mRNA_Ecto-sp13_S_contig7771.19020.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7771.19020.1
Unique NamemRNA_Ecto-sp13_S_contig7771.19020.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7771.19020.1 vs. uniprot
Match: D7FH43_ECTSI (Exocyst complex component, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH43_ECTSI)

HSP 1 Score: 383 bits (984), Expect = 5.290e-124
Identity = 226/234 (96.58%), Postives = 228/234 (97.44%), Query Frame = 1 
Query:    1 MSSGRKDKRWLKSVADPDLVSFFEDSEFDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQTFRGVHLVETVKPAEKTPTARSNXXXXXXXXXXXXXXXXXXXX-PSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTV 699
            MSSGRKDKRWLKSVADPDLVSFFEDS+FDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQ+FRGVHLVETVKPAEKTP ARSN    XXXXXXXXXXXXXXXX PSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTV
Sbjct:    1 MSSGRKDKRWLKSVADPDLVSFFEDSQFDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQSFRGVHLVETVKPAEKTPAARSNSRAVXXXXXXXXXXXXXXXXXPSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLTV 234
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BLAST of mRNA_Ecto-sp13_S_contig7771.19020.1 vs. uniprot
Match: A0A835ZCG0_9STRA (Exo84_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCG0_9STRA)

HSP 1 Score: 189 bits (480), Expect = 6.080e-53
Identity = 112/215 (52.09%), Postives = 140/215 (65.12%), Query Frame = 1 
Query:   52 DLVSFFEDSEFDAGEYAKGFFEQREASHAAHRVEKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTAVTLQTFRGVHLVETVKPAEKTPTARSNXXXXXXXXXXXXXXXXXXXXPSTSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAANTLT 696
            DL+ FF D  FDAGEY K F+E   AS A+ R E+LE L+RQTE +LR EVVRNYQ FMHAT +I+SME  +  L++LL + A TL TF+ + LVE   PA K     +                 XXXX     GLKLPEWLD+AP ELEELLLERKH+ A  LIR+V+ F+AN++NATNLG GV  IF + + MAA ++ RL+ EI+  NT T
Sbjct:    2 DLIEFFGDENFDAGEYVKKFYENNSASGASARCEELESLRRQTEESLRQEVVRNYQTFMHATAQIQSMEKDIDALRNLLSTAATTLSTFQSIRLVERPDPASKLSPTNAEGGAFGLRAGATGRGGDXXXXXXRG-GLKLPEWLDKAPTELEELLLERKHEAAVRLIRQVKAFAANVRNATNLGAGVADIFAQADAMAAELSCRLITEITGTNTFT 215
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BLAST of mRNA_Ecto-sp13_S_contig7771.19020.1 vs. uniprot
Match: A0A7R9UG23_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG23_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.940e-5
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:  445 STSRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLGRGVERIFQKVETMAAGMAERLLAEISAAN 687
            + +  L+LP WL+ AP ELEE +LER  + A  LI +VR+F A + + + +   +  +F+KV   A  +A RLL E+   N
Sbjct:   83 TANAALRLPRWLEVAPEELEEAILERHSKTAEALIVKVRNFEAQIHDPSAVHDRLREVFEKVRRGAHLLASRLLKEVKTGN 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7771.19020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FH43_ECTSI5.290e-12496.58Exocyst complex component, putative n=1 Tax=Ectoca... [more]
A0A835ZCG0_9STRA6.080e-5352.09Exo84_C domain-containing protein n=1 Tax=Tribonem... [more]
A0A7R9UG23_9STRA1.940e-538.27Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7771contigEcto-sp13_S_contig7771:315..5259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size699
Hectar predicted targeting categoryother localisation
Exons6
Cds size699
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7771.19020.1prot_Ecto-sp13_S_contig7771.19020.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7771 315..5259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464047.8079624-CDS-Ecto-sp13_S_contig7771:314..5151681464047.8079624-CDS-Ecto-sp13_S_contig7771:314..515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7771 315..515 -
1681464047.8225987-CDS-Ecto-sp13_S_contig7771:1620..16861681464047.8225987-CDS-Ecto-sp13_S_contig7771:1620..1686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7771 1621..1686 -
1681464047.834202-CDS-Ecto-sp13_S_contig7771:2003..21231681464047.834202-CDS-Ecto-sp13_S_contig7771:2003..2123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7771 2004..2123 -
1681464047.8547418-CDS-Ecto-sp13_S_contig7771:3021..31521681464047.8547418-CDS-Ecto-sp13_S_contig7771:3021..3152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7771 3022..3152 -
1681464047.8656666-CDS-Ecto-sp13_S_contig7771:4211..42461681464047.8656666-CDS-Ecto-sp13_S_contig7771:4211..4246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7771 4212..4246 -
1681464047.8744528-CDS-Ecto-sp13_S_contig7771:5113..52591681464047.8744528-CDS-Ecto-sp13_S_contig7771:5113..5259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7771 5114..5259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7771.19020.1

>prot_Ecto-sp13_S_contig7771.19020.1 ID=prot_Ecto-sp13_S_contig7771.19020.1|Name=mRNA_Ecto-sp13_S_contig7771.19020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MSSGRKDKRWLKSVADPDLVSFFEDSEFDAGEYAKGFFEQREASHAAHRV
EKLEGLKRQTESALRAEVVRNYQAFMHATEEIRSMEAGLQTLKDLLGSTA
VTLQTFRGVHLVETVKPAEKTPTARSNSRSVAAAAASPEEGEGNGDGPST
SRGLKLPEWLDQAPIELEELLLERKHQEAATLIRRVRDFSANLQNATNLG
RGVERIFQKVETMAAGMAERLLAEISAANTLTV
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mRNA from alignment at Ecto-sp13_S_contig7771:315..5259-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7771.19020.1 ID=mRNA_Ecto-sp13_S_contig7771.19020.1|Name=mRNA_Ecto-sp13_S_contig7771.19020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4945bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7771:315..5259- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCCGGTCGAAAAGACAAGCGGTGGCTCAAGTCCGTAGCCGATCC
TGACTTAGTGAGCTTCTTCGAAGACTCTGAGTTCGATGCCGGAGAGTACG
CCAAGGGCTTCTTCGAGCAACGCGAGGCTAGTCACGCGGCACACAGGTTT
GGCGAGAGAGAGAAAGAGTGCGGGGGAGGTGTAGACGTAGGTATTGCACG
GCGGTAGCAATAGGGCAGCAAATATCGCTGAGATACATTGCGCAGATTGG
ATATACACCCACAGCACGGAGAATCTCTTCCAGTGAAGCAAACAGCCGCG
AAAGGTAGCTACTGTATCGCTGTCTGCTTTGGGGTAGAGGTACTGTAGCG
AATTGTTCTTGCATATGGTAGAACGGAAGACATGGCAGTTCATGCGGTGC
AATTGCTGCATGGCTCCCGCTAATGATGCACAGGTGTGGCGCATCTGTTT
GGCGGGGTGTAGCAGTTTTCAAGTGGAAATGGAGATTGCGGATGGAGAAA
CAACTCAATATATTTGGACACATTCTGGGAGTTGTTGTAGGGCCAGTACA
TACCCGTAGATACGCAGTGCACTTGAGCCTGTAGTCGATGAAGCTGCACC
AGTGAAGTGATGCTCACTCGTGCTATTATTTCACGAGAGGGTCTGATGTC
AATCGGCACATACAAGTGCACGATACCACGCAGCAGAACAGAGCACGTCA
TTCTTTTTTGTGAGGAGTGCATGTTGCTGACTCTTCGGCCCGATGGCATC
TCTGCACACGTACATCATACGGGCAACCCAATCTTGGCAAGCAAACATAC
CGGATAAAGTGTAGAACCGCGTAGGTTGGGGTTTGGGGTTAGGGTCCCCT
GGCTCGCTCATGTTTCGAAAACAGAACCTTTACTACTGTCTTTACGTAGG
CAGTCCGTAGTGTACGATTCGCATCAACAAGCACAGCTGAAAAGAGGGTT
ATTGGCATCATTCCCTCGCCTCTGCTTGCTCCTTTTGCCCCCATCATGCT
TGTTGATATCCAGGGTGGAAAAGCTAGAAGGACTCAAGCGCCAGACAGGT
TAGTGTGTTCTGTGTCTTGCTCTAGGTACAACGCTGCACGCGGCCGACGC
ACTCGTACCCAGCAGCGGCAGCGATGCCGTTATGTTTGCACTGCTGTGTG
CGGACGCCTGTAGAGCCTAGAAACAGGAGCTATGCTGTCGGCCCTCGTTC
ATGAAGACACAACGCCGCAACAAACACGGGCAGTCGCTCATGAACGCATA
CAGTGAATTCGGCCGGTCGACCCGTATACTGGGCGGTGAAATCGCTTGGT
ATGAAGTAGCGAAAAAGACACCCAAAGTTGTCTCGTGCTCTGGACAGCGG
TACCGATGGCGCACTAGCTGCTGGTCTTATCCCTTTGCTCTACGCCGCCT
TCAGCAGGCACCACTACCGACTGCTTTAAGTGTTCCGCAATCAGGCCCTC
CTCTACGGAGGATTAGTACTCCGAGCACTTGGACTCTTGCCACTTTTTCT
CGCCCTCTCCCAATTGAACTGACTATGTGCCTGCAACATGAACTGTTTAT
GGTATGGCATGTTCCTTGTTGGGGTGTGTATCACTCATGAGCCAGCTGGC
TGTTAGAGCCTGAGAGCTAAGGTTTCTCGCAGCTACCGCACCGGCTTTCT
TGCTCTTGTGGGATATTGTGCCATGGATGTACGGAATCCCAGCTGTGTTT
TGACGAAGAATACTGTATCAGGCAAAGCGCTATCATCAACATTTTGTGCT
GTCGCTGCCTCTCTCGTGCCCATTTATAGTTTGAAAATAGGGCTAGCAAG
TCGGCTTTGAGAGGCAAGATTACCGGCAACTGCAAGGCTTTTATGCACGC
CTTTTGCCATTTGGCGAAAATCCTTGCCATGTTGTGGCAAAGAATATTAG
GCGAAGCGCGATCATCGACAGTTGTGTTGTGGTTGTTGTTGTTTGCCTCT
TTCGTAGACTGTGTCGGCTATGAGTGTCGAATTTTTTCACAACTACCGGG
CTTTTCTGCACGCCTTGCGCCATATGGCGAAAACCCCTACTGTTGTTAAA
ATGATTAACAGGCGAGTCGCGATCGTACACCTGTGTTGCCGCCCCTTTCG
TAAACAGAGTCGGCCTTGAGGGCCGAAGTTGTCCGCAACTACCAGGCGTT
TATGCACGCGACGGAGGAGATCCGCAGCATGGAAGCCGGCCTCCAGACGC
TGAAAGACCTTCTGGGATCTACCGCCGTAACCTTGCAGGTACTGCATAGA
GAACAGACAGGCGTTGGGTACGGGTTTGCTGGTGTTGTCACTGTGCTGTC
GCTACGTGTTTGCTGTTGTTCGTTGCTCAGGTAGCGTTTGCGGTGGCAGC
TGCTGTTGTAGCTGATGGCGGTTTGTTGGTGCGTTGGCGTTCCCTCTCCC
GCAATATCTACTGCTGTTGTTGTCTTTGCTATGTTGCCACTGTTTCTTCA
TTAACACTTCCTGTCGATCTTGATCTGTCGATGTTCTCGCCGTGTTGTCG
ATGCTTCTGCGGTAATGGTCAACTGTTGTCGTGATTGCTGCTGTTGTTCT
TGCTATGCCCTGGAAGCTGCTGCTGTTGCTGCCGCTGCTCTTTGTCGGTG
TTGCTTGGCATCCCTGCCGGATGTGGTTGACACAAGTGCGAGGTAGTTCG
CTGAATGTGGTTTTTGCGCAGTTTTTGTTCAACGGACAAGACGACTGGAT
GACGAGCCCCGCCAACGCAAGCCTATGCATGTTCCAGGCTATTTCGGTTT
TCCTGCTCTCACACCGCAGTGCCGATGCCATGTACCGTTGGCACTCTGTT
GGGCACGGACTTTGGTAACTAGTTTTTTCTTTGTTTATGTCATCTTGCGA
AAGAGTGTAAGTATCCTGTGAAATCGTTTGCTTCCACACTTCGCTTGTGG
GGACGACAACGAGTGCAGCCCTGCTGTGTTGCCGCTTGACATGCATCAGT
GCCACAGCTCCATGTCGACATGAAGTTCACCAATGCACGAGTGGCAAGCA
CGTCTTGCAGGACACCAAATGGAACAACAAAAAACAAGAAGATGAACACT
TAAATCTCACGCAGTATTTCCCGGCCACGATCACACACCAACCTGCGTAC
ATACGTCCCTCCACTTGCTGTTGTGCGGCGTTTCAGACGTTTCGAGGTGT
TCACCTCGTTGAAACCGTCAAACCGGCGGAGAAAACGCCGACGGCACGAT
CGAACTCCCGTTCGGTAGCGGCGGCGGCGGCCAGCCCAGAGGAGGGCGAA
GGAAACGTAGGCGTGAATGTCGCGTATGTAGTCAACACTTGGCTTACTGC
AGGCTATATGCAGGCTATGTCTTGGTTTTATGCCAGTTGGTCTGTTTCTG
TGACATGTAACTGTTTCTTCACCTATGGTACGGTAGGCTTATTTCCTGGC
GACTCGCCACAGGTTGTGTCTTGGTGTTCTTTGGTTCTTGTTCTTGAAGT
AGGAGTATGGCCGTCTTTTTTTTGCATATGTCGGCTCGTTTCACGTCGGC
ATTCTGCAGGTGATGTCTGCGTTTCTGTCGTGTTTTTGCGTCTGTCGGCG
TGATCTTTGGCTGTCCGTTTCAGGGAGACGGACCGTCGACGTCAAGAGGA
CTCAAGCTGCCGGAGTGGCTGGATCAAGCTCCGATAGAGGTGAGAAAAAG
AGTTGAATCTCTCGCGCATGTTTTTCTTCTCTTTTTTTTTTTTTTGAACG
CCCAGCAGGGTGTGCTACCTCGTGAGTGTTCACCCTCGCAATCCTCCTTG
CCCGAAAGCTTTGGTCCGGAACTCTGGTTCTGAGCCTGGCATGTGACATC
GGGCACGATTCTGCTTCCTCTCCTGGCGTGTGTACCCGTGGGCACGTTTC
TGTTATCATTTTGCTGATGCTTTCCTGGCATGTGTGTGGTTGTGTTATCG
TGTTGCTGATGCGTTCCTGGCATATGTATGGGTTTAAGCTTCCATTCTCG
TTTTGCTGATCGTGTCCTGGTATATGTGTGTGAACCATAGGGACATTTCG
ATTCTGTTTTATTGGCGGTTTCTGTAGTTGGAAGAGCTGGAAAAGCCGTT
CGTTGCTCGAGCTAAAGCACCAAGAAGCAGAACGTTTTTCGTTCTCTTTC
TGATCACGGTTCCTGCAGGTGGAGAAGGGAAACATCTAGCATAACGCCGA
AGCTACAGCACCAGGAAGCAACGCACGTTTCTTATTCTTCTGTGATGACG
ATTTTTTTTTGCAAATGGAATAGCTGTTGCGGGAGCTGACGCTCCCGAGG
AAGCAACGAAATTTGTGTGTTGTTAATCACGTCAATTCAGCGCTCACACA
CGAAGAGTTCATTGCGTATAGGAGCTCTCCAATCCGTGTCCACACACAAC
GTTCCACGTTTTTATTCTCTTTCTGATTATGAAGTTTGACGTAGTTGGAA
CAGCTACTACTGGAGCGAAAGCACCAGAGGAAGCAGTGACATGCTCGTTG
TCTTTCTGATGTCGACGTTTCCTGCAGTTGCAAGAGCTGTTGCTCGGCCG
AAATCACAAGAGGGAGCAGCGACTGGTCTGTTTGTTTTTTCATCGTTTTC
AGCGCTCACGCGCACAACATACCTGCCATGTGCGATCTCCCGAATCCGTG
GTCAAACAGACTGTTGCACGTGTCTTTGTCTCTCTGATGTCTTCGTGTTT
GGCAGTTGGAGGAGATGTTGCTGGAGGTAATGCACCAGAGGAAGCAGTGA
CATTGCACGTTTCTTATCTCTCTCTGATGGTTTCTTTGTTGCAGTTAGAA
GAGCTGTTGCTGGAGCGAAAGCACCAGGAAGCGGCCACCTTGATCCGGAG
GGTCCGAGATTTCTCCGCGAACCTTCAGAACGCGACCAACTTGGGGCGCG
GGGTGGAGAGGATCTTCCAGAAGGTCGAGACGATGGCTGCGGGGATGGCG
GAGCGCCTGCTGGCCGAGATTTCGGCGGCGAACACGTTGACGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7771:315..5259-

>mRNA_Ecto-sp13_S_contig7771.19020.1 ID=mRNA_Ecto-sp13_S_contig7771.19020.1|Name=mRNA_Ecto-sp13_S_contig7771.19020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7771:315..5259- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCCGGTCGAAAAGACAAGCGGTGGCTCAAGTCCGTAGCCGATCC
TGACTTAGTGAGCTTCTTCGAAGACTCTGAGTTCGATGCCGGAGAGTACG
CCAAGGGCTTCTTCGAGCAACGCGAGGCTAGTCACGCGGCACACAGGGTG
GAAAAGCTAGAAGGACTCAAGCGCCAGACAGAGTCGGCCTTGAGGGCCGA
AGTTGTCCGCAACTACCAGGCGTTTATGCACGCGACGGAGGAGATCCGCA
GCATGGAAGCCGGCCTCCAGACGCTGAAAGACCTTCTGGGATCTACCGCC
GTAACCTTGCAGACGTTTCGAGGTGTTCACCTCGTTGAAACCGTCAAACC
GGCGGAGAAAACGCCGACGGCACGATCGAACTCCCGTTCGGTAGCGGCGG
CGGCGGCCAGCCCAGAGGAGGGCGAAGGAAACGGAGACGGACCGTCGACG
TCAAGAGGACTCAAGCTGCCGGAGTGGCTGGATCAAGCTCCGATAGAGTT
AGAAGAGCTGTTGCTGGAGCGAAAGCACCAGGAAGCGGCCACCTTGATCC
GGAGGGTCCGAGATTTCTCCGCGAACCTTCAGAACGCGACCAACTTGGGG
CGCGGGGTGGAGAGGATCTTCCAGAAGGTCGAGACGATGGCTGCGGGGAT
GGCGGAGCGCCTGCTGGCCGAGATTTCGGCGGCGAACACGTTGACGGTG
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