mRNA_Ecto-sp13_S_contig77791.19025.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77791.19025.1
Unique NamemRNA_Ecto-sp13_S_contig77791.19025.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77791.19025.1 vs. uniprot
Match: D7G610_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G610_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 3.380e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 VYGLPLDRTGAYTVYRQWKNTPAQRAEMLMYNLTTAFELC 120
            VYGL LDR+G+Y+VYR W+NTP QRAEML YN+TT F+ C
Sbjct:  365 VYGLQLDRSGSYSVYRHWENTPEQRAEMLGYNVTTTFQRC 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77791.19025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G610_ECTSI3.380e-1170.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77791contigEcto-sp13_S_contig77791:371..633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size265
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size126
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464048.3751833-CDS-Ecto-sp13_S_contig77791:370..4961681464048.3751833-CDS-Ecto-sp13_S_contig77791:370..496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77791 371..496 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464048.390949-UTR-Ecto-sp13_S_contig77791:496..6331681464048.390949-UTR-Ecto-sp13_S_contig77791:496..633Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77791 497..633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77791.19025.1prot_Ecto-sp13_S_contig77791.19025.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77791 371..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77791.19025.1

>prot_Ecto-sp13_S_contig77791.19025.1 ID=prot_Ecto-sp13_S_contig77791.19025.1|Name=mRNA_Ecto-sp13_S_contig77791.19025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
VYGLPLDRTGAYTVYRQWKNTPAQRAEMLMYNLTTAFELCT*
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mRNA from alignment at Ecto-sp13_S_contig77791:371..633+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77791.19025.1 ID=mRNA_Ecto-sp13_S_contig77791.19025.1|Name=mRNA_Ecto-sp13_S_contig77791.19025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77791:371..633+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTACGGGCTGCCGCTTGACAGGACTGGCGCGTACACCGTCTACCGACA
ATGGAAAAATACTCCCGCCCAGCGGGCCGAGATGCTGATGTATAATCTCA
CAACTGCATTCGAGCTGTGCACATAGATACCATACGCAGCAGCATTGAGA
TCGTGGCTTGTGTGCGTTTCGCTTGGATGTTTTTTTGAAGCAGTGTGTCG
TCGTGTTCGGGGAGGAGGTCGCTACGAATTGACGATCATTCTTACGTATT
GAAGATTACTGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77791:371..633+

>mRNA_Ecto-sp13_S_contig77791.19025.1 ID=mRNA_Ecto-sp13_S_contig77791.19025.1|Name=mRNA_Ecto-sp13_S_contig77791.19025.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77791:371..633+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTACGGGCTGCCGCTTGACAGGACTGGCGCGTACACCGTCTACCGACA
ATGGAAAAATACTCCCGCCCAGCGGGCCGAGATGCTGATGTATAATCTCA
CAACTGCATTCGAGCTGTGCACATAG
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