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Homology
BLAST of mRNA_Ecto-sp13_S_contig7778.19023.1 vs. uniprot
Match: D8LE06_ECTSI (Sel1 domain protein repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE06_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 3.790e-13 Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 1
Query: 916 EGAPPLSDEAAAARDELRASLLEAQRVNTELVAGYDYGLIAGQS 1047
EGA PLSDEAAAARDELRASLLEAQRVN ELVAGYDYGLIA QS
Sbjct: 134 EGASPLSDEAAAARDELRASLLEAQRVNKELVAGYDYGLIAEQS 177
BLAST of mRNA_Ecto-sp13_S_contig7778.19023.1 vs. uniprot
Match: A0A6U4KSW9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KSW9_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 8.440e-7 Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 1
Query: 133 FSVASTSASSLADGLDYDLGKGLGLTRGHEVPTSVVQSVIQAADQGNRDSLYFLGLLKLYGISVAPDADKALEYIRKA 366
F++ + A GLD LG+ +GL G ++ + V +VIQ A +G+ +SLYFLGL +LYG+ +A D +AL+ R+A
Sbjct: 20 FALRGSLAQPSGAGLDVTLGEEVGLEPGDDIDPATVNAVIQGAGRGSPESLYFLGLFRLYGMGMAKDELRALQSFRRA 97
BLAST of mRNA_Ecto-sp13_S_contig7778.19023.1 vs. uniprot
Match: A0A482SI98_9ARCH (Sel1 repeat family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI98_9ARCH) HSP 1 Score: 55.8 bits (133), Expect = 7.070e-5 Identity = 24/64 (37.50%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 175 LDYDLGKGLGLTRGHEVPTSVVQSVIQAADQGNRDSLYFLGLLKLYGISVAPDADKALEYIRKA 366
L+ LGK G+T+ + ++Q ++ + GN+D++YF GLLKLYGIS+ D+ A + +A
Sbjct: 29 LEIQLGKEKGITQDASISADILQRILAGVEAGNKDNIYFYGLLKLYGISMVKDSKSAAQQFLRA 92
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 79.3 |
| Seed ortholog evalue | 2.4e-12 |
| Seed eggNOG ortholog | 2880.D8LE06 |
| Model size | 1181 |
| Hectar predicted targeting category | other localisation |
| Exons | 10 |
| EggNOG free text desc. | ERAD pathway |
| EggNOG OGs | COG0790@1,KOG1550@2759 |
| Cds size | 660 |
| COG Functional cat. | T |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464048.0274756-UTR-Ecto-sp13_S_contig7778:1453..1584 | 1681464048.0274756-UTR-Ecto-sp13_S_contig7778:1453..1584 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig7778 1454..1584 - |
| 1681464048.152806-UTR-Ecto-sp13_S_contig7778:6053..6166 | 1681464048.152806-UTR-Ecto-sp13_S_contig7778:6053..6166 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig7778 6054..6166 - |
| 1681464048.1690593-UTR-Ecto-sp13_S_contig7778:6695..6885 | 1681464048.1690593-UTR-Ecto-sp13_S_contig7778:6695..6885 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig7778 6696..6885 - |
| 1681464048.183343-UTR-Ecto-sp13_S_contig7778:7194..7281 | 1681464048.183343-UTR-Ecto-sp13_S_contig7778:7194..7281 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig7778 7195..7281 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464048.0479717-CDS-Ecto-sp13_S_contig7778:1584..1666 | 1681464048.0479717-CDS-Ecto-sp13_S_contig7778:1584..1666 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7778 1585..1666 - |
| 1681464048.0628526-CDS-Ecto-sp13_S_contig7778:2208..2258 | 1681464048.0628526-CDS-Ecto-sp13_S_contig7778:2208..2258 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7778 2209..2258 - |
| 1681464048.0745575-CDS-Ecto-sp13_S_contig7778:2732..2852 | 1681464048.0745575-CDS-Ecto-sp13_S_contig7778:2732..2852 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7778 2733..2852 - |
| 1681464048.0848703-CDS-Ecto-sp13_S_contig7778:3376..3552 | 1681464048.0848703-CDS-Ecto-sp13_S_contig7778:3376..3552 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7778 3377..3552 - |
| 1681464048.0945559-CDS-Ecto-sp13_S_contig7778:4148..4200 | 1681464048.0945559-CDS-Ecto-sp13_S_contig7778:4148..4200 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7778 4149..4200 - |
| 1681464048.1086233-CDS-Ecto-sp13_S_contig7778:4836..4891 | 1681464048.1086233-CDS-Ecto-sp13_S_contig7778:4836..4891 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7778 4837..4891 - |
| 1681464048.1229303-CDS-Ecto-sp13_S_contig7778:5592..5680 | 1681464048.1229303-CDS-Ecto-sp13_S_contig7778:5592..5680 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7778 5593..5680 - |
| 1681464048.137011-CDS-Ecto-sp13_S_contig7778:6016..6053 | 1681464048.137011-CDS-Ecto-sp13_S_contig7778:6016..6053 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig7778 6017..6053 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7778.19023.1 >prot_Ecto-sp13_S_contig7778.19023.1 ID=prot_Ecto-sp13_S_contig7778.19023.1|Name=mRNA_Ecto-sp13_S_contig7778.19023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
MAALGVMLLHGRGGSRDFGAAAAWFRLAAMEGHVEAMWLLGRMHCEGKGV DKVDFDEANKWFHRAAAKGNARGQHHLGIAHEYGSGVTKDLREAARWYSL AATQGLAESNYHLGLMKAHGRGFAQDLSGAAIHFQKGAQQRHAPSMMYLG KMFLYGQGFPVDYDMALLWFEKAAEEGAPPLSDEAAAARDELRASLLEAQ RVNTELVAGYDYGLIAGQS* back to topmRNA from alignment at Ecto-sp13_S_contig7778:1454..7281- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig7778.19023.1 ID=mRNA_Ecto-sp13_S_contig7778.19023.1|Name=mRNA_Ecto-sp13_S_contig7778.19023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7778:1454..7281- (Ectocarpus species13 EcNAP12_S_4_19m) GCGCTCGTGTCAACAGTGCTGATTCTCAGCTTCCTCGGGACACTCGTCTG
CGAGGCCGCCAGCAAGGAACCTGGGGATCAAACAACGGTATGTTATATTG
GATCCTCTTCTGGTCGTGGAAGTCGACATGTAGACAGCAAGAGACCGTGG
TTTTCACGTACTGCAGATCCACAGGGTTTATCGCTGGCCGACCTGGTGTA
AGAGCACGAACGTTTTCGAGTGCACCGCAGCACGCCCGTTGTCGATGATT
TGATGCAAATGACGGCACAGAGGGTTACCGCAGTATTGAGATTCGGGAGT
GCCCATTGTACATGTAGCCGCGTCACTGGTGGGCCACATGCAGCGATCTG
CCCCCCGCTGTTGTCCCCTATAACTTGTTTTGCCTGTCGAGAACAGAGCG
CCGAATTGGGTCGACCCCCACTACCCTCCTCGTCGTCGTCATTTTCCGTG
GCATCGACCTCAGCAAGCTCGCTTGCCGATGGCCTTGACTATGACCTTGG
GAAAGGTCTGGGGCTCACTCGCGGGCACGAGGTGCCGACATCTGTGGTGC
AGTCGGTGATACAGGCAGCAGATCAAGGAAACCGAGGTACCATTTTAGTT
ATGTATGGGACAGATAATGTACCTTTTGCTCCGTAGCGTGAATTCAGGCT
AAGCCATGGACGCAGCCCCAAGGTCTACTGCTTAGCAGTATTGAGCTATG
CAATGTACCAGAGCAAGTATACCATATATGACACAAGATAACACACCCCC
TGGACAGATTTTCAAAGCCCGATTACTCCACGACGAAGAGAACTCATAGA
CGAAAGAATACATTTTCAGAAAGCTCTCGACGAGACGGTTCCAACGCCAA
CGTTTTCGGCGCTGTGACTCTTCCTGCTGTTGAGAAATCGAGCTTTGAAA
ATCGGTCAAGGGGGTGTGCTATCTTGTCTCATATACGGTAATGAGCCAGT
CGCCAGCGACGACCACGGCTGACGGTCTACCCTCACGCAGTGTGAGTTTG
AGTCAACGCGAGGAACAAGTGACTTTGGGCGTTTCTTCTATTTCTCACGC
CCCCACTGCCCCATCTACATGCCCGTACGGGTCTGCTCGTCGTGTCTACC
CGCCTGGCCGGGTAGATTCCTTGTACTTTTTAGGTCTGCTCAAGCTCTAC
GGAATTTCGGTGGCCCCAGACGCCGACAAAGCTCTCGAGTACATCAGAAA
GGCCGCCGAACTTAGGCATCATGAGGCCATGGCGGCACTGGGAGTCATGC
TTTTGCACGGGAGAGGTGATGCTACATGGAACTGTTCGAGAAGCACATGT
GTATCAAGAAGAGAAGCTGCTTCTCGTCCGCTGGAATCGCGCAACTTCCA
ACCCAGGCACCCGCTGCAGTAGCTCCTACGATATTGTCGAGAGACTTCGG
GAAGCCGGGTTCTAGACAACATGAATCATAATTCTTTAGGCTCTCAAGTT
CTGGGCTATGTAGTCTATTGTCCAGAACCTTGTGTGACCCCATTTGGATC
TCGTGACAAGGTCAGACCCGCGTACATACTGTGACACGTTGGGGATGGTT
GTCTCATGCATTGATCTTAATCAAGGTCTTCTTTCACCTGGTTATTCCAA
GGTGGTAGCCGGGATTTTGGCGCTGCGGCCGCTTGGTTCAGGCTTGCGGC
GATGGAAGGTCACGTAGAAGCCATGTGGCTGCTTGGGAGGTGGGTTTGAC
TTTCGTTGTTTCCTCACGTCGATCAACGAATTGCAAGGTAGGTGCGACAA
CCGCACACAGTGAAAGACGGCAAATGATACAGAAAAAAGAACCAAGTGCC
ACGTATTGCGATTTTCTACATGGGGATGCCGAAAGACAAACAATACGACC
ATTTAGTGGTCTTCACGTTCATGCGGGTCAGCACAGATGCCTCAGGGGAA
GGGTTCACCAAGTGCGCTTCTGGAACAACCTTTGTAGTGCATAGGCGCAT
GCTTCGACTCGCCAAAAGTCCAAGTCGAAGCGCTGCAGTCGCCGGTTACA
TATCTTCAGATGACAACGCTAACGACTACCAAGGTAGTGTTGCTTTGGTA
TAGCCCGACGTCCACACAACGTAGGGAGGAACTTGTAACAGCGCACACAA
CCGTGGTGGCCGAAGCTTGCTTCCACAGCTAGCTGTAGACAGCGTAACCA
AAAGGAAAGAAATTGGAAGGACGCATAACCACTTCAGGTAAGCTTACGTC
AACCCACCGTTAGGACAAACTTTCGCAAGCGATGTATTCATCCACCATGA
TCACGCAAGGGTAGAACCAGGGGTGGACCGTCGTTCAACAAGAGATTCTT
GGCATTTCATTCGCCAAACGTGTCCTGGATTTGCGTGCTACCAAGAGCGG
ACGCGACACACACGTAGTGTTGGCGCTGTACTTCCCGCAGGATGCACTGC
GAGGGCAAGGGAGTCGACAAAGTCGATTTCGACGAGGCGAACAAGGTGCG
CCCACGTAAATCTCTGAGTACTGTAGAATTCAAGATGTGGGTGCGCCTTC
GCCAGGGGCCCAGCACGTCAATCTGGCCTTGAAAAAGTGAACAACTAAAG
GAATAGCTGGTCGTTTCCCTTTACATGCGGTTTCTCTCTCTCCCTGCAGC
AAGCTCTTCGTCCTGACCTCTGTTTTTGGATTCGCATGAGGTTGGACAAC
TTCAGTGGTGCTGGGAAAAGGCATATCCGTATTCGTACGCCGACTGCAGC
TTACATCGAGCGAGTCTGCGGAGCCTGCTCTGACGCGGAGGAGCGTCCTT
TTGCGTTGAAAACTATTTTGGTGTCCTTTGTCCACACGGCCTACATCACG
ACAAATACGTCGGAGGGAGCGGAGTCAAATTGGCGGGTGTACGGTTGAAA
TGTCCAGTTTGCTCTGGGGTAACCACGCGTTCCACTCCCAACAGAGCACG
TCGCTCACGACGATCCCGGGATCGCACTAAAGCTCCCATCCCCTATCTTA
TCCTGCGGTCGCTCTCATTTCGTTGCCACCATCTCACTCTGCATGCTTTT
GCGGTGGGTGTGAACTACCGTTCTCCGACTCCGATCTGTTGGCGTTGTTC
GGGTCGACCGCGTCCGGGGTGTGACGCGCAGTGGTTCCACCGTGCCGCAG
CCAAGGGTAACGCCAGAGGGCAGCATCACCTCGGTGAGAGAACCGGGAGT
GCGTGCTGGTCCTCAGGATTACAATACGGGGTTTATTCGAACACGTGATT
GTTTGTCGGGCGATCGTTCCGTGATCATTCGGCCTCTGTCTAGTCCAGGC
AGAACCTGGGGGTCACTGCGGGGCATGATCGCGGATGAGCATCGTCCAAG
ACGAGCACGTGGGGGCAAAGTGATAGGATAGACCGCTCACGTTGGACTGA
GTACACGCTGGACAGGTTTCTGGGCTAGGGCATATCGTGCTCGGCTACTG
CACGCCAGCTCAGCAACAGGAGTACCCTCGCTACTTTCCAGAACCATCAT
GTCCCAAGAAGCACCATGTCGCCGGTAGTTTCCTTCTGATCACCTCAAGG
AAACTTTCTTCTTGGTCCCGTACATGTCATGTCGGATTCGGCATGCTTCG
AGACCGCTAACCACGCGCCCCGGTTAACAGCCTCGTATCAGTTCTAGTAA
AAACCCCTTCACAAATCACCCAAAAATCCGATTTTTAGCTCCCCGGCTCT
GCGACAAGTGTCCACGTGGGCGACCAACTGGCGCCAACCGACTGATGGCG
CGCATTTGTACCTCATCGAACATCGACAGGCATCGCGCACGAGTACGGTT
CGGGAGTGACGAAGGATTTGCGAGAGGCGGCTCGCTGGTACTCCCTCGCG
GCCACGCAGGGGCTGGCGGAGTCCAACTATCACCTTGGCCTGATGAAGGC
CCACGGGAGAGGCTTCGCTCAAGACCTCAGCGGCGCCGCGATTCACTTCC
AGAAGGTACCTCGCTCTCTTTGTATTGTACCTCTAGTGGCCAGGCCGGTC
GTTACTCTCGTGCTGTTCCTCTACCCGAAGTCCCCCTCATTCGGTAGGCT
TTAGTGCTGTGCAGAACGTGTTTCTGGTTGAGTATGAGCGACTGTAGCCG
TAAGAAGAACAGGGGTAGGATGGGTCCCCTACGGCACTCGCAGACCCTGA
CCAGCTGCCATCTTCGGAAAAAGCTCCTATAGTAGCCGTCCATCCTATGA
ACCGTCTCACGCGAGTTCGGTAACGCCCGAGAGAGCGTAATCCTGACTAC
TAGGTTCGCAGGACAACTTCCGAGAAGGGTCTTGGTGCGTCCGGAGCATT
GTATTGCCCCTTTCGAGAGGTTGCAGTAGAATCTGTGGACAATATAGCAC
TTCTCGACTGGTGGTGCAGCAAGGGTTCGTTGCTTGGTGAATGAGTTGAC
TCCTTGATTTGATCTACCGGCAGCGTCGAACCCACCCCTGATCAGCCGAT
GCGAACTGCCCATTTGGCCGCACACGCAGGGGGCGCAGCAGCGCCATGCC
CCGTCTATGATGTACCTGGGTAAGATGTTCCTGTACGGTCAAGGGTTTCC
CGTGGACTACGACATGGCTCTCCTCTGGTTCGAGAAGGCCGCAGAGGAGG
TAAGGGACAACTCCCACCCAACTCGGAGAAATTTAGCTCGGAGAACGTGG
TAGGAGTACGGACAGGCGGGACTCGATCGACCTCGCCTATCGTGAAGTAA
GGTGGAGACATCACGCACGAGGAAACTTACCTCATCGACAGCACGAGGCG
AGATTCTGGCATGACTTTGCCCACACAAAGTACTAGTAGTGGTTTCACGG
AAGGCTTCGACGGGCTCTTCTCTTGCCCTAGCGGGCCATATGACGACATG
AAGCCACTGAACGGGCTTTTTTTAGCAGTCATGGGAGTCTCAGGCATCCC
TACAAAAGCACAAGACTCTCGGAACGCACCGGAATAGAAGAACGTGACGG
TCCATCTGAGAGGAAACCCAGCCTTCATCTCGCCTTGACCCTCCCAAAAC
TGAATTGACGCTTGTCGAACCTGAACCAGCCCCCCCCCGAACCCCCTCCG
ACTGTCATTCAACGCTGACGTAGGGGGCCCCACCATTGTCAGACGAGGCT
GCCGCAGCACGGGACGAGCTCAGGTATACATCATACCTTGTCGTACGGCA
TACCATTCACTGTTTTCTACTAATAGACGTGTTTATGTGTTTACGTGTTG
ATGCCACCCGCAAGTTCAAGCTCGGGTGTACTCGTTGCGCGCGGCCGTAG
CTTGGAGCATTTACTTTCGGGTGGGTGCTTCACGGCGCATCGCCCGTAGA
CGTCTGTGGGAGGATGTCGATGTCACCATATTTGTTTGGTACGATCAGCG
CATCGTCGTAGCCTACTACGGCCTACGTGAAATTCAGTCGGGATCAATAT
AGCTGGAAATACTTCGAAGGATGACTACTGTTATGGCAACTGGATCCACC
TCCTGTGGTCCGTTGTCATCCCGTTACGCGCGTCAATGATTTACACGGGA
AGCTGCTTCACGGTTGGTAGCAGACAAGGCCCAAACCTACCATCTTCAGT
GAAGGCGTCGCCAAAAGGGCACAGCAAGCCGTGCGGTCTATAAGCAACGC
AAGAATACTAACGGACTCATCGCCTACTGCATGCCCTTACTTGAACATGT
TCGCAAACCCCTCAGGGCCAGCCTGCTGGAGGCCCAGAGGGTAAATACGG
AACTCGTCGCCGGTTACGACTACGGGCTTATTGCTGGGCAGAGCTGATGT
CGAAGGCTCATATCTGGTTCCGGGAAGAAAAGACTGTTTAGGGGGGAAGA
CGCTAGGGGGGAAGGCCCGAGTTAGCTCGGGCGGTTGGAATAGCGCCTCT
GTTTTCCTGACCCGCCCAAACCTTCGAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig7778:1454..7281- >mRNA_Ecto-sp13_S_contig7778.19023.1 ID=mRNA_Ecto-sp13_S_contig7778.19023.1|Name=mRNA_Ecto-sp13_S_contig7778.19023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7778:1454..7281- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGCGGCACTGGGAGTCATGCTTTTGCACGGGAGAGGTGGTAGCCGGGA TTTTGGCGCTGCGGCCGCTTGGTTCAGGCTTGCGGCGATGGAAGGTCACG TAGAAGCCATGTGGCTGCTTGGGAGGATGCACTGCGAGGGCAAGGGAGTC GACAAAGTCGATTTCGACGAGGCGAACAAGTGGTTCCACCGTGCCGCAGC CAAGGGTAACGCCAGAGGGCAGCATCACCTCGGCATCGCGCACGAGTACG GTTCGGGAGTGACGAAGGATTTGCGAGAGGCGGCTCGCTGGTACTCCCTC GCGGCCACGCAGGGGCTGGCGGAGTCCAACTATCACCTTGGCCTGATGAA GGCCCACGGGAGAGGCTTCGCTCAAGACCTCAGCGGCGCCGCGATTCACT TCCAGAAGGGGGCGCAGCAGCGCCATGCCCCGTCTATGATGTACCTGGGT AAGATGTTCCTGTACGGTCAAGGGTTTCCCGTGGACTACGACATGGCTCT CCTCTGGTTCGAGAAGGCCGCAGAGGAGGGGGCCCCACCATTGTCAGACG AGGCTGCCGCAGCACGGGACGAGCTCAGGGCCAGCCTGCTGGAGGCCCAG AGGGTAAATACGGAACTCGTCGCCGGTTACGACTACGGGCTTATTGCTGG GCAGAGCTGA back to top
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