mRNA_Ecto-sp13_S_contig777.19017.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig777.19017.1
Unique NamemRNA_Ecto-sp13_S_contig777.19017.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig777.19017.1 vs. uniprot
Match: D7FJ00_ECTSI (Suppressor of lin-12-like protein-related / sel-1 protein-related n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ00_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 5.480e-18
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   31 IRSAAELFQLGAGWGHVDCAYELGYMYAQGIGVERDPALAAKY 159
            +  AAELF+LGAGWGHVDCAYELGYMYAQGIGVERDPAL AKY
Sbjct:  746 LERAAELFRLGAGWGHVDCAYELGYMYAQGIGVERDPALTAKY 788
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BLAST of mRNA_Ecto-sp13_S_contig777.19017.1 vs. uniprot
Match: I3UVE5_PSEPU (TPR repeat protein n=3 Tax=Pseudomonas TaxID=286 RepID=I3UVE5_PSEPU)

HSP 1 Score: 48.5 bits (114), Expect = 4.280e-5
Identity = 26/54 (48.15%), Postives = 30/54 (55.56%), Query Frame = 1 
Query:    1 YLSHVKHPLLIRSAAELFQLGAGWGHVDCAYELGYMYAQGIGVERDPALAAKYF 162
            YL   K+P     A E F+     GH   AYELGYMY  G+GV RD A A KY+
Sbjct:  464 YLERRKYP----EAIEYFKQAVELGHAYSAYELGYMYENGLGVARDLATAKKYY 513
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig777.19017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJ00_ECTSI5.480e-1888.37Suppressor of lin-12-like protein-related / sel-1 ... [more]
I3UVE5_PSEPU4.280e-548.15TPR repeat protein n=3 Tax=Pseudomonas TaxID=286 R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig777contigEcto-sp13_S_contig777:691..852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score86.3
Seed ortholog evalue4.9e-15
Seed eggNOG ortholog2880.D7FJ00
Model size162
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
Cds size162
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464047.4820876-CDS-Ecto-sp13_S_contig777:690..8521681464047.4820876-CDS-Ecto-sp13_S_contig777:690..852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig777 691..852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig777.19017.1prot_Ecto-sp13_S_contig777.19017.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig777 691..852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig777.19017.1

>prot_Ecto-sp13_S_contig777.19017.1 ID=prot_Ecto-sp13_S_contig777.19017.1|Name=mRNA_Ecto-sp13_S_contig777.19017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
YLSHVKHPLLIRSAAELFQLGAGWGHVDCAYELGYMYAQGIGVERDPALA
AKYF
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mRNA from alignment at Ecto-sp13_S_contig777:691..852+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig777.19017.1 ID=mRNA_Ecto-sp13_S_contig777.19017.1|Name=mRNA_Ecto-sp13_S_contig777.19017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig777:691..852+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATCTAAGCCACGTCAAACACCCTCTCTTGATTCGTAGTGCCGCGGAACT
GTTCCAGCTTGGAGCTGGGTGGGGCCACGTCGATTGCGCGTATGAGCTAG
GGTACATGTATGCTCAGGGGATCGGCGTGGAACGTGATCCTGCGCTTGCA
GCGAAGTACTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig777:691..852+

>mRNA_Ecto-sp13_S_contig777.19017.1 ID=mRNA_Ecto-sp13_S_contig777.19017.1|Name=mRNA_Ecto-sp13_S_contig777.19017.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig777:691..852+ (Ectocarpus species13 EcNAP12_S_4_19m)
TATCTAAGCCACGTCAAACACCCTCTCTTGATTCGTAGTGCCGCGGAACT
GTTCCAGCTTGGAGCTGGGTGGGGCCACGTCGATTGCGCGTATGAGCTAG
GGTACATGTATGCTCAGGGGATCGGCGTGGAACGTGATCCTGCGCTTGCA
GCGAAGTACTTT
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