mRNA_Ecto-sp13_S_contig780.19053.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: D7FS66_ECTSI (Putative cyclin A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS66_ECTSI) HSP 1 Score: 580 bits (1494), Expect = 1.950e-207 Identity = 289/293 (98.63%), Postives = 291/293 (99.32%), Query Frame = 1
Query: 127 QLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEADVRQ 1005
QLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE+SLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLH+RAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFG E DVRQ
Sbjct: 49 QLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGEEGDVRQ 341
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A6H5L2E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E4_9PHAE) HSP 1 Score: 574 bits (1479), Expect = 1.930e-201 Identity = 285/293 (97.27%), Postives = 290/293 (98.98%), Query Frame = 1
Query: 127 QLPPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEADVRQ 1005
QLPPGVKDIDAGVSE+GESHLLNPDYAK+HALYLREQEKRNRPVAYIG KQ+DMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLT ITPCNFQDRFCLAAKSNARE+SLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLH+RAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGE DVRQ
Sbjct: 289 QLPPGVKDIDAGVSEQGESHLLNPDYAKQHALYLREQEKRNRPVAYIGTKQRDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTSITPCNFQDRFCLAAKSNARERSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHVRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEGDVRQ 581
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A835YJW4_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJW4_9STRA) HSP 1 Score: 231 bits (589), Expect = 1.350e-68 Identity = 128/266 (48.12%), Postives = 169/266 (63.53%), Query Frame = 1
Query: 190 LNPDYAKEHALYLREQEK--RNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHF 981
N Y ++ +LR QE + RP AY+ Q+D+R MRS L+DW+ EVC +F+L T F ++L+DRSLSAF V R LQLLGCAC+++A+K+EE + P+ L +ISD+ YT ++++ ME V+ L F ++C+TP +F F AA NAR+ L YLLEL L DY VSLLPS KAAAA LAR T+ G AW+ +TGY+A LEPCVRR+ LH AE + LHA+RD+Y K HRVA V C E L F
Sbjct: 212 FNRCYGAQYQHWLRTQEANLKFRPTAYLTQVQRDLRAVMRSTLIDWLVEVCTEFRLQPGTPFLVIELLDRSLSAFCVNRDNLQLLGCACLLVAAKFEEEHPPSVNSLVYISDSAYTISDMVRMEGQVLQHLNFAVSCVTPHHFAAEFSAAAGCNARQGYLCLYLLELALLDYSLVSLLPSHKAAAAALLARMTMRRGG---GAWSALARQFTGYSAATLEPCVRRMRVLHESAENSKLHAIRDRYCKQERHRVALVCCLKESELVF 474
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: UPI0003F0A1E2 (G2/mitotic-specific cyclin-A-like isoform X2 n=3 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A1E2) HSP 1 Score: 208 bits (530), Expect = 3.450e-60 Identity = 114/266 (42.86%), Postives = 167/266 (62.78%), Query Frame = 1
Query: 151 IDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQG-VSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVA 945
I+ + + +S L PDYAK+ YL+E E+RNRP A KQ D+ SMR +LVDW+ EV +++KL + TL+ AV+ IDR LS+ V R KLQL+G A + LA+K+EEIY P E +I+D+TYT+ +++ ME +V+ L F L T F DRF AA+++++ + + +L EL LQ+Y+ + S AA+A+ LA TLHP P WT EHYT + +++ PCVR LH+ + + N AVR+KYK LH+V+
Sbjct: 170 IEFDLDAKADSQLFVPDYAKDIFSYLKEAEQRNRPKANYMKKQPDITTSMRCILVDWLVEVAEEYKLHNETLYLAVNYIDRFLSSMSVLRSKLQLVGAASMFLAAKFEEIYPPEVGEFVYITDDTYTKKQVLRMEHLVLKVLSFDLAIPTINVFLDRFLRAAEADSKAECMARFLAELTLQEYEPYIRYSQSTIAASAVCLANHTLHPNQQP---WTATLEHYTSFTFQDILPCVRDLHHTFVNSVNNQQQAVREKYKTQKLHQVS 432
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A2K1L0Q4_PHYPA (Cyclin N-terminal domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L0Q4_PHYPA) HSP 1 Score: 199 bits (507), Expect = 2.010e-56 Identity = 116/276 (42.03%), Postives = 168/276 (60.87%), Query Frame = 1
Query: 145 KDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLV-----SYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVT 954
+D+D G S+ + YA + ++LR E + RP ++ A QKD+ PSMR +L+DW+ EV +++KL TL+ V IDR LS V R +LQLLG +C+++A+KYEEI AP EE +I+DNTY R E++ ME V++ L+F LT T +F RF AA+++ + +LV +YL EL L +Y + LPS+ AA+A+Y+AR TL P CP W +HYTGY A LE CVR +H L ++ L A+R+KY+ VA +T
Sbjct: 196 EDLDTGHSDP----QMCSAYAADIYMHLRMAEVKRRPTTDFMEAMQKDINPSMRGILIDWLVEVAEEYKLVPDTLYLTVAYIDRFLSCNTVTRQRLQLLGVSCMLIAAKYEEICAPRVEEFCYITDNTYQREEVLEMERKVLSQLKFELTTPTTKSFLRRFIRAAQASCKASTLVLEFLGNYLAELTLTEYSMLGFLPSMVAASAVYMARLTLDPSSCP---WDATLQHYTGYKASALEKCVRDIHDLQRNSKNCTLPAIREKYRLHKFKCVATLT 464
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A836CJX2_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX2_9STRA) HSP 1 Score: 192 bits (488), Expect = 3.900e-55 Identity = 117/284 (41.20%), Postives = 168/284 (59.15%), Query Frame = 1
Query: 175 GESHLLNPD----YAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQGV-SLLPSLKAAAALYLARQTL--HPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFG--GEADV 999
G+ H LN Y + + +L QE + RP Y+ +Q ++ + RS +VDW+ EVC +KL + TLF V+L+DRSL+A R LQ L CAC++LA+K+EE AP++ LA ISDN ++RA ++ E V+ AL+FR++C TP + +C AA +AR+ L Y+LEL L DY V + +PSL+AAAA +LAR T+ AW ++GY A +LE C RR+H LH AE L AVR+K+ + RVA + CA + +L G AD
Sbjct: 16 GDEHDLNVAFLQCYGQHYVAWLYVQELQLRPADYMH-RQPNVGANSRSTVVDWLVEVCGSYKLGASTLFLCVELLDRSLTALCTARCDLQRLACACLLLAAKHEEEQAPSSSALACISDNAFSRAGVLRTEAQVLVALEFRVSCATPYQYAALYCAAAGCDARQARLCLYILELSLLDYTLVHTYVPSLRAAAAAFLARATMCTSAAAAAGAAWPPTAARFSGYGAAQLEACARRMHALHEGAEDALLRAVREKHARPGALRVAALCCASDAHLRCALRGSADA 298
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: C3YZV0_BRAFL (Cyclin N-terminal domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YZV0_BRAFL) HSP 1 Score: 190 bits (482), Expect = 1.920e-54 Identity = 115/271 (42.44%), Postives = 162/271 (59.78%), Query Frame = 1
Query: 142 VKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKRNRPVAYIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLVSYLLELLLQDYQG-VSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEV 951
++DIDA G+S L +YA E YLRE E R+RP KQ D+ SMR +LVDW+ EV +++KL + TL+ AV IDR LS+ V R KLQL+G A + LASKYEEIY P E +I+D+TYT+ +++ ME +++ L F + T FQ RF AAK N++ +SL YL EL LQ+ + + +PS AAA+L LA+ TL+ + WT HY+GY +L PCV+ +H A + AVR+KY+ H V+ +
Sbjct: 50 IEDIDA----RGDSVLEVAEYATEIFQYLREAELRHRPKPGYMKKQPDITNSMRCILVDWLVEVAEEYKLHNETLYLAVSYIDRFLSSMSVLRSKLQLVGTAAMFLASKYEEIYPPDVGEFVYITDDTYTKKQVLRMEHLILKVLSFDVAVPTINCFQKRFLQAAKVNSKTESLAMYLAELTLQEGETFLKYVPSTIAAASLCLAQHTLNM-----QPWTPTLMHYSGYTLADLLPCVQDMHRSFQAAPSSQQQAVREKYRSPKYHGVSTI 311
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A2K1LBF9_PHYPA (Cyclin N-terminal domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LBF9_PHYPA) HSP 1 Score: 193 bits (491), Expect = 4.210e-54 Identity = 111/254 (43.70%), Postives = 159/254 (62.60%), Query Frame = 1
Query: 202 YAKEHALYLREQEKRNRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNAREQSLV-----SYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVA 945
YA + +LR E + RP A ++ + Q+D+ P+MR +LVDW+ EV +++KL TL+ AV IDR LSA V R +LQLLG AC+++A+KYEEI P EE +I+DNTY R E++ ME V+N L+F LT T F RF AA+++ + +L SYL EL L +Y+ + LPS+ AA+++YLA+ TL CP W +HYTGY ELE CV+ +H L + + +L AVR+KY++ VA
Sbjct: 202 YAADIYEHLRVAEVKRRPKADFMESMQQDINPTMRGILVDWLVEVAEEYKLFPDTLYLAVSFIDRYLSAHVVTRQRLQLLGVACMLIAAKYEEICTPQVEEFCNITDNTYCREEVLEMEREVLNVLKFELTTPTTLTFLRRFTRAAQTSYKAPTLSLEFLGSYLAELTLLEYEFLPFLPSMIAASSVYLAKITLDSSTCP---WDATLQHYTGYRPSELEHCVKAIHELQLNTKSCSLPAVREKYRQHKFKCVA 452
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: A0A817B2C1_BRANA ((rape) hypothetical protein n=1 Tax=Brassica napus TaxID=3708 RepID=A0A817B2C1_BRANA) HSP 1 Score: 187 bits (475), Expect = 7.930e-54 Identity = 114/275 (41.45%), Postives = 162/275 (58.91%), Query Frame = 1
Query: 202 YAKEHALYLREQEKR--NRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE-----QSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEADVR 1002
Y + YLRE E + RP+ YI Q D+ PSMR VLVDW+ EV +++KL S TL+ V +DR LSA + R +LQL+G + +++ASKYEEI P E+ +I+DNT+TR ++++ME ++ ALQF L C T F RF A+ + E + L YL EL L DY V LPSL A++A++LAR + P+ P W + E YT Y A +L+ CV +H L++ GN L AVR+KYK+ VA + + E L F + +R
Sbjct: 5 YVADICAYLREMEGKLKQRPLHDYIEKVQNDITPSMRGVLVDWLVEVAEEYKLVSDTLYLTVSYVDRFLSAKPIHRQRLQLVGVSAMLIASKYEEISPPKVEDFVYITDNTFTRQDVVSMEADILLALQFELGCPTIKTFLRRFTRVAQEDFNESLLQIEFLCCYLSELSLLDYTCVKFLPSLLASSAVFLARFIIRPKQHP---WNQMLEEYTKYKASDLQQCVGIIHDLYLSRRGNVLEAVRNKYKQHKFKCVATLPVSPELPLAFFEDVTIR 276
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Match: M4FHY1_BRARP (Cyclin N-terminal domain-containing protein n=13 Tax=Brassiceae TaxID=981071 RepID=M4FHY1_BRARP) HSP 1 Score: 189 bits (479), Expect = 2.070e-53 Identity = 119/298 (39.93%), Postives = 171/298 (57.38%), Query Frame = 1
Query: 133 PPGVKDIDAGVSEEGESHLLNPDYAKEHALYLREQEKR--NRPVA-YIGAKQKDMRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLLGCACVVLASKYEEIYAPTAEELAHISDNTYTRAEIIAMELVVVNALQFRLTCITPCNFQDRFCLAAKSNARE-----QSLVSYLLELLLQDYQGVSLLPSLKAAAALYLARQTLHPRGCPREAWTRQTEHYTGYAARELEPCVRRLHYLHIRAEGNNLHAVRDKYKKSALHRVAEVTCALEDYLHFGGEADVR 1002
PP D ++G + + P Y + YLRE E + RP+ YI Q D+ PSMR VLVDW+ EV +++KL S TL+ V +DR LSA + R +LQL+G + +++ASKYEEI P E+ +I+DNT+TR ++++ME ++ ALQF L C T F RF A+ + E + L YL EL L DY V LPSL A++A++LAR + P+ P W + E YT Y A +L+ CV +H L++ GN L AVR+KYK+ VA + + E L F + +R
Sbjct: 72 PPPALDFESGSVD---PQMCGP-YVADICAYLREMEGKLKQRPLHDYIEKVQNDITPSMRGVLVDWLVEVAEEYKLVSDTLYLTVSYVDRFLSAKPIHRQRLQLVGVSAMLIASKYEEISPPKVEDFVYITDNTFTRQDVVSMEADILLALQFELGCPTIKTFLRRFTRVAQEDFNESLLQIEFLCCYLSELSLLDYTCVKFLPSLLASSAVFLARFIIRPKQHP---WNQMLEEYTKYKASDLQQCVGIIHDLYLSRRGNVLEAVRNKYKQHKFKCVATMPVSPELPLAFFEDVTIR 362 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig780.19053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig780.19053.1 >prot_Ecto-sp13_S_contig780.19053.1 ID=prot_Ecto-sp13_S_contig780.19053.1|Name=mRNA_Ecto-sp13_S_contig780.19053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=241bp MRPSMRSVLVDWICEVCDQFKLSSRTLFQAVDLIDRSLSAFEVPRGKLQLback to top mRNA from alignment at Ecto-sp13_S_contig780:11535..14376- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig780.19053.1 ID=mRNA_Ecto-sp13_S_contig780.19053.1|Name=mRNA_Ecto-sp13_S_contig780.19053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2842bp|location=Sequence derived from alignment at Ecto-sp13_S_contig780:11535..14376- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig780:11535..14376- >mRNA_Ecto-sp13_S_contig780.19053.1 ID=mRNA_Ecto-sp13_S_contig780.19053.1|Name=mRNA_Ecto-sp13_S_contig780.19053.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig780:11535..14376- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |