mRNA_Ecto-sp13_S_contig77777.19022.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77777.19022.1
Unique NamemRNA_Ecto-sp13_S_contig77777.19022.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77777.19022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77777contigEcto-sp13_S_contig77777:80..633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size554
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464047.9620156-UTR-Ecto-sp13_S_contig77777:79..2551681464047.9620156-UTR-Ecto-sp13_S_contig77777:79..255Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77777 80..255 +
1681464047.985455-UTR-Ecto-sp13_S_contig77777:591..6331681464047.985455-UTR-Ecto-sp13_S_contig77777:591..633Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77777 592..633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464047.9739447-CDS-Ecto-sp13_S_contig77777:255..5911681464047.9739447-CDS-Ecto-sp13_S_contig77777:255..591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77777 256..591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77777.19022.1prot_Ecto-sp13_S_contig77777.19022.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77777 256..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77777.19022.1

>prot_Ecto-sp13_S_contig77777.19022.1 ID=prot_Ecto-sp13_S_contig77777.19022.1|Name=mRNA_Ecto-sp13_S_contig77777.19022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MHDRYCCRCTTSTSSFVDTRRRRPHRRNFCKPPPRGKCFMHARAPSTRFR
RKNIRRAISLVHKTNHVHRKPIQIVSKEYRSFAQTHLATNTHLVVYVSNT
PFTHPTSARRL*
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mRNA from alignment at Ecto-sp13_S_contig77777:80..633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77777.19022.1 ID=mRNA_Ecto-sp13_S_contig77777.19022.1|Name=mRNA_Ecto-sp13_S_contig77777.19022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=554bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77777:80..633+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAAAATGCAAACATCAAATGCACTGCTGTTCCAAGCCGAAAGAGGTTT
AAAAACGACCTCATAGTGGGCGCCCAAAAAGAATTTTGTGTTTTGCAACG
GCAACCCATGAACCTGCTCATCAAACAAGCGGGTTTGATGCCCGAGTGTG
TCTGTTGTGCAGCGGCCTAGCGGTTGATGCACGACCGCTACTGCTGTCGT
TGTACAACGAGTACATCATCGTTCGTGGATACAAGACGGCGACGGCCGCA
TCGCCGTAATTTTTGCAAACCTCCTCCTCGAGGGAAATGCTTTATGCACG
CAAGGGCTCCGAGCACGAGGTTCAGGAGAAAAAACATAAGGCGCGCGATC
TCCCTAGTACATAAAACAAACCATGTGCACAGAAAACCCATCCAAATCGT
ATCCAAGGAATATCGCTCGTTCGCGCAAACACACCTTGCAACCAACACGC
ATCTTGTTGTGTACGTAAGCAACACGCCTTTTACTCATCCTACCAGCGCA
AGAAGACTTTGAGAGTACACGCATAAAAGATGGAAGGTTCATGCCCTCAT
TCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77777:80..633+

>mRNA_Ecto-sp13_S_contig77777.19022.1 ID=mRNA_Ecto-sp13_S_contig77777.19022.1|Name=mRNA_Ecto-sp13_S_contig77777.19022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77777:80..633+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGACCGCTACTGCTGTCGTTGTACAACGAGTACATCATCGTTCGT
GGATACAAGACGGCGACGGCCGCATCGCCGTAATTTTTGCAAACCTCCTC
CTCGAGGGAAATGCTTTATGCACGCAAGGGCTCCGAGCACGAGGTTCAGG
AGAAAAAACATAAGGCGCGCGATCTCCCTAGTACATAAAACAAACCATGT
GCACAGAAAACCCATCCAAATCGTATCCAAGGAATATCGCTCGTTCGCGC
AAACACACCTTGCAACCAACACGCATCTTGTTGTGTACGTAAGCAACACG
CCTTTTACTCATCCTACCAGCGCAAGAAGACTTTGA
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