mRNA_Ecto-sp13_S_contig7795.19043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7795.19043.1
Unique NamemRNA_Ecto-sp13_S_contig7795.19043.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7795.19043.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.760e-17
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  157 MKEFVAPASHELLPKPARASSPIWNYGVKVKDRSRGKWAFA 279
            MKEF APASHEL+PKPARASSPIWNYGVK+KDRSRGKWAFA
Sbjct:    1 MKEFEAPASHELVPKPARASSPIWNYGVKLKDRSRGKWAFA 41
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7795.19043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFP4_ECTSI2.760e-1792.68Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7795contigEcto-sp13_S_contig7795:186..806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size281
Hectar predicted targeting categorysignal peptide
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.6242774-CDS-Ecto-sp13_S_contig7795:185..3171681464049.6242774-CDS-Ecto-sp13_S_contig7795:185..317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7795 186..317 +
1681464049.6337225-CDS-Ecto-sp13_S_contig7795:657..8041681464049.6337225-CDS-Ecto-sp13_S_contig7795:657..804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7795 658..804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7795.19043.1prot_Ecto-sp13_S_contig7795.19043.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7795 186..804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7795.19043.1

>prot_Ecto-sp13_S_contig7795.19043.1 ID=prot_Ecto-sp13_S_contig7795.19043.1|Name=mRNA_Ecto-sp13_S_contig7795.19043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
SPLAGCTLAAAVITPADGQQTGGAVVPSAGAPVTVPRGETTANEEAEATS
AAMKEFVAPASHELLPKPARASSPIWNYGVKVKDRSRGKWAFA
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mRNA from alignment at Ecto-sp13_S_contig7795:186..806+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7795.19043.1 ID=mRNA_Ecto-sp13_S_contig7795.19043.1|Name=mRNA_Ecto-sp13_S_contig7795.19043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7795:186..806+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCACCGCTCGCGGGTTGCACGCTAGCTGCTGCTGTCATAACACCAGCTGA
TGGCCAGCAAACCGGCGGAGCCGTCGTTCCGTCAGCAGGGGCTCCAGTGA
CAGTCCCCCGTGGCGAGACAACAGCCAACGAGGTGCGAGGGGTGACTGCT
GCTGTACTAATTACGTCAAAAACGAACTGGTGACTGTGGTCCCCGTGGGT
GGTAGTGCAGCGTTCTCCGAGCTGGACTCTTGAGCGTGTTTTCGCTATGT
TGTCAAGCCTTGGGATTATTCTCATAACTTAGCGGCCAGGCGACAAGTGC
CTGATGTGTGTTGTTCTTCTTCAGGGTTTTTTCTAAACTAGCGGTAGGGT
GTGCCCCCTCCGTGGTTTCGGCTAGTTTCGTACGAATTCCCCAGTCCTCA
TTCGCCGAGCGACATTGGAACGCCAAATGCTGACTTCCGACACATTTCTT
TTTACCAAACCTGAACGCAAAGGAGGCTGAGGCTACCTCGGCTGCGATGA
AGGAGTTCGTGGCTCCGGCGTCTCACGAGCTCCTTCCAAAACCCGCTCGC
GCCTCCTCACCGATCTGGAACTATGGAGTAAAGGTGAAGGACCGTTCGAG
GGGCAAATGGGCCTTCGCTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7795:186..806+

>mRNA_Ecto-sp13_S_contig7795.19043.1 ID=mRNA_Ecto-sp13_S_contig7795.19043.1|Name=mRNA_Ecto-sp13_S_contig7795.19043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7795:186..806+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCACCGCTCGCGGGTTGCACGCTAGCTGCTGCTGTCATAACACCAGCTGA
TGGCCAGCAAACCGGCGGAGCCGTCGTTCCGTCAGCAGGGGCTCCAGTGA
CAGTCCCCCGTGGCGAGACAACAGCCAACGAGGAGGCTGAGGCTACCTCG
GCTGCGATGAAGGAGTTCGTGGCTCCGGCGTCTCACGAGCTCCTTCCAAA
ACCCGCTCGCGCCTCCTCACCGATCTGGAACTATGGAGTAAAGGTGAAGG
ACCGTTCGAGGGGCAAATGGGCCTTCGCT
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