mRNA_Ecto-sp13_S_contig7780.19029.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7780.19029.1
Unique NamemRNA_Ecto-sp13_S_contig7780.19029.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7780.19029.1 vs. uniprot
Match: A0A6H5JCV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV8_9PHAE)

HSP 1 Score: 433 bits (1113), Expect = 4.030e-142
Identity = 293/383 (76.50%), Postives = 300/383 (78.33%), Query Frame = 1 
Query:    1 LKVDSLLDELYVLFSPRVFLLADVKPLVDESYHQRIDELCDKARTGGSXXXXXXXX-DGLSFPPTLDALASSPGSSNGNNINSRTAAGIGGGSGIKAEPRSTNPIRGGSGAGSEAEASAAGXXXSEARSGTSSLLSPPTMVDATSGGGSSGKASAPARSNDELEGMLSLRRGKESSPSTRVLSSDVANTTDMADLLSGIEPGVDAALLDFMMCDNDNTPVLGAAAPPAEPPTLNXXXXXXXXXXXXPWAFSSPFPPTMEPVIPRGNRATSGTSPTKKRRASEDCSSSVPAAAGRMSAGSTDATGNSDNNDSGDDRTTSPSMMWSRVGSAPNLTNLSCRIQATLPSAHSRGQQQXXXXXXXXXXXXXXXXXXRCSVAISSGGTS 1146
            L VD+ LDELYVLFSPRV+LLADVKPLVDESYHQRIDELCDKARTGGSXXXXXXXX DGLSFPPTL+ALASSPGSSNGNNINSRTA G GGGSGIKAEPRSTNPIRGGSGA          XX SEARSGTSSLLS PTM DATS GGSSGKASAPARSNDELEGML  RRGKES    RVLSSDVA+TTDMADLLSGIEPGVDA                                         PW  S PF PTMEPVIP  N ATSGTSPTKKRR SED SS VPAAAGRMSAGSTDA  NSDNN+SGD RT SPSM+WSRVGSAPNLTNLS  IQATLPSAHSRGQQ XXXXXXXXXXXXXXXXXXRCSVAIS+GGTS
Sbjct:   46 LNVDAFLDELYVLFSPRVYLLADVKPLVDESYHQRIDELCDKARTGGSXXXXXXXXXDGLSFPPTLNALASSPGSSNGNNINSRTAPGTGGGSGIKAEPRSTNPIRGGSGAXXXXXXXXXXXXSSEARSGTSSLLSSPTMADATSSGGSSGKASAPARSNDELEGMLFRRRGKES----RVLSSDVADTTDMADLLSGIEPGVDA-----------------------------------------PWVVSGPFSPTMEPVIPSCNGATSGTSPTKKRRVSEDRSSCVPAAAGRMSAGSTDAAANSDNNNSGDGRTASPSMIWSRVGSAPNLTNLSFSIQATLPSAHSRGQQXXXXXXXXXXXXXXXXXXXRCSVAISNGGTS 383
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7780.19029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCV8_9PHAE4.030e-14276.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7780contigEcto-sp13_S_contig7780:484..2542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1332
Hectar predicted targeting categoryother localisation
Exons3
Cds size1332
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464048.8469682-CDS-Ecto-sp13_S_contig7780:483..10041681464048.8469682-CDS-Ecto-sp13_S_contig7780:483..1004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7780 484..1004 +
1681464048.8592525-CDS-Ecto-sp13_S_contig7780:1294..13851681464048.8592525-CDS-Ecto-sp13_S_contig7780:1294..1385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7780 1295..1385 +
1681464048.8696063-CDS-Ecto-sp13_S_contig7780:1822..25421681464048.8696063-CDS-Ecto-sp13_S_contig7780:1822..2542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7780 1823..2542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7780.19029.1prot_Ecto-sp13_S_contig7780.19029.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7780 484..2542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7780.19029.1

>prot_Ecto-sp13_S_contig7780.19029.1 ID=prot_Ecto-sp13_S_contig7780.19029.1|Name=mRNA_Ecto-sp13_S_contig7780.19029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=444bp
LKVDSLLDELYVLFSPRVFLLADVKPLVDESYHQRIDELCDKARTGGSGG
GGGGGGDGLSFPPTLDALASSPGSSNGNNINSRTAAGIGGGSGIKAEPRS
TNPIRGGSGAGSEAEASAAGGGSSEARSGTSSLLSPPTMVDATSGGGSSG
KASAPARSNDELEGMLSLRRGKESSPSTRVLSSDVANTTDMADLLSGIEP
GVDAALLDFMMCDNDNTPVLGAAAPPAEPPTLNIQQQQPQQQQQQPWAFS
SPFPPTMEPVIPRGNRATSGTSPTKKRRASEDCSSSVPAAAGRMSAGSTD
ATGNSDNNDSGDDRTTSPSMMWSRVGSAPNLTNLSCRIQATLPSAHSRGQ
QQQLQPASSSATATTSTPRPRCSVAISSGGTSKKQSTTGRPPSGASANRG
GGGNLQMQQAVVGGGGVSGGSPSNSTGGSEKSSGGGGSSSNNAM
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mRNA from alignment at Ecto-sp13_S_contig7780:484..2542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7780.19029.1 ID=mRNA_Ecto-sp13_S_contig7780.19029.1|Name=mRNA_Ecto-sp13_S_contig7780.19029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2059bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7780:484..2542+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAAGGTGGACTCCCTTCTGGACGAACTCTACGTGCTCTTCTCTCCGCG
AGTCTTTCTGCTGGCGGACGTGAAGCCTCTCGTCGACGAGTCGTACCACC
AGCGTATAGACGAGCTTTGCGACAAAGCCCGCACCGGCGGCAGTGGCGGC
GGCGGCGGCGGCGGCGGGGACGGTTTGTCCTTCCCCCCTACCCTAGACGC
CTTGGCCTCGTCCCCGGGAAGTAGCAACGGCAACAACATCAACAGCCGCA
CGGCGGCGGGTATAGGTGGCGGGAGTGGCATCAAGGCCGAACCGCGGTCG
ACGAACCCAATCCGCGGTGGCTCCGGTGCCGGGAGTGAGGCCGAGGCATC
CGCGGCTGGCGGGGGGAGTTCTGAGGCCAGGAGCGGTACCTCGTCCCTGC
TCTCACCTCCCACGATGGTAGACGCGACCTCTGGTGGTGGCAGTAGCGGC
AAGGCTTCAGCGCCTGCACGAAGCAACGACGAGCTGGAGGGGATGCTATC
TCTTAGGCGAGGAAAAGAGAGGTGGAGCGTGTGTCACAGGAGTGGCTTGA
AACTACACGTGACCCTCAACCGTTGTCTTCTGGCCTGGCCGGGTCACCCG
ACCGCGTGTGCTTGTTTATGCCCGTCGCATGCCCCCCCCTCCTCAAGCTT
GGACGTATGGTGGAGAAATTACGCGCGTGCGCCCCCCCCACCCCTCCCCA
ATACGCGTGCCACCTCGTTGCTTTAACTGTTTCCTCGACAAACCGGGCAC
GCCCAATGTAAATACGCCCCTCCCTGCACTATGAAACCTCTCTCACGACA
AACGCTTCCAGCTCTCCCAGCACCCGCGTGCTATCGTCGGACGTCGCAAA
CACCACGGACATGGCGGACCTCCTGTCCGGCATCGAGCCCGGTGTAGATG
CTGTAAGTTCGGTTCAGCGTCCCATGACACTCACACCGCCTCATCCCGTT
CCTACGATTTCCCGTCCATCAGAGACGCCTAATCTTCTGGCTGACGATCC
TCACGCGCGTTTGTTTTTTACGGGTCAAAAACGTACGCACGCCGCGCGGC
GTTTGCGTGCGGTGCCATGAATCGATCGCATGCCGCGCGTGATTCGTTGT
GAAAGTGCGTCTCGCTATGTAGCGCCCGGCCTCGTGGCGAAGCACGGCGG
CCGCCGTCCCTACGGCCGTACGCAACAACGAACACCCACGCCGGCCGATG
TATTTTGGCGAACGTCGGTGGCGTTGTTTATCCCTTCCGACTATACTGGA
ACGGTACATTGTTTCACAAGCATCCTACCTGATTCCTCCGTCCATTTGTC
GTCGTGTCTGTCTTCTTCTCTCGCCTCTCGACTAACAAGGCCCTCCTTGA
CTTCATGATGTGCGACAACGACAACACGCCGGTCCTCGGCGCCGCCGCGC
CGCCTGCGGAGCCCCCAACTCTCAACATCCAACAGCAACAGCCCCAGCAG
CAGCAGCAGCAGCCGTGGGCGTTTTCCAGCCCGTTTCCTCCGACGATGGA
GCCGGTGATTCCTAGGGGCAACAGGGCGACATCTGGGACGTCCCCAACCA
AGAAGAGGCGCGCATCAGAGGATTGTTCCTCTAGCGTGCCCGCTGCCGCA
GGCCGTATGTCAGCGGGCTCAACCGATGCCACTGGCAACAGCGACAACAA
CGACAGCGGCGACGACAGGACGACCTCGCCCTCGATGATGTGGAGCCGAG
TGGGGTCGGCCCCGAACCTTACCAACTTGTCGTGCCGCATCCAAGCCACC
CTTCCGAGTGCCCACAGCCGAGGGCAGCAGCAGCAGCTGCAGCCGGCATC
GTCTTCGGCTACGGCCACCACCTCGACGCCTCGCCCGCGGTGTAGCGTTG
CCATCTCGAGCGGCGGCACGTCGAAGAAGCAGTCGACGACCGGTAGGCCC
CCGTCCGGCGCGTCAGCCAACCGTGGCGGCGGCGGAAACCTCCAGATGCA
GCAAGCCGTGGTGGGTGGGGGAGGCGTGTCCGGTGGTAGTCCCAGCAACA
GCACCGGGGGGAGTGAGAAAAGCAGCGGCGGCGGCGGCAGCAGCAGCAAC
AATGCGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7780:484..2542+

>mRNA_Ecto-sp13_S_contig7780.19029.1 ID=mRNA_Ecto-sp13_S_contig7780.19029.1|Name=mRNA_Ecto-sp13_S_contig7780.19029.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1332bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7780:484..2542+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAAGGTGGACTCCCTTCTGGACGAACTCTACGTGCTCTTCTCTCCGCG
AGTCTTTCTGCTGGCGGACGTGAAGCCTCTCGTCGACGAGTCGTACCACC
AGCGTATAGACGAGCTTTGCGACAAAGCCCGCACCGGCGGCAGTGGCGGC
GGCGGCGGCGGCGGCGGGGACGGTTTGTCCTTCCCCCCTACCCTAGACGC
CTTGGCCTCGTCCCCGGGAAGTAGCAACGGCAACAACATCAACAGCCGCA
CGGCGGCGGGTATAGGTGGCGGGAGTGGCATCAAGGCCGAACCGCGGTCG
ACGAACCCAATCCGCGGTGGCTCCGGTGCCGGGAGTGAGGCCGAGGCATC
CGCGGCTGGCGGGGGGAGTTCTGAGGCCAGGAGCGGTACCTCGTCCCTGC
TCTCACCTCCCACGATGGTAGACGCGACCTCTGGTGGTGGCAGTAGCGGC
AAGGCTTCAGCGCCTGCACGAAGCAACGACGAGCTGGAGGGGATGCTATC
TCTTAGGCGAGGAAAAGAGAGCTCTCCCAGCACCCGCGTGCTATCGTCGG
ACGTCGCAAACACCACGGACATGGCGGACCTCCTGTCCGGCATCGAGCCC
GGTGTAGATGCTGCCCTCCTTGACTTCATGATGTGCGACAACGACAACAC
GCCGGTCCTCGGCGCCGCCGCGCCGCCTGCGGAGCCCCCAACTCTCAACA
TCCAACAGCAACAGCCCCAGCAGCAGCAGCAGCAGCCGTGGGCGTTTTCC
AGCCCGTTTCCTCCGACGATGGAGCCGGTGATTCCTAGGGGCAACAGGGC
GACATCTGGGACGTCCCCAACCAAGAAGAGGCGCGCATCAGAGGATTGTT
CCTCTAGCGTGCCCGCTGCCGCAGGCCGTATGTCAGCGGGCTCAACCGAT
GCCACTGGCAACAGCGACAACAACGACAGCGGCGACGACAGGACGACCTC
GCCCTCGATGATGTGGAGCCGAGTGGGGTCGGCCCCGAACCTTACCAACT
TGTCGTGCCGCATCCAAGCCACCCTTCCGAGTGCCCACAGCCGAGGGCAG
CAGCAGCAGCTGCAGCCGGCATCGTCTTCGGCTACGGCCACCACCTCGAC
GCCTCGCCCGCGGTGTAGCGTTGCCATCTCGAGCGGCGGCACGTCGAAGA
AGCAGTCGACGACCGGTAGGCCCCCGTCCGGCGCGTCAGCCAACCGTGGC
GGCGGCGGAAACCTCCAGATGCAGCAAGCCGTGGTGGGTGGGGGAGGCGT
GTCCGGTGGTAGTCCCAGCAACAGCACCGGGGGGAGTGAGAAAAGCAGCG
GCGGCGGCGGCAGCAGCAGCAACAATGCGATG
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