTGGCCTACATCGGCGCGAAGCAGAAGGACATGCGGCCGAGCATG AGGAGCGTCCTCGTGGATTGGATCTGCGAGGTCTGCGACCAGTTCAAGCT ATCTTCGAGAACTCTGTTTCAGGTAAGCGACCGAGCGCTTTGGTGCTGGG GTGTGTGCACGTTCTTGGTCTTTTTTGAAAAATAGGCGCGAGAACGGTCG GATGTCGAAAAATAGAAATTAGTACCGAGACGGCTCGTCTTCGGATTCCC TTTTCTTCAGCGGCACCTGCAAGCGCAAGGCACCCCGCCCTGCGCGCGTG CTTTCTATTTTCGAAAACATGCGTGCATTATTGATTGCTTATCCTCACGC ACTACGCCCGCTCCTTGGCGAACTCTCAAAAATTTGAATATCCAACTATA TTTAAACAGCAGGCTATATGCACAGGTCTGTTTGGAGTCTCTCCGTGGTG TGTCGAGGAGAACGCTTCCCTTCCTACACCTACAGCAGCACACCCAACTC TCCGACGGTTGTATCTACATCGTTCCCGCTTCGAGGCGTTGTTGTGCTTC TTCTCTTGGTGCCTACAACAACGAGCACGACCCTCGTATTTTTTCGCTAT ACAGCAGTCAGTAGTTCAAACTTTTGTCCTCAAGCCTACATGGATGTATG TACCCGATCACCTTTCGCTGCCGCGCGACGTTCCAAGTTCTTTTTAGAAG ATGAATACCAGGTACATATGTATATGCACATCATTCTCAACGAGCGACTA TTGCTCCTTACCGGATAGAGGTGCTATCATCGTATAATACCATACACCAT ACCCCGACGATCACGCCTTGTTTGAACAACTTTGGTCTCTGTGAATGGCA TCGTTAGCTGTAACGAGTCGCAGCACTGCGATGAAAAGAGAGACGGCTTT TGATACGCTTTTCAGCCACTGGACTATTCCTGTTGTGTAGCTTGGAGAGG AACAAAAAAAATCCAGCTTATGGAAGGAAGATTGCATCGCAGCATTTGAC AAGGTTAAGGTTGAAACGATCCCCGCGTCCTTGCCCCATTGTAACGGACG CACTGCTCAACACCACGCAATGGAGAGCTTCGCAACCAGACAAGTTTTAT ACTAAACCATGCGCATTTAGAGAAGTCCGCATTGGATTGTTTTCATCGAC GAGGTGCTTCAGGTGCTTTCTCCGTTATCACGGTACAATCAATCCTTTGT TCGCAAAGTACCAATACAGTAGGTGGTGATGCCCGACGTGCGATTGTACC GCTTGACCGCTGATGCGTTGTCCAATTCCCGAGCACATTTGTTTGCATAT TAATGCTCCTCTTCACATGGTATTGAGACGAAGCTGCCAAACGCTTGACA TGTCTGATTATCTTTTGCCCCAGATTTTTTTTTTCTCGCCTTGTGTGGAT AAGTTTAGTTGTTTCTTGCGCCAATTCTCATCATGTGTGCTAAGTAAGGC ATGACACCAAAAGCACGTGCGTGCACGGCAGTCATGCGTAGTCCGAAGGA CGAGTCCTGAATGTTGATTAGTTTTTGTACATGCTCACGTCCGTTTGTGA TGGCATCAGCTTCGAAACCCTTGGCATGGTTTCGGCGTCGTCACGCCATG TTAGTGTGTCGCGGGAATTTTTTGTTGGTCAGCGATATGTAGATTTTTTT CCGTGTGTCTCGTTCTGTCAGCCTGCCCGTGAAGTTCTTGCACCCAGGCA AAGCCCGAGCTCTTACTATTGAGGACGACGGCGCGCATGCTCCTATCTCT CAGACTTCGAAACGCGGCGCGTCTTTCTCTCTTTTCAGTGGCACTCACTG ACTTCGCGTCTCCCAACCCCTACACACACACATGACCTCGCTCCAAAGTG TCAAAAGCTCTCAGGACGTCGTCTTTGAAACGCGTCTGCGCGGCTCGTGC TCTGTTACTTACTGATTTCGCGTCCCCTACCCACCCCGTTAGGCGGTGGA CCTGATCGACCGAAGCCTGTCGGCGTTCGAAGTTCCCCGGGGGAAGCTGC AGCTGCTAGGGTGCGCCTGCGTGGTCCTGGCCTCAAAGTACGAGGAGATC TACGCCCCGACGGCCGAAGAGCTGGCGCACATCTCCGACAATACCTACAC CCGTGCGGAGATCATCGCCATGGAGCTGGTTGTCGTGAACGCGCTCCAGT TCCGGCTGACGTGCATCACCCCGTGCAACTTCCAGGACCGCTTCTGCCTG GCGGCGAAGTCGAACGCCCGCGAGCAGTCCCTCGTGTCGTACCTCTTGGA GCTCCTCCTGCAAGACTACCAAGGGGTCAGCCTGCTGCCTTCGCTGAAAG CCGCAGCTGCGCTGTACCTGGCTCGGCAGACGCTGCACCCTAGGGGCTGC CCGCGCGAGGCTTGGACGAGGCAGACGGAGCACTACACGGGCTACGCTGC CCGGGAGCTGGAGCCGTGCGTGCGGCGGCTTCACTACCTGCACATCAGGG CCGAGGGGAACAACCTCCACGCCGTGAGGGACAAGTACAAGAAGTCGGCG CTGCACCGAGTTGCGGAAGTAACGTGTGCCCTTGAGGACTACCTCCATTT CGGGGGGGAAGCGGATGTCCGCCAGTAGCAGGATTAGTACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig780:11535..14376-

>mRNA_Ecto-sp13_S_contig780.19053.1 ID=mRNA_Ecto-sp13_S_contig780.19053.1|Name=mRNA_Ecto-sp13_S_contig780.19053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig780:11535..14376- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCCGAGCATGAGGAGCGTCCTCGTGGATTGGATCTGCGAGGTCTG
CGACCAGTTCAAGCTATCTTCGAGAACTCTGTTTCAGGCGGTGGACCTGA
TCGACCGAAGCCTGTCGGCGTTCGAAGTTCCCCGGGGGAAGCTGCAGCTG
CTAGGGTGCGCCTGCGTGGTCCTGGCCTCAAAGTACGAGGAGATCTACGC
CCCGACGGCCGAAGAGCTGGCGCACATCTCCGACAATACCTACACCCGTG
CGGAGATCATCGCCATGGAGCTGGTTGTCGTGAACGCGCTCCAGTTCCGG
CTGACGTGCATCACCCCGTGCAACTTCCAGGACCGCTTCTGCCTGGCGGC
GAAGTCGAACGCCCGCGAGCAGTCCCTCGTGTCGTACCTCTTGGAGCTCC
TCCTGCAAGACTACCAAGGGGTCAGCCTGCTGCCTTCGCTGAAAGCCGCA
GCTGCGCTGTACCTGGCTCGGCAGACGCTGCACCCTAGGGGCTGCCCGCG
CGAGGCTTGGACGAGGCAGACGGAGCACTACACGGGCTACGCTGCCCGGG
AGCTGGAGCCGTGCGTGCGGCGGCTTCACTACCTGCACATCAGGGCCGAG
GGGAACAACCTCCACGCCGTGAGGGACAAGTACAAGAAGTCGGCGCTGCA
CCGAGTTGCGGAAGTAACGTGTGCCCTTGAGGACTACCTCCATTTCGGGG
GGGAAGCGGATGTCCGCCAGTAG
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