mRNA_Ecto-sp13_S_contig7786.19034.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7786.19034.1
Unique NamemRNA_Ecto-sp13_S_contig7786.19034.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7786.19034.1 vs. uniprot
Match: D7FHF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF3_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 5.550e-22
Identity = 53/68 (77.94%), Postives = 56/68 (82.35%), Query Frame = 3 
Query:  339 DREGN*GKEGGGGGGVDVGCVFWVAAAEAWNGGVLVLPDGGRGSGAGNCLVQGERQGRPQGWHGRCQV 542
            D EG  G+E GGGG +DVG VFWVAA +A NGG LVLPDGGRG GAGNCLVQGERQGRPQG HGRCQ 
Sbjct:   37 DHEGKQGEESGGGG-IDVGVVFWVAATKARNGGFLVLPDGGRGPGAGNCLVQGERQGRPQGRHGRCQA 103
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7786.19034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHF3_ECTSI5.550e-2277.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7786contigEcto-sp13_S_contig7786:4350..5844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size933
Hectar predicted targeting categoryother localisation
Exons3
Cds size933
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.0506296-CDS-Ecto-sp13_S_contig7786:4349..47841681464049.0506296-CDS-Ecto-sp13_S_contig7786:4349..4784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7786 4350..4784 +
1681464049.0602965-CDS-Ecto-sp13_S_contig7786:4975..50791681464049.0602965-CDS-Ecto-sp13_S_contig7786:4975..5079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7786 4976..5079 +
1681464049.069553-CDS-Ecto-sp13_S_contig7786:5450..58441681464049.069553-CDS-Ecto-sp13_S_contig7786:5450..5844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7786 5451..5844 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7786.19034.1prot_Ecto-sp13_S_contig7786.19034.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7786 4350..5844 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7786.19034.1

>prot_Ecto-sp13_S_contig7786.19034.1 ID=prot_Ecto-sp13_S_contig7786.19034.1|Name=mRNA_Ecto-sp13_S_contig7786.19034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
GGAGHHEEEKEESLDIEDACSQATLAAAAAAAAAAAGASAGGKSSSGGEA
KGEEEVVEGAGAGGYSSRLRNKRRKVVAGSGGSSTATASPAPAGRAAAAA
TGAGAAAKKGGKKIARGTKGKRAAAAVASTSAASSGLPRLRPGTEVFSCF
RMAGGARGPGTVWYRGSVKVAHRDGTVDVRYEDEEVRKNIPRSHLTTTLP
SVVSDGLSTEIRGCTLWSMGGGSGGGGGRSVKQEAGRFEEEDEGAPGNRG
RLSRRPRDPLHLRRSRAAGGATAAAAAAHANNNHPSSSSSSSGAAAAVAA
EAAGGGDRRGA
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mRNA from alignment at Ecto-sp13_S_contig7786:4350..5844+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7786.19034.1 ID=mRNA_Ecto-sp13_S_contig7786.19034.1|Name=mRNA_Ecto-sp13_S_contig7786.19034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7786:4350..5844+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTGCCGGCCACCACGAGGAAGAGAAGGAAGAGTCGCTGGATATCGA
GGACGCTTGTTCCCAAGCCACCCTGGCAGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCGGGGGCGTCGGCCGGCGGCAAGAGCAGCAGCGGGGGAGAAGCA
AAGGGCGAGGAAGAGGTGGTGGAAGGCGCCGGCGCCGGCGGCTACTCCTC
TCGCCTCCGAAACAAGCGGCGGAAGGTAGTTGCCGGCAGTGGGGGCTCCT
CCACCGCGACTGCTTCTCCTGCCCCCGCCGGCCGTGCTGCTGCGGCCGCC
ACCGGGGCCGGAGCCGCCGCGAAGAAAGGCGGCAAGAAGATCGCGAGGGG
AACTAAGGGAAAGAGGGCGGCGGCGGCGGTGGCGTCGACGTCGGCTGCGT
CTTCTGGGTTGCCGCGGCTGAGGCCTGGAACGGAGGTGCGCTTCGCGTGG
CGATCAAGAATCGGTCATCTGCGCTTGTTGAATTACGCCCCACCATTACC
ATCACCAACATCACCACTACCACCACCGAATTTCTCGGGTTTTGTTCGTC
TGCTGACCACCCTCGTTTGGTTATTTTGTGTTTCTTCGCTGGCATGTGTC
GTCGGCCTGTTCTTCGCACGTGCCAGGTGTTCTCGTGCTTCCGGATGGCG
GGAGGGGCTCGGGGGCCGGGAACTGTCTGGTACAGGGGGAGCGTCAAGGT
CGCCCACAGGGATGGCACGGTCGATGTCAGGTATTGCAAGCTGGCTTAGC
TTTTGCTTTTCGTGCTATTGATTGGTGCTGCGGTCTTGTCTCTCTGTCTC
GGTGTGCGTCTCTCTCTCGCTTCCTCTCTCCCTGTTTCTCCCTGTTTCTC
CCTGTCTTTCTCTGCCTCTCTCGATGCCTCTCTCTATGCCTCTCTGTTAC
GTCTTTCTTCCTGTCTGTCTCTATCTCTCGAGTGTGAACGAATGTGTGCG
GGTGTTGTATTTTCAGCCACGCATTTGCAACCTCGACACCGTGGAAGGAG
GTGAACACGGGGGCGCAATCCAAACGAAAGGGATGTGCGTGTGTGTGTCC
CCCCATCTCCTGACGTTCACACGTATGTGCGCATTTTTCTTTTTTATGAA
GGTACGAGGACGAGGAAGTACGCAAGAACATCCCGAGAAGCCACCTGACG
ACCACGCTCCCGTCGGTGGTCTCCGACGGCCTGTCTACGGAGATACGGGG
ATGCACGCTGTGGAGCATGGGGGGTGGCAGCGGCGGCGGCGGCGGAAGGA
GCGTGAAGCAGGAGGCTGGGAGGTTCGAGGAGGAGGATGAAGGGGCCCCG
GGGAATCGCGGGCGTCTCTCGCGACGGCCGCGGGACCCCCTCCACCTACG
AAGGTCCCGGGCTGCGGGCGGAGCAACAGCGGCGGCAGCGGCCGCCCACG
CGAACAACAACCATCCCTCCTCTTCGTCTTCCTCGAGCGGTGCAGCGGCG
GCTGTGGCTGCGGAGGCAGCCGGCGGCGGAGATCGAAGAGGAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7786:4350..5844+

>mRNA_Ecto-sp13_S_contig7786.19034.1 ID=mRNA_Ecto-sp13_S_contig7786.19034.1|Name=mRNA_Ecto-sp13_S_contig7786.19034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7786:4350..5844+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGTGCCGGCCACCACGAGGAAGAGAAGGAAGAGTCGCTGGATATCGA
GGACGCTTGTTCCCAAGCCACCCTGGCAGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCGGGGGCGTCGGCCGGCGGCAAGAGCAGCAGCGGGGGAGAAGCA
AAGGGCGAGGAAGAGGTGGTGGAAGGCGCCGGCGCCGGCGGCTACTCCTC
TCGCCTCCGAAACAAGCGGCGGAAGGTAGTTGCCGGCAGTGGGGGCTCCT
CCACCGCGACTGCTTCTCCTGCCCCCGCCGGCCGTGCTGCTGCGGCCGCC
ACCGGGGCCGGAGCCGCCGCGAAGAAAGGCGGCAAGAAGATCGCGAGGGG
AACTAAGGGAAAGAGGGCGGCGGCGGCGGTGGCGTCGACGTCGGCTGCGT
CTTCTGGGTTGCCGCGGCTGAGGCCTGGAACGGAGGTGTTCTCGTGCTTC
CGGATGGCGGGAGGGGCTCGGGGGCCGGGAACTGTCTGGTACAGGGGGAG
CGTCAAGGTCGCCCACAGGGATGGCACGGTCGATGTCAGGTACGAGGACG
AGGAAGTACGCAAGAACATCCCGAGAAGCCACCTGACGACCACGCTCCCG
TCGGTGGTCTCCGACGGCCTGTCTACGGAGATACGGGGATGCACGCTGTG
GAGCATGGGGGGTGGCAGCGGCGGCGGCGGCGGAAGGAGCGTGAAGCAGG
AGGCTGGGAGGTTCGAGGAGGAGGATGAAGGGGCCCCGGGGAATCGCGGG
CGTCTCTCGCGACGGCCGCGGGACCCCCTCCACCTACGAAGGTCCCGGGC
TGCGGGCGGAGCAACAGCGGCGGCAGCGGCCGCCCACGCGAACAACAACC
ATCCCTCCTCTTCGTCTTCCTCGAGCGGTGCAGCGGCGGCTGTGGCTGCG
GAGGCAGCCGGCGGCGGAGATCGAAGAGGAGCG
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