prot_Ecto-sp13_S_contig7778.19023.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7778.19023.1
Unique Nameprot_Ecto-sp13_S_contig7778.19023.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length220
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7778.19023.1 vs. uniprot
Match: D8LE06_ECTSI (Sel1 domain protein repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE06_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.250e-14
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0 
Query:  176 EGAPPLSDEAAAARDELRASLLEAQRVNTELVAGYDYGLIAGQS 219
            EGA PLSDEAAAARDELRASLLEAQRVN ELVAGYDYGLIA QS
Sbjct:  134 EGASPLSDEAAAARDELRASLLEAQRVNKELVAGYDYGLIAEQS 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7778.19023.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE06_ECTSI5.250e-1493.18Sel1 domain protein repeat-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 34..70
e-value: 2.4E-5
score: 33.7
coord: 1..33
e-value: 0.087
score: 21.9
coord: 71..106
e-value: 9.6E-9
score: 45.0
coord: 107..142
e-value: 0.0018
score: 27.5
coord: 143..178
e-value: 8.3E-8
score: 41.9
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 72..105
e-value: 2.1E-7
score: 31.4
coord: 1..33
e-value: 8.9E-5
score: 23.0
coord: 144..177
e-value: 1.5E-7
score: 31.9
coord: 35..70
e-value: 2.1E-9
score: 37.8
coord: 107..141
e-value: 0.17
score: 12.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 107..209
e-value: 2.0E-19
score: 72.4
coord: 1..106
e-value: 1.4E-33
score: 118.9
NoneNo IPR availablePANTHERPTHR43628FAMILY NOT NAMEDcoord: 112..186
coord: 3..108
coord: 52..126
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 2..177

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7778contigEcto-sp13_S_contig7778:1585..6053 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7778.19023.1mRNA_Ecto-sp13_S_contig7778.19023.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7778 1454..7281 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7778.19023.1 ID=prot_Ecto-sp13_S_contig7778.19023.1|Name=mRNA_Ecto-sp13_S_contig7778.19023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
MAALGVMLLHGRGGSRDFGAAAAWFRLAAMEGHVEAMWLLGRMHCEGKGV
DKVDFDEANKWFHRAAAKGNARGQHHLGIAHEYGSGVTKDLREAARWYSL
AATQGLAESNYHLGLMKAHGRGFAQDLSGAAIHFQKGAQQRHAPSMMYLG
KMFLYGQGFPVDYDMALLWFEKAAEEGAPPLSDEAAAARDELRASLLEAQ
RVNTELVAGYDYGLIAGQS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf