mRNA_Ecto-sp13_S_contig778.19026.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig778.19026.1
Unique NamemRNA_Ecto-sp13_S_contig778.19026.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig778.19026.1 vs. uniprot
Match: D7FI55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI55_ECTSI)

HSP 1 Score: 512 bits (1318), Expect = 6.680e-178
Identity = 272/299 (90.97%), Postives = 280/299 (93.65%), Query Frame = 1 
Query:    1 DLTSVQAVEAIVSAKQKERLKELERKKAEIAAEHDRELQQAAAERMALHEDNQQRKKHKLNELRDARPADEVEEENAWIALKEARAVIKSDYTESEVNDLRKSREVLWDSYDRAIRSSKTRARLKAARQLELASKDDANSKADAWIQTKQASLRSRQGRVKYEFLCRQSYGNLLHKAYVKKGPPMQAFAALHAPDDAPVTLATRIAYDHPRPAMLKEAKTLARANLVAEAGARGTAWDLLWDVEEENEYYLHVEKDGSRKKYPKDTAVCHNCDAMIAPEDQMCARCHTSRSAKNEGLYV 897
            DLTSVQA+EAIVSAKQKERLKELERKKAEIAAEHDRELQQAA ER+ALHEDNQQRKKHKLNELRDARPADEVEEENAWIALKEARAVIKSDYTES+V+DLRK+REVLWDSYDRAIRSSKTRARLKA R+LELASKDDANSKADAWIQTKQ       GRVK+EFLCRQSYGNLLHKAYVKKGPPMQAFAALHAPDDAPVTLATRIAYDHPRPAMLKEAKTL    LVAEAGARGTAWDLLWDVEEENEYYLHVE DGS KKYPKDTAVCHNCDAMIAPEDQMCA+CHTSRSAK   L V
Sbjct:  230 DLTSVQAIEAIVSAKQKERLKELERKKAEIAAEHDRELQQAAEERIALHEDNQQRKKHKLNELRDARPADEVEEENAWIALKEARAVIKSDYTESDVDDLRKAREVLWDSYDRAIRSSKTRARLKAERELELASKDDANSKADAWIQTKQ-------GRVKHEFLCRQSYGNLLHKAYVKKGPPMQAFAALHAPDDAPVTLATRIAYDHPRPAMLKEAKTL----LVAEAGARGTAWDLLWDVEEENEYYLHVENDGSTKKYPKDTAVCHNCDAMIAPEDQMCAQCHTSRSAKTRALRV 517
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig778.19026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI55_ECTSI6.680e-17890.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig778contigEcto-sp13_S_contig778:1..4414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score443.7
Seed ortholog evalue5.8e-122
Seed eggNOG ortholog2880.D7FI55
Model size949
KEGG koko:K06268
KEGG Pathwayko04010,ko04020,ko04022,ko04114,ko04218,ko04310,ko04360,ko04370,ko04380,ko04650,ko04658,ko04659,ko04660,ko04662,ko04720,ko04724,ko04921,ko04922,ko04924,ko05010,ko05014,ko05031,ko05152,ko05166,ko05167,map04010,map04020,map04022,map04114,map04218,map04310,map04360,map04370,map04380,map04650,map04658,map04659,map04660,map04662,map04720,map04724,map04921,map04922,map04924,map05010,map05014,map05031,map05152,map05166,map05167
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0034@2759
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-10_003610.3
Cds size777
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig778.19026.1prot_Ecto-sp13_S_contig778.19026.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig778 136..4377 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464048.4194064-UTR-Ecto-sp13_S_contig778:0..1351681464048.4194064-UTR-Ecto-sp13_S_contig778:0..135Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig778 1..135 +
1681464048.5255806-UTR-Ecto-sp13_S_contig778:4377..44141681464048.5255806-UTR-Ecto-sp13_S_contig778:4377..4414Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig778 4378..4414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464048.4395208-CDS-Ecto-sp13_S_contig778:135..1681681464048.4395208-CDS-Ecto-sp13_S_contig778:135..168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig778 136..168 +
1681464048.449193-CDS-Ecto-sp13_S_contig778:491..5811681464048.449193-CDS-Ecto-sp13_S_contig778:491..581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig778 492..581 +
1681464048.457935-CDS-Ecto-sp13_S_contig778:1062..11151681464048.457935-CDS-Ecto-sp13_S_contig778:1062..1115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig778 1063..1115 +
1681464048.466932-CDS-Ecto-sp13_S_contig778:1609..17661681464048.466932-CDS-Ecto-sp13_S_contig778:1609..1766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig778 1610..1766 +
1681464048.4758239-CDS-Ecto-sp13_S_contig778:1927..20701681464048.4758239-CDS-Ecto-sp13_S_contig778:1927..2070Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig778 1928..2070 +
1681464048.4845474-CDS-Ecto-sp13_S_contig778:2593..26571681464048.4845474-CDS-Ecto-sp13_S_contig778:2593..2657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig778 2594..2657 +
1681464048.4932609-CDS-Ecto-sp13_S_contig778:3227..33441681464048.4932609-CDS-Ecto-sp13_S_contig778:3227..3344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig778 3228..3344 +
1681464048.504829-CDS-Ecto-sp13_S_contig778:3885..39721681464048.504829-CDS-Ecto-sp13_S_contig778:3885..3972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig778 3886..3972 +
1681464048.5150173-CDS-Ecto-sp13_S_contig778:4344..43771681464048.5150173-CDS-Ecto-sp13_S_contig778:4344..4377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig778 4345..4377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig778.19026.1

>prot_Ecto-sp13_S_contig778.19026.1 ID=prot_Ecto-sp13_S_contig778.19026.1|Name=mRNA_Ecto-sp13_S_contig778.19026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MALHEDNQQRKKHKLNELRDARPADEVEEENAWIALKEARAVIKSDYTES
EVNDLRKSREVLWDSYDRAIRSSKTRARLKAARQLELASKDDANSKADAW
IQTKQASLRSRQGRVKYEFLCRQSYGNLLHKAYVKKGPPMQAFAALHAPD
DAPVTLATRIAYDHPRPAMLKEAKTLARANLVAEAGARGTAWDLLWDVEE
ENEYYLHVEKDGSRKKYPKDTAVCHNCDAMIAPEDQMCARCHTSRSAKNE
GLYVGFKV*
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mRNA from alignment at Ecto-sp13_S_contig778:1..4414+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig778.19026.1 ID=mRNA_Ecto-sp13_S_contig778.19026.1|Name=mRNA_Ecto-sp13_S_contig778.19026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4414bp|location=Sequence derived from alignment at Ecto-sp13_S_contig778:1..4414+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATCTGACGAGCGTCCAGGCGGTCGAAGCGATCGTGTCGGCCAAGCAGAA
GGAGCGGTTGAAGGAACTGGAGAGGAAGAAGGCCGAGATCGCGGCAGAGC
ATGACAGGGAGCTACAGCAGGCGGCGGCGGAGCGCATGGCGCTGCACGAG
GACAATCAGCAGCGAAAGGTACGACGAGAGTGCGAAAGAAGAACGGCAAC
AGTGACGACAGTGTTGAGATTCAACACCACCACCACCATCACCACCACTA
CCACTACCACCACCAATAACAACAACAGAAACCACTACAACAGCTACAAC
AGCTACAACAACCAAAAACGAAGGCACCCATGAGAGTACGTGAGATGTAT
ACCTTGTGCTACAAGAACAGCTTCTCCTGTCTAACTTGCGTTCAAGCCCG
GTCGCGTGTTGTTCTTCGTTGGTTGTTTCGAGATACCTTCGTGAGTGCTA
TCCACTACGGTACCCTACGCTTGCTGTGCCGTGCCTCACAGAAGCACAAG
CTCAACGAGCTGCGGGACGCTAGGCCGGCAGACGAAGTCGAGGAAGAGAA
CGCTTGGATCGCTCTCAAAGAAGCGCGGGCGGTAAGTGCGCGCAGGGAAA
ATGGATGGCAACGGGGAGGGGCGGGGGGATTGCCTGCACCATGTTCGAAG
GGAACAAGAGCCATGAGAAAGCATGTTATTGGCTGGGGGGGGGACGAGGG
GAGGGTATTATTTTGCCGCTTGCGTTGTTGAGAACGAGGTAGCACTGTTC
CCGGCACTGGTCCCATTCCCACCTGAGAGGGCCAGTCTTGTACCGTGTTC
GGCACGTGCTTTTTCAGTTAATTCACGTGCCATTGCCCTCCTACAAACAG
CGGTGCTGTCAGCAGCGCTCAACGGCGACGACGGGTTCCGTTCAGCACCG
TGTCACACACACCAGGACACACGTAAAACGAACGAGCGTGTTCAGGCCTA
TCGTAAGTAATTTTTTGTGGTGTGTACCTTGCCTTCGTCTCTGCATATGG
TTCTGTACAGAAGGACGACGGAAACTTTCCTTCCCGCTGCGATTTTTTTG
GCTTCGTCTCAGGTGATCAAGTCAGACTACACGGAGAGCGAAGTGAACGA
TTTGCGAAAATCCAGGTGCGTGCAAAGAGGCGTGAGAGAAGCCAGTCAGA
AGGTAACGAGCGTTTTATATAAAAAACTAGGGTAGAGAAAAGAGAAGTAG
ACAGCAGTCAGAAAACAGAGATGGCGGAGGGATTGATGTATTCTTCGGTA
TTGAGGTTGCGGTACACGAGCGGCATGGGAAACAAAGATATCCTCATTGT
GTTTTCTCGACGGGCGATACATACGTGCAAGGGAAGCACTGCATTTTTCA
CGACATGGCCATCCCAGGTGGGCGAACGTTTTCCCACGGAGCAAGGCAAC
TCGGGAGTCCGAAGGAAACGAGCGAAGAGCTGCGACGACGCAGTGCTTCC
GAAACGTTTTATTAGGTTCTCGCCCCGCCGGAATCAACACAGTCAACCCG
TCCACACCGCTCAATAACTCTCGTTACTTGTTGCGAACACGACAAACGAC
AAAATAATACCAATCAAACAGCAAATCCTGCACCACAACAACGACTGCGA
CAATGGCAGAGAGGTACTTTGGGATAGCTACGACCGCGCGATCCGGTCGA
GCAAAACAAGGGCAAGGCTGAAGGCAGCGAGGCAGCTGGAGCTGGCTTCC
AAGGACGATGCCAACAGCAAGGCCGACGCGTGGATCCAAACTAAGCAGGC
GAGTCTTCGAAGCCGCGTACCCCCTTACCCCCCACCACCCAACCATCGTC
CTCGACCAAATCCGAGTAGCCTGCCCGCCGAAAAAAGCAAGACAAAACCC
GTACGCCGCTGCGGTCACCGCACTATGTACCGCAACACACACACACACAC
GACACACGCGACGTGCGTCTTCATGAGCAGGGGAGAGTCAAGTACGAGTT
CCTGTGCCGTCAGAGCTACGGCAACCTCCTCCACAAGGCGTACGTCAAGA
AGGGGCCCCCAATGCAGGCGTTCGCCGCTCTTCACGCTCCCGACGATGCC
CCGGTCACTCTTGCAACGAGGTGAGCTCGAGGGGATCTGTCTTTGCGGGG
TGGTGGTTGCGGGTGAGGGCGGGGACGATCGGAGATCTATTTTTTTTGTT
CAACTCCTTCTCTGCCCCCCCCTTTCACTCGCGGAGTCTGTCAGCCTTCA
AGCAATTGACCAAAAAACACACACACAAGAGTCGTCTTCGCGTCAGTTCC
ATCTTCCATCATCCCATCACACCCCGCCGTGTCCTATCCCACCTGCGCCT
ACAGTACATGGTAGAGGCTAACAAACAATAACCTCACTTTTCAGCGAGCG
CACTCACGTGCAAGCGGGGAAACTCGGGGGTCTCTTTGACGAAGATGTTA
ACTCAGGCCCATTACCGCGCGCAACAGGGAGCCCCGCGTCACTTCTCTCC
TTCGCGGCCGCAACGACAAAAAGTCTTTACAGCCCGACCTCCATGTCGCG
TGACCAAGGGTCGCGACCCCCAAGGCCGATACACCAAATTTCATCATCCC
ACAACGCACACAACCGCATCTCACTCCCACACCACACCATCAGGATCGCC
TACGACCACCCGAGGCCGGCGATGCTTAAGGAGGCCAAGACCCTGGCGAG
GGCGAATGTGGTTTCCCGCTTCGCCAAGCAGGAGGCCGCGGAGGCGAAGG
CGCGCGCGGACCAAGAAGCCGCGCAGCAGGAGGTGGACTTTATGGTTCTC
CAGCAGGAGGTAAATATAGCTCAAAACCGAGCACGTAGTCAACATTTACT
TTTGCCTGTTGTTCCTCCAGCACAGCAGGGAAAGCGTACTGGGAACAATA
AAGGATGGTGTGAACGTAGGTCCCGGGACCCACAAAGCACTCATTATTAT
GCGGTTCGGGTGAGGGTACGTGAATATGAGCAAAACATATTTGTGAGATG
CTTGCCCCCCCCACCCCCTTCCCCCTATTCCCCTCCATTTCTCCAGCCGT
AGCTTAGTCCTCGGAGCGTAGCGTTACCACCACGCTCTCTTACGCTTCCG
GCGCCACATCAGACATATCGTAGCGCTTCCTCCGTAGAATAGCCTTGATT
GAAATGGTGGCTGTCGTGATTTGTTCTCGCTCGAGTCGACGCTCGTGAGT
GTTTGACTTGGCCTCTTCTTGTCGCTCTTGTTTCATTTCGAACATGGCAT
GCTTAAACGACTAACACGCAACGATAGCTTGTGGCGGAGGCCGGGGCTCG
CGGCACCGCCTGGGATCTGTTGTGGGACGTCGAGGAGGAGAACGAGTATT
ACCTTCACGTGGAAAAGGACGGATCGAGGAAGAAGTACCCTAAGGTCAGC
ACGGTGGTTTTTGCTCAACTGTATCTCTGGGGGTAGAACGATCTCATCCA
CGACACACAGACCAACAATAACAGGCGTGTCTGGTGCCCCTGGGTAATTT
GAATTTTATCGCGCGGAAGAGAGCGATTAGATCCGGGTCGCGTCATCGTT
GAGGACCCAAGCTGAGGAGTCTCGTCTCAGCTTCAAGTCGTGGCTTAGTC
TCTTCGTCTGCTTCCATTGCGCGGGAAGGGAGGGTAGGCGTGTGACACAT
CGTTTTGCACCCGGCTGTTTTGTTGCTATCCTCAGGCGTCGCCGAAGGGG
AAGAGCGGATAATTTCACCTTTCTGCCGCGCCTCTTGACGCGCATAGTTC
CACAATGCAATAGTGAAGCCATGCGCTGAGCGGTGGCAATGGCTGTGTGT
CCCTCACCTGGGAAGTGTTGGGTCACCGAAGTCGCCTGGATGTTGTCTTC
GTGACTGTCGGACAAACCACCTCAACGACGACAACAATGACGACAGCAAA
AGCGACCACGCCCATCAACAACTTGTTGAACTCAGGATACTGCGGTGTGT
CACAACTGCGACGCGATGATTGCCCCGGAGGACCAAATGTGCGCGCGGTG
CCACACAAGTCGGAGCGCAAAGGTAAATTGACGAAGAAAACAACGGGGGA
GGGGGGAGGAGACAGGACAAGGCCGAGCTATTGGAGGCACAAAAACAAGA
AGATTTGATCGTCTGTCACGCATGATCTTGCACTACTACCGTCGAACTGC
TGTGCATCGTTTGGCTACCGGCCCTCAGATAGATTAAATGAGGCAGGTCA
CGCCTGGTTTGCCGCTGTTGTTGCAGGAGGAGCACCGGCACCATGTAGCA
ACTTCAAGCCGTCACACAAACGACGACCAACCACCGTCGTCGCCATCAAT
AATATGATTTCCTCTCCCTCTCTCTCCATTCAAACGTGCTTCCCACTATT
ATTGCCATCTTGGACGAAAACGACCACCCACGCTATAATAAAAGAACGAG
GGGCTGTACGTGGGGTTCAAGGTGTGACCAACCAGAACGACGAACGGCAC
GAAGGAGTCGAACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig778:1..4414+

>mRNA_Ecto-sp13_S_contig778.19026.1 ID=mRNA_Ecto-sp13_S_contig778.19026.1|Name=mRNA_Ecto-sp13_S_contig778.19026.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig778:1..4414+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCTGCACGAGGACAATCAGCAGCGAAAGAAGCACAAGCTCAACGA
GCTGCGGGACGCTAGGCCGGCAGACGAAGTCGAGGAAGAGAACGCTTGGA
TCGCTCTCAAAGAAGCGCGGGCGGTGATCAAGTCAGACTACACGGAGAGC
GAAGTGAACGATTTGCGAAAATCCAGAGAGGTACTTTGGGATAGCTACGA
CCGCGCGATCCGGTCGAGCAAAACAAGGGCAAGGCTGAAGGCAGCGAGGC
AGCTGGAGCTGGCTTCCAAGGACGATGCCAACAGCAAGGCCGACGCGTGG
ATCCAAACTAAGCAGGCGAGTCTTCGAAGCCGCCAGGGGAGAGTCAAGTA
CGAGTTCCTGTGCCGTCAGAGCTACGGCAACCTCCTCCACAAGGCGTACG
TCAAGAAGGGGCCCCCAATGCAGGCGTTCGCCGCTCTTCACGCTCCCGAC
GATGCCCCGGTCACTCTTGCAACGAGGATCGCCTACGACCACCCGAGGCC
GGCGATGCTTAAGGAGGCCAAGACCCTGGCGAGGGCGAATCTTGTGGCGG
AGGCCGGGGCTCGCGGCACCGCCTGGGATCTGTTGTGGGACGTCGAGGAG
GAGAACGAGTATTACCTTCACGTGGAAAAGGACGGATCGAGGAAGAAGTA
CCCTAAGGATACTGCGGTGTGTCACAACTGCGACGCGATGATTGCCCCGG
AGGACCAAATGTGCGCGCGGTGCCACACAAGTCGGAGCGCAAAGAACGAG
GGGCTGTACGTGGGGTTCAAGGTGTGA
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