mRNA_Ecto-sp13_S_contig7780.19030.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7780.19030.1
Unique NamemRNA_Ecto-sp13_S_contig7780.19030.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7780.19030.1 vs. uniprot
Match: A0A6H5JCV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV8_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.330e-78
Identity = 146/161 (90.68%), Postives = 150/161 (93.17%), Query Frame = 3 
Query:   48 RTLPPHVNLDPDSIGAKGSGFAGMGSKRSMSIKEENSASGGGVGGNDSALRSRSVDDLEKLVVSVATKGMHQALHYGLRNTFFTLLRKKDQEIAELKEEALRWSANDTHLRQINRQLRNDNVQLRKAVGTAGGGSXXXXXXXX----DGWGPRGPSPSASS 518
            RTLPPHVNLDPDSIGAKGSGFAG+GS+RSMSIKEENSASGGGVGGN SA RSRSVDDLEKLVVSVAT+GMHQALHYGLRNTF TLLRKK+QEIAELKEEALRWSANDTHLRQINRQL NDNVQLRKAVG AGG  XXXXXXXX    DGWGPRGPSPSASS
Sbjct:  590 RTLPPHVNLDPDSIGAKGSGFAGIGSQRSMSIKEENSASGGGVGGNGSAARSRSVDDLEKLVVSVATRGMHQALHYGLRNTFVTLLRKKEQEIAELKEEALRWSANDTHLRQINRQLLNDNVQLRKAVGAAGGXXXXXXXXXXXXXXDGWGPRGPSPSASS 750
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7780.19030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCV8_9PHAE1.330e-7890.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7780contigEcto-sp13_S_contig7780:2910..4290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size671
Hectar predicted targeting categoryother localisation
Exons2
Cds size405
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464048.7698007-UTR-Ecto-sp13_S_contig7780:2909..30251681464048.7698007-UTR-Ecto-sp13_S_contig7780:2909..3025Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7780 2910..3025 +
1681464048.8047552-UTR-Ecto-sp13_S_contig7780:4140..42901681464048.8047552-UTR-Ecto-sp13_S_contig7780:4140..4290Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7780 4141..4290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464048.782089-CDS-Ecto-sp13_S_contig7780:3025..32231681464048.782089-CDS-Ecto-sp13_S_contig7780:3025..3223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7780 3026..3223 +
1681464048.7934844-CDS-Ecto-sp13_S_contig7780:3933..41401681464048.7934844-CDS-Ecto-sp13_S_contig7780:3933..4140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7780 3934..4140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7780.19030.1prot_Ecto-sp13_S_contig7780.19030.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7780 3026..4140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7780.19030.1

>prot_Ecto-sp13_S_contig7780.19030.1 ID=prot_Ecto-sp13_S_contig7780.19030.1|Name=mRNA_Ecto-sp13_S_contig7780.19030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MGSKRSMSIKEENSASGGGVGGNDSALRSRSVDDLEKLVVSVATKGMHQA
LHYGLRNTFFTLLRKKDQEIAELKEEALRWSANDTHLRQINRQLRNDNVQ
LRKAVGTAGGGSDGGGGGGGDGWGPRGPSPSASS*
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mRNA from alignment at Ecto-sp13_S_contig7780:2910..4290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7780.19030.1 ID=mRNA_Ecto-sp13_S_contig7780.19030.1|Name=mRNA_Ecto-sp13_S_contig7780.19030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7780:2910..4290+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGTGGAAACAGCGGTGGCGGCGGTGGCGGCGGCGGCGGCGGTAGAAGG
ACCTTGCCGCCACATGTCAACCTGGACCCTGACTCCATCGGCGCGAAAGG
CAGCGGATTCGCCGGCATGGGGAGTAAACGCTCTATGTCTATCAAGGAGG
AAAATTCGGCCAGCGGTGGTGGGGTTGGTGGCAACGACAGCGCGTTAAGG
TCGAGGTCGGTCGACGATCTGGAGAAGCTGGTGGTAAGCGTGGCTACCAA
GGGGATGCACCAAGCCCTGCATTACGGCCTGCGGAACACGTTCTTCACGC
TTCTTCGCAAGAAGGTGGGGGGTCGGGGGTCGAAAATGCGAGGTAGTGGC
GCGGTAGTGTCTCTTTGTTGCACGGTTCCACAACCGAAGGACGTTGGTTG
GGCTTCGGTGAGCACGGGGCTGCGCTCTGTGCTAGGTGGAGATAGCAGTG
ATTCGCGGTGGGTGGGCCGGGGGGGGGGAGAGAGGTGAAGAAGCCAGGAA
ATGGTCTTCGCGACCGTGTGTAGTACATGGTGGGAGTGTGACGGGTTGTA
GGGCGTGGTAACCGTCGCCTTTTTCTCACTTTTGGGGCCGGTCTTTTTTC
ACGCCCGCACCTATCCTTTCGAGAACAACACTTTCACCTCCACCACCGAC
CCCAGAATCGTTCTTCTTGTTTTTAGCCTCGTCGTCAGGCTCCTCGCGCG
TTCGCACACCGGAGGTGACATCATGCGACGCGTACAGCACCGCCATTGCG
CCGCCGCCGTTTGTCTCATCATGCTCAAACCCTCGGTCTGTTTGCGCCGT
TATTTTTACCCCCCCATACACCGACGCTCTTTGTCCCGGAATAGTGGAGC
TTTGAAAATCGATCCAGAGGGTGTGATGTCTATCTTATACGTCACCTACG
GTATGCGGAGCATGAAACTGCTCAAAACATGGTACGCCAATCTTGTGCGT
GTGTGTATGCTTTACGTATTAGTTGACTTTTCTATATTCTTTTGTCGTGG
GTTGATTTCAAACAAAAAAAACAGGACCAAGAGATCGCCGAGCTGAAAGA
GGAGGCGCTCCGGTGGTCGGCGAACGATACGCACCTGAGGCAGATCAACC
GCCAGCTCCGTAACGACAACGTGCAGCTGAGGAAGGCCGTGGGGACCGCC
GGGGGTGGTAGTGACGGAGGTGGAGGTGGCGGTGGCGACGGGTGGGGCCC
GCGCGGCCCGTCACCCAGCGCCTCCTCCTGATCCCCCCCTCGGCCTTTTT
TTGAGAGTTAAAAGAAACATAGAGGTGTTCAAGGAGGAGGATTTCCGGGT
CAGGTGGTATGGTGGTGATGTTGTTTGCTACTTGTTTCAGCGATCGGTGG
GTCAAGTTTAATGTCCTGCGCCACACGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7780:2910..4290+

>mRNA_Ecto-sp13_S_contig7780.19030.1 ID=mRNA_Ecto-sp13_S_contig7780.19030.1|Name=mRNA_Ecto-sp13_S_contig7780.19030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7780:2910..4290+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAGTAAACGCTCTATGTCTATCAAGGAGGAAAATTCGGCCAGCGG
TGGTGGGGTTGGTGGCAACGACAGCGCGTTAAGGTCGAGGTCGGTCGACG
ATCTGGAGAAGCTGGTGGTAAGCGTGGCTACCAAGGGGATGCACCAAGCC
CTGCATTACGGCCTGCGGAACACGTTCTTCACGCTTCTTCGCAAGAAGGA
CCAAGAGATCGCCGAGCTGAAAGAGGAGGCGCTCCGGTGGTCGGCGAACG
ATACGCACCTGAGGCAGATCAACCGCCAGCTCCGTAACGACAACGTGCAG
CTGAGGAAGGCCGTGGGGACCGCCGGGGGTGGTAGTGACGGAGGTGGAGG
TGGCGGTGGCGACGGGTGGGGCCCGCGCGGCCCGTCACCCAGCGCCTCCT
CCTGA
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