mRNA_Ecto-sp13_S_contig7786.19032.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7786.19032.1
Unique NamemRNA_Ecto-sp13_S_contig7786.19032.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7786.19032.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 8.100e-30
Identity = 88/97 (90.72%), Postives = 89/97 (91.75%), Query Frame = 1 
Query:  109 EGAPGAAPREGQEGDAGRAAAEDGHRDARSERYGEAEAXXXXXXXXXXXXXXXXXXXEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEK 399
            EGAPGAAP EGQEGDAGRAAAEDGHR ARSE Y EAEAX  XXXXXXXXXXXXXXX EAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQ E+
Sbjct:  837 EGAPGAAPGEGQEGDAGRAAAEDGHRGARSEGYDEAEAXAAXXXXXXXXXXXXXXXAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQEEE 933
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BLAST of mRNA_Ecto-sp13_S_contig7786.19032.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.610e-25
Identity = 85/106 (80.19%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:  109 EGAPGAAPREGQEGDAGRAAAEDGHRDARSERYGEAEAXXXXXXXXXXXXXXXXXXXEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK 426
            EGAPGAA            AA DGHR ARSE Y EAE XXXXXXXXXXXXXXX    EAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK
Sbjct: 1074 EGAPGAALXXXXXXXXXXXAA-DGHRGARSEGYNEAEXXXXXXXXXXXXXXXXREKAEAKEVDLLRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRK 1178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7786.19032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1B4_9PHAE8.100e-3090.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHF4_ECTSI1.610e-2580.19Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7786contigEcto-sp13_S_contig7786:243..2540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size643
Hectar predicted targeting categoryother localisation
Exons3
Cds size642
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.0074742-CDS-Ecto-sp13_S_contig7786:242..6321681464049.0074742-CDS-Ecto-sp13_S_contig7786:242..632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7786 243..632 +
1681464049.016833-CDS-Ecto-sp13_S_contig7786:1057..11251681464049.016833-CDS-Ecto-sp13_S_contig7786:1057..1125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7786 1058..1125 +
1681464049.0256202-CDS-Ecto-sp13_S_contig7786:2356..25401681464049.0256202-CDS-Ecto-sp13_S_contig7786:2356..2540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7786 2357..2540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7786.19032.1prot_Ecto-sp13_S_contig7786.19032.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7786 243..2540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7786.19032.1

>prot_Ecto-sp13_S_contig7786.19032.1 ID=prot_Ecto-sp13_S_contig7786.19032.1|Name=mRNA_Ecto-sp13_S_contig7786.19032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
SAAAAASAGGSSSPTTAITMAGGGTREGTSSSDGGGEGAPGAAPREGQEG
DAGRAAAEDGHRDARSERYGEAEAEAAEAAREAEAEAEAREKAEAKEVDL
LRKLAVGLHPVLLVEPLTTVREVTKWYTVQLEKSFKSYRHRKKKEKQAAL
EARNRAGGGPADASAAAAAAAASPTGASYESPAAAGLSALMSRRKMVEQR
TKAGAGAAAGGVDD
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mRNA from alignment at Ecto-sp13_S_contig7786:243..2540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7786.19032.1 ID=mRNA_Ecto-sp13_S_contig7786.19032.1|Name=mRNA_Ecto-sp13_S_contig7786.19032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2298bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7786:243..2540+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGCTGCTGCTGCCGCTTCTGCAGGTGGTTCTTCCAGCCCCACCACTGC
CATTACCATGGCTGGTGGTGGCACACGGGAGGGCACCAGCAGCAGCGACG
GCGGAGGCGAAGGCGCACCGGGAGCAGCTCCGAGGGAGGGGCAAGAAGGA
GACGCTGGGCGGGCGGCGGCAGAAGACGGTCACCGCGATGCTCGATCGGA
GCGTTACGGTGAGGCGGAAGCGGAGGCGGCGGAAGCCGCGAGGGAAGCTG
AGGCTGAGGCCGAGGCTAGGGAGAAGGCAGAGGCGAAGGAGGTCGATCTG
CTGCGGAAGCTGGCGGTGGGGCTGCACCCGGTGCTGCTGGTGGAGCCGCT
CACGACCGTGCGGGAAGTTACCAAGTGGTACACGGTTCAGGTAGATCATG
TGGTTGCTGTCTGCTGCTGCTGTTGCTGTTGCTGCTGCTGTTTCTGTTGC
TATCGATGTTGATATTTGTTTTTGTCGTTGTTGTTTTTGTTGTTCTTCTT
CTCGTTCTTGTTCTTCTATGTCTTGATGATGTTTGTTGGTGTTGCTGTCG
TTGTTTTTGATGCTGAGGTGGTCGTCGTCGTCGTCGTCGTCGTCGTGGGT
GGTCGTTGTCCTGCGTAAGTTGCCGAAGATATCACACACCCTGGACCGAT
TTTTGTATGCCACAAATGTCAGCGCCGTTGCATTTGCACCACGAACAGTA
CGTCATGCGCCCTACAGAGTGGATGGTGTGCTTTTGGTCGTTTGGTGAGT
GTCGTTGTTGTAGACAACCCTCGAAGCGTCACCTATTCCGCCGCGTGCTT
TTTTTTTCTTTTCAGCTGGAGAAATCGTTCAAGAGCTACCGGCATAGGAA
GAAGAAGGAGAAGCAAGCGGCTTTGGAGGCCAGGTGAGCACGGCGGGGAG
AGAGGGGATACGTTGGTCCCAGCAGCGTTTGCTTTTGTTTTTTCTACTTG
TCAACAAGAACAGATTGGAGAACAGCATGCAATCTGGTCAAGTTGGGATA
GGGAATAAAAGGTGTCTGCGTACCCCCCTCCGTGTTCAATTTCCTCATGT
ACTCCATTTGTGGCGAGGGCAGTCCATGCGCTGAAGGAGGGGGGGGGGGG
GCACGGGGGCTGGGACCGCGTTGGCGAGGATATTGCTGTAGGTTGCGTAA
CGCAAGATACCACACACCCCCCTCGAGCCCGTTTTCAAAGCTTGGTTACC
TGAACCAAGAAGAGGATGCCAAAATCAGGCGGCGCGTTTTTTCGTAAAGC
TCTCGACGAGACGATTCCAAGGCCACCCGCCATTTTCGACGCCGTCGCTT
TTGTTTTTCCTGCCGAATAATCGACCTCTGAAAATCGTTCCGGGAGGTGT
GATAGCTGATGCAACGTACGGTATTATTATTTATCTATGAACTAGAGAGT
GGAGGGTTCGTACCTGTAACTAAAACCCAACCAAGCTTGATGTCCTCGCG
AGGGCTACTGCGGCGGTGACATTCCGTCGCCGCGTACATGCACCACGTTT
TTTTTTTTTTTGCCTGTTGTCGAGAGAATAGGGGCGGTTCGTGCGAGTCA
GCTCAATCAGGCCGAAAAAGCAGAACGGTGTTGGCAGGAGCAAGGCATCG
ATCGCGTCCTTGCAGCGAGTATGCACCACGATTCTTGCTGGTTTTTGGCC
TGTTTTCGAGAGTAAAGGTGGTTCGTGCGAGTCAGCTCAATCATGACGGA
AAAGAAAACGTGATGATGGCAGGAGCAAGACGGCCGACAACTATATACAC
CAGCGAGAACACTGATTAATGACAATGACCGCGACGATAGCAACATGGCG
TAGCCATAGCGAAGAACCCCCACTGGTGCCCGACCCCCCTGAAATCTCGC
TCGCCCCCGAGATGCCCCCATCTCTAGCAAGAAGATCACCAGCAACAATC
AATGATAACGACAATAACAATAACGACAACCGCATAGAACCCCTGATCCT
CGACCCCCCATGGCAAGGAACTACTGCAGTAGAGAAGCGGTAATCCCACT
CCCACCCACCCCCACCCACCCCCACCGTCGCTCATTCTCTACAGACGCCT
CATGACTACCAACGAGAGCACCAGCAACCCCCCCCCCCATCCCGACTGTC
TCCTCGCTTCCCAGGAATCGTGCAGGGGGAGGTCCTGCAGACGCCTCGGC
CGCGGCCGCAGCCGCAGCTGCTAGCCCCACCGGTGCCTCGTACGAATCTC
CCGCTGCTGCCGGGTTATCCGCTCTGATGAGCCGCAGGAAAATGGTCGAG
CAACGGACGAAGGCCGGGGCGGGGGCGGCGGCGGGGGGAGTGGATGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7786:243..2540+

>mRNA_Ecto-sp13_S_contig7786.19032.1 ID=mRNA_Ecto-sp13_S_contig7786.19032.1|Name=mRNA_Ecto-sp13_S_contig7786.19032.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7786:243..2540+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGCTGCTGCTGCCGCTTCTGCAGGTGGTTCTTCCAGCCCCACCACTGC
CATTACCATGGCTGGTGGTGGCACACGGGAGGGCACCAGCAGCAGCGACG
GCGGAGGCGAAGGCGCACCGGGAGCAGCTCCGAGGGAGGGGCAAGAAGGA
GACGCTGGGCGGGCGGCGGCAGAAGACGGTCACCGCGATGCTCGATCGGA
GCGTTACGGTGAGGCGGAAGCGGAGGCGGCGGAAGCCGCGAGGGAAGCTG
AGGCTGAGGCCGAGGCTAGGGAGAAGGCAGAGGCGAAGGAGGTCGATCTG
CTGCGGAAGCTGGCGGTGGGGCTGCACCCGGTGCTGCTGGTGGAGCCGCT
CACGACCGTGCGGGAAGTTACCAAGTGGTACACGGTTCAGCTGGAGAAAT
CGTTCAAGAGCTACCGGCATAGGAAGAAGAAGGAGAAGCAAGCGGCTTTG
GAGGCCAGGAATCGTGCAGGGGGAGGTCCTGCAGACGCCTCGGCCGCGGC
CGCAGCCGCAGCTGCTAGCCCCACCGGTGCCTCGTACGAATCTCCCGCTG
CTGCCGGGTTATCCGCTCTGATGAGCCGCAGGAAAATGGTCGAGCAACGG
ACGAAGGCCGGGGCGGGGGCGGCGGCGGGGGGAGTGGATGAC
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