mRNA_Ecto-sp13_S_contig77954.19045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77954.19045.1
Unique NamemRNA_Ecto-sp13_S_contig77954.19045.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77954.19045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77954contigEcto-sp13_S_contig77954:143..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size468
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.7710457-UTR-Ecto-sp13_S_contig77954:142..1751681464049.7710457-UTR-Ecto-sp13_S_contig77954:142..175Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77954 143..175 +
1681464049.8010464-UTR-Ecto-sp13_S_contig77954:496..6101681464049.8010464-UTR-Ecto-sp13_S_contig77954:496..610Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77954 497..610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.7896125-CDS-Ecto-sp13_S_contig77954:175..4961681464049.7896125-CDS-Ecto-sp13_S_contig77954:175..496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77954 176..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77954.19045.1prot_Ecto-sp13_S_contig77954.19045.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77954 176..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77954.19045.1

>prot_Ecto-sp13_S_contig77954.19045.1 ID=prot_Ecto-sp13_S_contig77954.19045.1|Name=mRNA_Ecto-sp13_S_contig77954.19045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MWCSTAAPRADGSLPRCGPPVQFHFFVFRPYHHGPLPSLLPPTTCTRAQT
VLSAHVRINLCCIRLRVRVGSTWGLHATRWSALPLHSKRSCEKAVPYSKY
SVRSMP*
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mRNA from alignment at Ecto-sp13_S_contig77954:143..610+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77954.19045.1 ID=mRNA_Ecto-sp13_S_contig77954.19045.1|Name=mRNA_Ecto-sp13_S_contig77954.19045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77954:143..610+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCACGTAATGCAAGAGCGAGCGTGTTGGTTTGATGTGGTGTAGTACAGC
CGCGCCCCGGGCGGATGGCTCCCTCCCTCGATGTGGACCCCCAGTACAAT
TTCACTTCTTCGTTTTCCGTCCATACCATCATGGGCCCCTGCCTTCCCTT
TTGCCACCAACGACGTGCACACGGGCCCAGACAGTGTTATCCGCACATGT
TCGCATTAACCTTTGCTGCATACGCTTGCGAGTAAGGGTCGGTTCCACAT
GGGGGTTGCACGCAACACGGTGGTCAGCCCTGCCACTCCACTCGAAGCGA
TCCTGTGAGAAAGCGGTACCATACTCCAAATACAGTGTACGGAGTATGCC
ATGAACCACACAAGCACAAGCCGATGACTAACACTAAGACTACAAGCACC
CACGGAAACACGAGAAACGAGGGAGGACAAACACTCTCCACTTTTGCCCG
CCCCTTCTCATGTCCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77954:143..610+

>mRNA_Ecto-sp13_S_contig77954.19045.1 ID=mRNA_Ecto-sp13_S_contig77954.19045.1|Name=mRNA_Ecto-sp13_S_contig77954.19045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77954:143..610+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTGTAGTACAGCCGCGCCCCGGGCGGATGGCTCCCTCCCTCGATG
TGGACCCCCAGTACAATTTCACTTCTTCGTTTTCCGTCCATACCATCATG
GGCCCCTGCCTTCCCTTTTGCCACCAACGACGTGCACACGGGCCCAGACA
GTGTTATCCGCACATGTTCGCATTAACCTTTGCTGCATACGCTTGCGAGT
AAGGGTCGGTTCCACATGGGGGTTGCACGCAACACGGTGGTCAGCCCTGC
CACTCCACTCGAAGCGATCCTGTGAGAAAGCGGTACCATACTCCAAATAC
AGTGTACGGAGTATGCCATGA
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