mRNA_Ecto-sp13_S_contig7777.19021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7777.19021.1
Unique NamemRNA_Ecto-sp13_S_contig7777.19021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: D7G848_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G848_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 3.710e-47
Identity = 82/85 (96.47%), Postives = 84/85 (98.82%), Query Frame = 1
Query:   13 DDATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILDDRTHGAPRVEA 267
            DDAT REVLYGYADLLIVGCR+YRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILDDRT+GAPRVEA
Sbjct:   29 DDATIREVLYGYADLLIVGCRHYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILDDRTNGAPRVEA 113          
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: A0A7R9Y7S4_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y7S4_9VIRI)

HSP 1 Score: 108 bits (270), Expect = 1.480e-25
Identity = 52/84 (61.90%), Postives = 58/84 (69.05%), Query Frame = 1
Query:   16 DATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILDDRTHGAPRVEA 267
            D  SREV YG  +  +VGCRYY G+AH GE+V LVREPNNPYD NA+RVDN   +QVGHIK   A  L  ILD    G PRVEA
Sbjct:  138 DEFSREVFYGQFEAAVVGCRYYEGIAHAGEYVTLVREPNNPYDPNAVRVDNFDGKQVGHIKRGTAAALRRILDHTASGGPRVEA 221          
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: R1F415_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F415_EMIHU)

HSP 1 Score: 106 bits (265), Expect = 6.850e-25
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 PGQDDDATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILDDRTHGAPRVE 264
            P   D     EV YG  ++ IVGC+YY+GV H GE   LVREPNN YD+NAIRVDNL+  QVGH+K T A  L+PI+DD +  APRVE
Sbjct:  116 PVSQDYLDEHEVCYGTLNVPIVGCQYYQGVLHQGEMASLVREPNNQYDKNAIRVDNLSAAQVGHVKRTYAAALAPIMDDPSPAAPRVE 203          
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: A0A7S1DN32_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DN32_HEMAN)

HSP 1 Score: 103 bits (258), Expect = 2.840e-24
Identity = 46/85 (54.12%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   10 DDDATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILDDRTHGAPRVE 264
            +++    +VLYG  ++L+VGCRYY G+ H GE+ +LVREP N YDRNAIRVDN+  QQVGHIK  QA +L+P++DD +   P +E
Sbjct:  138 EEERQDTDVLYGKVNVLVVGCRYYGGLLHEGEYAELVREPRNQYDRNAIRVDNMMAQQVGHIKKEQAAVLAPMIDDASPLKPWIE 222          
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: A0A0G4FGH3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FGH3_9ALVE)

HSP 1 Score: 100 bits (248), Expect = 1.380e-22
Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   19 ATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILDDRTHGAPRVEA 267
            +T  EV  G  +L IVGCRYY GVAH GEFV L REP NPYDRNAIRVDN+   QVGHIK   A +L+P+LD     + R  A
Sbjct:  108 STEDEVFAGSVELQIVGCRYYSGVAHAGEFVSLKREPRNPYDRNAIRVDNIQGDQVGHIKREYAAVLAPVLDRALASSARPSA 190          
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: A0A7S2P3P1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P3P1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.770e-19
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   10 DDDATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILD 234
            ++DA       G  DL +VG RYY GV  +GE VDLVREPNN YDRNAIRVDN+   ++GH+K TQA +L+P++D
Sbjct:  103 ENDAEEILTCLGRLDLKVVGVRYYTGVVRVGEHVDLVREPNNEYDRNAIRVDNIRGAKIGHLKGTQAFLLAPVMD 177          
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: A0A3M7NTK3_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 134916 TaxID=2249418 RepID=A0A3M7NTK3_9EURO)

HSP 1 Score: 89.4 bits (220), Expect = 8.560e-19
Identity = 42/75 (56.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   10 DDDATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILD 234
            DDD  +   LYG  D  IVGCRYY G A  GE+V + REP NPYDRNAIR+DN+  +Q+GHI    A IL+P +D
Sbjct: 1181 DDDGYTNYQLYGVLDTKIVGCRYYDGHATTGEYVKVRREPRNPYDRNAIRIDNVMGEQIGHIGRQVAAILAPFMD 1255          
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: A0A7S3Q7T6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7T6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.150e-18
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    7 QDDDATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILDDRTHGAPRVEA 267
            +D +A    +L G  + L+VG R+Y G AH GEFV LVREP NPYDR AIRVDN+  ++VGHIK T A  L+PI+D       R+EA
Sbjct:   20 EDIEAEEECILIGSGEYLLVGIRFYVGTAHPGEFVTLVREPFNPYDRFAIRVDNMHGEKVGHIKGTSAKPLAPIMDTADRLNVRIEA 106          
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: UPI000A2A7FB4 (helicase-like transcription factor isoform X1 n=3 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7FB4)

HSP 1 Score: 88.6 bits (218), Expect = 1.570e-18
Identity = 45/77 (58.44%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   10 DDDATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILDDR 240
            DDD    EV YG   + IVG RYY G  + GE V L REPNNPYDRNAIRVDN+   QVGHIK T A  L+ ++D R
Sbjct:   14 DDDELDHEVCYGEYRVGIVGIRYYNGTVNKGEMVSLNREPNNPYDRNAIRVDNVCGIQVGHIKRTMAMPLANVIDRR 90          
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Match: A0A7S0WFB8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WFB8_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 5.410e-18
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 1
Query:   25 SREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRNAIRVDNLTRQQVGHIKATQACILSPILD 234
            + EV  G   + IVGC+YY+G +H GEFV LVREP NPYD NA+RVDN+  +Q+GHIK   A    PI D
Sbjct:  114 AEEVHLGSLLVPIVGCQYYQGTSHQGEFVVLVREPGNPYDSNAVRVDNMQGEQIGHIKREFAACFQPIFD 183          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7777.19021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G848_ECTSI3.710e-4796.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9Y7S4_9VIRI1.480e-2561.90Hypothetical protein n=2 Tax=Prasinoderma colonial... [more]
R1F415_EMIHU6.850e-2557.95Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S1DN32_HEMAN2.840e-2454.12Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A0G4FGH3_9ALVE1.380e-2259.04Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S2P3P1_9STRA1.770e-1956.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A3M7NTK3_9EURO8.560e-1956.00Uncharacterized protein (Fragment) n=1 Tax=Chaetot... [more]
A0A7S3Q7T6_9STRA1.150e-1852.87Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
UPI000A2A7FB41.570e-1858.44helicase-like transcription factor isoform X1 n=3 ... [more]
A0A7S0WFB8_9CHLO5.410e-1855.71Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7777contigEcto-sp13_S_contig7777:5499..6892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score171.0
Seed ortholog evalue2.5e-40
Seed eggNOG ortholog2880.D7G848
Preferred nameHLTF
Model size273
KEGG koko:K15711
Hectar predicted targeting categoryother localisation
GOsGO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001077,GO:0001228,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016462,GO:0016567,GO:0016740,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019899,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Exons3
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG1001@2759
EC2.3.2.27
Cds size273
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464047.9083574-CDS-Ecto-sp13_S_contig7777:5498..55881681464047.9083574-CDS-Ecto-sp13_S_contig7777:5498..5588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7777 5499..5588 -
1681464047.9229245-CDS-Ecto-sp13_S_contig7777:6434..65341681464047.9229245-CDS-Ecto-sp13_S_contig7777:6434..6534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7777 6435..6534 -
1681464047.9360309-CDS-Ecto-sp13_S_contig7777:6809..68921681464047.9360309-CDS-Ecto-sp13_S_contig7777:6809..6892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7777 6810..6892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7777.19021.1prot_Ecto-sp13_S_contig7777.19021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7777 5499..6892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7777.19021.1

>prot_Ecto-sp13_S_contig7777.19021.1 ID=prot_Ecto-sp13_S_contig7777.19021.1|Name=mRNA_Ecto-sp13_S_contig7777.19021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
PGQDDDATSREVLYGYADLLIVGCRYYRGVAHLGEFVDLVREPNNPYDRN
AIRVDNLTRQQVGHIKATQACILSPILDDRTHGAPRVEAR*
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mRNA from alignment at Ecto-sp13_S_contig7777:5499..6892-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7777.19021.1 ID=mRNA_Ecto-sp13_S_contig7777.19021.1|Name=mRNA_Ecto-sp13_S_contig7777.19021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1394bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7777:5499..6892- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGGCCAGGACGATGACGCCACGAGCCGGGAGGTCCTCTACGGCTACGC CGACCTCTTGATCGTTGGATGCCGCTACTACAGGTGAACCAACGGTATTG GTGTCCTTTCTCTGTACGAGCTCAGCGTATACCGTCTACCTTTATTCACG CTTTTCATCGACGACGTCTCCCTTCAAGCATCTAGATGAGTCGCTACGAT GCTTGTAGGCGGGAATGCATGGTGGCCGGTTCACTGCGTAGTCTGGTAAG TGCCAACACGGACAGACAGAGCGGAACACCCGGTATGGCACAGCAGTTGC GAAAAACGTTTTGACGTCTTTTTGTGTCGTTATTTTTTTCTTAATGATCG AATCGCAGAGGCGTAGCCCACCTTGGCGAGTTCGTCGACCTCGTGAGGGA GCCGAACAACCCCTACGACCGTAATGCCATCAGGGTGGACAACCTCACTC GCCAGCAGGTGGGTTAGAAAGATCCATACCTCGGGTGCACAATGCTAACG GCAACGACATCACCACCATTATCAACAACTGTGACATGATAATCATCAAC AAGGACACGCACGGCAAACAGCAACAACAAAACAACAACAAGTTTCTGTG GGCGCAGAGTTGTTTTTTGCGGAGTAGCGTTCGGCCTCTGAAGGATGCTC GGGAACACACATCGCAGTGTCGAGTGACCGCAGGGATGAGCCCTAACAGC AAAGACACATATTTGTCCAATTACATTGGCTCGGGCTATACGCCCCAACA GGTCGAAGCGGCGGACTTGATGCTATCGTGAGGGCACCCTCGCGGTTGCT GTTGCTTTTTTGACCCCCGCTACAGCAGTCGTGACACGTCCCACACACCA CGTCCCGTACTCTTCAAGGCGAAAAAAGAAATTACCGTCTTTACATGTTG GCATGACCGAAAGCGTGGTACAAATAGGGGTGGAAGGGTCCACGGTGTGT TCCACCGCTCACGCCACAGCAGTTGCTAGAGCCCCTATGAAAAGTATTCG TATTTGGAAATATCAGCAATCAAACGCGGTCGAGAGCTTTACTGATCTCT CCGCTTGTTAGCCCCTTCATTGTCGGTGGGCGATCGGGGTCGAAACATGG ACCGAGGTGCTGTTCCACGAAGTATGCAATGGTTGGAGTGATGGGGGATG AGAAACGGTGAGAGAGATGTGAGCGTGAGTTGCACGAAATGATGAGACAA CTTCCCGCCCTCGCACTTCCCTGCTGTTCGAAGAAGGGTGGTTTGTTGCT CTCAAGCCTATTTAGCACTTTTTACGTCCCCGCCCACCTATTCCTAACCT CAAGGTGGGACACATCAAAGCGACGCAGGCATGCATCCTGTCCCCGATTC TCGACGACCGCACCCACGGGGCCCCGCGCGTAGAAGCCAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7777:5499..6892-

>mRNA_Ecto-sp13_S_contig7777.19021.1 ID=mRNA_Ecto-sp13_S_contig7777.19021.1|Name=mRNA_Ecto-sp13_S_contig7777.19021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7777:5499..6892- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGGCCAGGACGATGACGCCACGAGCCGGGAGGTCCTCTACGGCTACGC
CGACCTCTTGATCGTTGGATGCCGCTACTACAGAGGCGTAGCCCACCTTG
GCGAGTTCGTCGACCTCGTGAGGGAGCCGAACAACCCCTACGACCGTAAT
GCCATCAGGGTGGACAACCTCACTCGCCAGCAGGTGGGACACATCAAAGC
GACGCAGGCATGCATCCTGTCCCCGATTCTCGACGACCGCACCCACGGGG
CCCCGCGCGTAGAAGCCAGGTAA
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