mRNA_Ecto-sp13_S_contig7793.19041.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7793.19041.1
Unique NamemRNA_Ecto-sp13_S_contig7793.19041.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7793.19041.1 vs. uniprot
Match: D7FNX5_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX5_ECTSI)

HSP 1 Score: 320 bits (820), Expect = 3.370e-103
Identity = 173/229 (75.55%), Postives = 180/229 (78.60%), Query Frame = 1 
Query:  484 MAVARALGRVLRGNRRSGLNSGATPQHKKITSRAADGGGGKVLRRWRARQRQGRARRHPDPADGHLAAATNEVEKQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASTXXAVAAVAGDGDGGSGVRSANSSVVMNEGICVGVDGSGAALRPGKYDGEDVSPEAWTKVGELRARAERSDPNAGEEEKGLHTWLATGGGEGRAGLTDMDLLRFVMFRHGDVDAAWWQVR 1170
            MA+ARALGRVLRGNRRS LNSGATPQHKK TSRAADGG G +LRRWRARQ QGR RRHPDPADGHLAAAT+EV K+                              AAST X     A  GDGGSGVRSANSS V+NEGICVGVDGSG ALRPGKYDGEDVSPEAWTKVGELRARAERSDPNAGEEEKGLHTWLATGGGEGR GLTDMDLLRFVMFRHGDVDAAW Q++
Sbjct:    1 MAMARALGRVLRGNRRSRLNSGATPQHKKNTSRAADGGVGGLLRRWRARQGQGRGRRHPDPADGHLAAATDEVGKKTKAEAGGGAGKHRASIRESGGEVQANGDPAAASTAXXXXXXAVTGDGGSGVRSANSSFVVNEGICVGVDGSGPALRPGKYDGEDVSPEAWTKVGELRARAERSDPNAGEEEKGLHTWLATGGGEGRTGLTDMDLLRFVMFRHGDVDAAWRQLK 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7793.19041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNX5_ECTSI3.370e-10375.55CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7793contigEcto-sp13_S_contig7793:3994..7127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score321.2
Seed ortholog evalue6.5e-85
Seed eggNOG ortholog2880.D7FNX5
Model size1170
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.intermembrane phospholipid transfer
EggNOG OGsKOG1470@1,KOG1470@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-10_004660.1
Cds size1170
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.5449002-CDS-Ecto-sp13_S_contig7793:3993..45571681464049.5449002-CDS-Ecto-sp13_S_contig7793:3993..4557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7793 3994..4557 +
1681464049.5556924-CDS-Ecto-sp13_S_contig7793:5279..57021681464049.5556924-CDS-Ecto-sp13_S_contig7793:5279..5702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7793 5280..5702 +
1681464049.5648944-CDS-Ecto-sp13_S_contig7793:6392..65381681464049.5648944-CDS-Ecto-sp13_S_contig7793:6392..6538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7793 6393..6538 +
1681464049.573936-CDS-Ecto-sp13_S_contig7793:7090..71271681464049.573936-CDS-Ecto-sp13_S_contig7793:7090..7127Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7793 7091..7127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7793.19041.1prot_Ecto-sp13_S_contig7793.19041.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7793 3994..7127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7793.19041.1

>prot_Ecto-sp13_S_contig7793.19041.1 ID=prot_Ecto-sp13_S_contig7793.19041.1|Name=mRNA_Ecto-sp13_S_contig7793.19041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=390bp
MHAPSNSLLMLDPPHTRYGRRLALFTGALLLPVQQQPLLDGSIGSYLQNG
GAHESTSGGSVVGPAAAAAAAAAGGGGIPMAMRYSYCRRSIDALFAAGAT
AEEKDDEGAERSQQPSSNRDLQHDPLHHRHGKLDDDGPKPAQGFGRVAEL
TSQKRWQHLRPMAVARALGRVLRGNRRSGLNSGATPQHKKITSRAADGGG
GKVLRRWRARQRQGRARRHPDPADGHLAAATNEVEKQKAAEAGGGAGKHR
TSIRESGGEIQANSDPAAASTAAAVAAVAGDGDGGSGVRSANSSVVMNEG
ICVGVDGSGAALRPGKYDGEDVSPEAWTKVGELRARAERSDPNAGEEEKG
LHTWLATGGGEGRAGLTDMDLLRFVMFRHGDVDAAWWQVR
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mRNA from alignment at Ecto-sp13_S_contig7793:3994..7127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7793.19041.1 ID=mRNA_Ecto-sp13_S_contig7793.19041.1|Name=mRNA_Ecto-sp13_S_contig7793.19041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7793:3994..7127+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGCTCCCTCGAACAGCTTGCTCATGTTAGACCCTCCACATACTCG
CTACGGTCGACGACTGGCGCTGTTCACCGGCGCGCTCCTCCTGCCGGTAC
AGCAGCAACCGCTGCTCGATGGCTCTATCGGCTCATATCTTCAAAATGGA
GGAGCCCATGAGTCAACCTCAGGTGGCAGCGTAGTCGGCCCGGCGGCCGC
AGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAATACCTATGGCTATGCGCT
ATTCCTACTGCCGTAGGAGCATTGACGCTCTGTTTGCCGCGGGAGCAACG
GCGGAAGAGAAAGATGATGAAGGCGCGGAGCGTTCTCAGCAGCCCAGCAG
CAACCGTGACCTTCAACACGATCCCCTACATCATCGCCACGGAAAGCTCG
ACGACGACGGACCCAAGCCTGCACAAGGTTTCGGCCGTGTCGCCGAGCTG
ACAAGTCAGAAGAGGTGGCAGCACTTGCGCCCGATGGCTGTGGCTCGAGC
GCTCGGCCGAGTCTTGCGAGGGAACCGGCGGTCAGGGTTGAACTCGGGGG
CGACACCGCAGCATGTGAGGACACACCGACTGTACTACTGTACGCATTAC
AACATGTTGTGTCGGCTGTGGGTAGGACTCTGATGTGGCGTACAACAGGC
AGGAAGCTAGGACCAACCCAATAGATCCGTAATATGGAGACACAACGAAC
AGCGTGCTTTCCGTGTAGGGTCTGTTGCGGCGATACGAAGTCCACGGGCA
GAGAAAGTGTCTGACCCAAAAAATGAGCCATCCGAACTACTGTCGTCAAG
GTAGAGAGACATGCTGTTGCGTGGCCTCGAAGTGCACAGCCGGTGTTCCT
GTAAGTGTTTCATAGTGGTGGGAGCAAATGCAGAGTCGGGTTGTGGCGGA
CATTTCCACTTCCGAAAGCAGCTTGAGTGTAAAAACGCTCGTGGCATGAA
ACGCACCGTCTGTAATATTTAAACGATGGTAGAATATTTAGCTGTGGGAT
TAGGAATCGCCACGACAACCGCCGTCCTTTATTTGTCTATTTTGACCCAA
CGAATAAATCTCTATCTCAGAAAAGAGCTCCCGATTCTGTGTTGCTTTGA
GAAACCTTTCGCCAGGCTCAGCATGACGCGTTGCCGCTCGCACATGGGCT
CTCAGTTGGGGCCGTCACAACTCCGCAAAACCCCTAAACCATGAGAGGTT
GACTTCTCACCACCAGGCTATTACTCTTACCTCCCTTCTTTCACCACCCC
AAATTCGCGCCGCACGCACGCTCTCCATCATGACAGAAAAAAATCACGAG
TCGAGCTGCAGATGGCGGAGGTGGGAAGGTTCTTCGAAGATGGCGAGCAA
GGCAGCGTCAAGGGCGCGCGCGAAGGCACCCTGACCCTGCAGATGGGCAC
CTGGCCGCAGCAACCAACGAGGTCGAAAAGCAAAAGGCGGCGGAAGCAGG
CGGGGGGGCAGGGAAACACCGCACGAGCATCCGCGAATCGGGAGGAGAGA
TTCAGGCGAACAGCGACCCCGCTGCTGCGTCTACAGCAGCTGCAGTCGCG
GCTGTCGCTGGTGATGGTGATGGTGGCAGCGGTGTCAGGTCTGCGAACAG
CAGCGTCGTTATGAACGAGGGCATCTGCGTTGGCGTCGACGGGAGTGGCG
CCGCGTTGCGGCCGGGCAAGTACGACGGAGAGGACGTGTCGCCGGAGGCA
TGGACCAAGGTACAGATATTTGGAAGGTCGCGCCGGTACCCCTTGAGCCA
ATAGGTGTCGGCGCTGGATTGGCACGGTGCGGAGGACACCGTATATGACA
CAAGATGACACACCCCCTGGACCGATTTTCAAAGCTCGATTACTCCACGA
CGAAGAAGATGCATAGACGAAAGGATACGTTTTCAGAGAGCTCTCGACCA
GACGGCTTCAATGCCACCGTTTTCGACCCTGCGACTGTTGCTGCTGTTGA
AAAATCGAGCTTTGAAAATCGGTCCAGGGTGTGTGTTATCTTGTGTCATA
TACGGTAGTCCTCGTAGTTTTGCCCACAATACCTGTCGAGGGAAGGGGCA
GAGTGATGTTCCTCGCGGTTGTAGTGTTCAATTGTATGCATCACATCGAC
TGGCGTTTCGACGTGGATTTTCGGATCGGTTGTGGGTGGTGTGGCGCAGC
GTGTGGGAAACGGTTTGGCCGGGAGCGCCGCCACACGGTAGTATTGATGA
AACTTCAACTCGCTTCTTGCACCTATCATTCCGCAACTCTCCAACACGAC
ATTTTTTACACACGGCAGCGCAAACCTTTGCTTCAATGGTACATAGAACA
TGAGGTCGAAACGACTCCACACATATCTACGCGGTGCGACTTGGCTACAA
TGCTTACAGCGACAAACTTGATTTTTGGCGCTGTGTGGTGTGGGGGAAGG
TCGGTGAGCTTCGGGCACGGGCAGAAAGATCCGACCCGAACGCGGGAGAG
GAAGAGAAGGGTTTGCATACATGGTTGGCCACCGGCGGTGGCGAAGGGAG
AGCAGGGCTCACGGACATGGACCTTCTTCGTTTCGTCATGTTCAGGTAAG
GAGAAATCGAGGAATTGGGTGTAGCGGGAAACACAGCATACCAACAGCAT
TGGGGCAGCGTTACGGGGGTATGGGAGAGCGAGGTAGGTACTTGATTGAG
GAGAGAGGGGGTATGAGATACATGCGATTTTCACGGAATATAGCCTTGTC
GTAAATGTTCGGGTTTTTTTTTCATCTTTAAAGGGTTACAATATAGTCTA
TATATATTGCCTATTAGTATTAAACACGCAGAGATGATAGGGCTCCGGAC
CCTGTCTCCGTTGATCTCCGTTCGTATGTAGTTTTTTTACCTCCTGTTAA
GTTGTGTTTTTCTCGTCAGTGCGGTGGCTTAGTATCCGCGTCCAGGTCTA
CGGTATGTCTTGCGGTTCACCACAGAGCGGTATGCATGCCACCTACGTGC
GTCCGGTAGACTCGAAATCATCGGTGTTGTATCTGCAGGCTTTCTTGATG
AGTAATGGACGCGTGTTTCTTTATACGCCCCCAGTTCGGTTGTTTCCTTA
CCATTGTTCTGCGCTGTTCCTTCTGTGCGGCTCCGTTGTTGGTGCAGACA
CGGGGACGTGGATGCTGCCTGGTGGCAGGTAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7793:3994..7127+

>mRNA_Ecto-sp13_S_contig7793.19041.1 ID=mRNA_Ecto-sp13_S_contig7793.19041.1|Name=mRNA_Ecto-sp13_S_contig7793.19041.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1170bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7793:3994..7127+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATGCTCCCTCGAACAGCTTGCTCATGTTAGACCCTCCACATACTCG
CTACGGTCGACGACTGGCGCTGTTCACCGGCGCGCTCCTCCTGCCGGTAC
AGCAGCAACCGCTGCTCGATGGCTCTATCGGCTCATATCTTCAAAATGGA
GGAGCCCATGAGTCAACCTCAGGTGGCAGCGTAGTCGGCCCGGCGGCCGC
AGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAATACCTATGGCTATGCGCT
ATTCCTACTGCCGTAGGAGCATTGACGCTCTGTTTGCCGCGGGAGCAACG
GCGGAAGAGAAAGATGATGAAGGCGCGGAGCGTTCTCAGCAGCCCAGCAG
CAACCGTGACCTTCAACACGATCCCCTACATCATCGCCACGGAAAGCTCG
ACGACGACGGACCCAAGCCTGCACAAGGTTTCGGCCGTGTCGCCGAGCTG
ACAAGTCAGAAGAGGTGGCAGCACTTGCGCCCGATGGCTGTGGCTCGAGC
GCTCGGCCGAGTCTTGCGAGGGAACCGGCGGTCAGGGTTGAACTCGGGGG
CGACACCGCAGCATAAAAAAATCACGAGTCGAGCTGCAGATGGCGGAGGT
GGGAAGGTTCTTCGAAGATGGCGAGCAAGGCAGCGTCAAGGGCGCGCGCG
AAGGCACCCTGACCCTGCAGATGGGCACCTGGCCGCAGCAACCAACGAGG
TCGAAAAGCAAAAGGCGGCGGAAGCAGGCGGGGGGGCAGGGAAACACCGC
ACGAGCATCCGCGAATCGGGAGGAGAGATTCAGGCGAACAGCGACCCCGC
TGCTGCGTCTACAGCAGCTGCAGTCGCGGCTGTCGCTGGTGATGGTGATG
GTGGCAGCGGTGTCAGGTCTGCGAACAGCAGCGTCGTTATGAACGAGGGC
ATCTGCGTTGGCGTCGACGGGAGTGGCGCCGCGTTGCGGCCGGGCAAGTA
CGACGGAGAGGACGTGTCGCCGGAGGCATGGACCAAGGTCGGTGAGCTTC
GGGCACGGGCAGAAAGATCCGACCCGAACGCGGGAGAGGAAGAGAAGGGT
TTGCATACATGGTTGGCCACCGGCGGTGGCGAAGGGAGAGCAGGGCTCAC
GGACATGGACCTTCTTCGTTTCGTCATGTTCAGACACGGGGACGTGGATG
CTGCCTGGTGGCAGGTAAGG
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