mRNA_Ecto-sp13_S_contig77673.19014.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77673.19014.1
Unique NamemRNA_Ecto-sp13_S_contig77673.19014.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: A0A6H5K6E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.880e-16
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 HSWHNVANVLYVDQPVGTGLSFTTNGNYADNDLQVRE 111
            +SWHNVANVLYVDQPVGTGLSFTTNGNYADNDLQV E
Sbjct:  141 YSWHNVANVLYVDQPVGTGLSFTTNGNYADNDLQVDE 177
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: D8LQG6_ECTSI (Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG6_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 5.110e-16
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 HSWHNVANVLYVDQPVGTGLSFTTNGNYADNDLQVRE 111
            +SWHNVANVLYVDQPVGTGLSFTTNGNYADNDLQV E
Sbjct:  143 YSWHNVANVLYVDQPVGTGLSFTTNGNYADNDLQVDE 179
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: A0A835YJ65_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ65_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.890e-10
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 HSWHNVANVLYVDQPVGTGLSFTTNGNYADNDLQV 105
            +SWHNVANVLYVDQPVGTGLS T +  YAD++ QV
Sbjct:  150 YSWHNVANVLYVDQPVGTGLSITADDTYADSEAQV 184
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: A0A448Z901_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z901_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.260e-9
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 HSWHNV-ANVLYVDQPVGTGLSFTTNGNYADNDLQVRE 111
            HSWH+  A VLYVDQPVGTGL+FTT+GNY +ND +V E
Sbjct:  202 HSWHHAPAYVLYVDQPVGTGLAFTTSGNYPNNDQRVNE 239
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: B8BRC2_THAPS (Serine carboxypeptidase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRC2_THAPS)

HSP 1 Score: 57.0 bits (136), Expect = 2.030e-8
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 HSWHNV-ANVLYVDQPVGTGLSFTTNGNYADNDLQV 105
            +SWHN  A +LYVDQPVGTGLSFT NGNY  ND +V
Sbjct:   73 YSWHNAPAWLLYVDQPVGTGLSFTRNGNYCKNDFEV 108
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: A0A7S1BA32_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BA32_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-7
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 HSWH-NVANVLYVDQPVGTGLSFTTNGNYADNDLQV 105
            HSWH + A VLYVDQPVGTGLSFTT   Y  ND+QV
Sbjct:  109 HSWHRSPAYVLYVDQPVGTGLSFTTGKKYCKNDVQV 144
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: F0ZN20_DICPU (Carboxypeptidase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZN20_DICPU)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-7
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 SWHNVANVLYVDQPVGTGLSFTTNGNYADNDLQVRE 111
            SWHN ANVLY+DQPVGTGLSFT  G+   NDL++ +
Sbjct:  151 SWHNAANVLYIDQPVGTGLSFTY-GDSVTNDLEINQ 185
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: A0A7R9VPG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VPG2_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.090e-7
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 HSWHNV-ANVLYVDQPVGTGLSFTTNGNYADNDLQV 105
            +SWHN  A VLY+DQPVGTGLSFT   NY  ND +V
Sbjct:   51 YSWHNAPAWVLYIDQPVGTGLSFTRKKNYCKNDEEV 86
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: A0A8J9S6D4_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S6D4_PHATR)

HSP 1 Score: 52.4 bits (124), Expect = 5.350e-7
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 HSWH-NVANVLYVDQPVGTGLSFTTNGNYADNDLQV 105
            HSWH + A  LY+DQPVGTGLSFTT+G+Y  ND  V
Sbjct:   98 HSWHKSPAYTLYIDQPVGTGLSFTTSGHYPSNDELV 133
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BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Match: W7U5F9_9STRA (Pheromone processing carboxypeptidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U5F9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 6.290e-7
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 HSWHNVANVLYVDQPVGTGLSFTTNGNYADND 96
            +SWH+VANV+YVDQPVGTG SFT    Y D D
Sbjct:  148 YSWHHVANVVYVDQPVGTGFSFTGRRQYCDED 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77673.19014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6E8_9PHAE4.880e-1694.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQG6_ECTSI5.110e-1694.59Carboxypeptidase (Partial) (Fragment) n=1 Tax=Ecto... [more]
A0A835YJ65_9STRA8.890e-1074.29Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A448Z901_9STRA2.260e-971.05Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B8BRC2_THAPS2.030e-872.22Serine carboxypeptidase (Fragment) n=1 Tax=Thalass... [more]
A0A7S1BA32_9STRA1.320e-772.22Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
F0ZN20_DICPU1.320e-766.67Carboxypeptidase n=1 Tax=Dictyostelium purpureum T... [more]
A0A7R9VPG2_9STRA4.090e-766.67Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A8J9S6D4_PHATR5.350e-766.67Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
W7U5F9_9STRA6.290e-768.75Pheromone processing carboxypeptidase n=2 Tax=Mono... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77673contigEcto-sp13_S_contig77673:75..185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score79.0
Seed ortholog evalue5.3e-13
Seed eggNOG ortholog2880.D8LQG6
Preferred nameKEX1
Model size111
KEGG koko:K01288,ko:K09645
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000322,GO:0000323,GO:0000324,GO:0000746,GO:0000747,GO:0001906,GO:0003674,GO:0003824,GO:0004180,GO:0004185,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005802,GO:0006508,GO:0006518,GO:0006807,GO:0006915,GO:0007039,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008236,GO:0008238,GO:0008277,GO:0009056,GO:0009057,GO:0009058,GO:0009405,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010515,GO:0010646,GO:0010648,GO:0010720,GO:0010969,GO:0012501,GO:0012505,GO:0016485,GO:0016787,GO:0017171,GO:0019538,GO:0019748,GO:0019835,GO:0019953,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0030447,GO:0030448,GO:0031135,GO:0031137,GO:0031138,GO:0031640,GO:0031984,GO:0034305,GO:0034641,GO:0035821,GO:0040007,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043900,GO:0043901,GO:0043937,GO:0043938,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044364,GO:0044419,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044703,GO:0044764,GO:0045595,GO:0045597,GO:0045744,GO:0046937,GO:0046938,GO:0046999,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051603,GO:0051604,GO:0051704,GO:0051715,GO:0060238,GO:0060240,GO:0060284,GO:0065007,GO:0070008,GO:0070011,GO:0071704,GO:0075306,GO:0075307,GO:0090029,GO:0098791,GO:0140096,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1903664,GO:1903666,GO:2000241,GO:2000242
Exons1
EggNOG free text desc.PFAM Peptidase S10, serine carboxypeptidase
EggNOG OGsCOG2939@1,KOG1282@2759
EC3.4.16.6
Cds size111
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464047.1796887-CDS-Ecto-sp13_S_contig77673:74..1851681464047.1796887-CDS-Ecto-sp13_S_contig77673:74..185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77673 75..185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77673.19014.1prot_Ecto-sp13_S_contig77673.19014.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77673 75..185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77673.19014.1

>prot_Ecto-sp13_S_contig77673.19014.1 ID=prot_Ecto-sp13_S_contig77673.19014.1|Name=mRNA_Ecto-sp13_S_contig77673.19014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=37bp
HSWHNVANVLYVDQPVGTGLSFTTNGNYADNDLQVRE
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mRNA from alignment at Ecto-sp13_S_contig77673:75..185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77673.19014.1 ID=mRNA_Ecto-sp13_S_contig77673.19014.1|Name=mRNA_Ecto-sp13_S_contig77673.19014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77673:75..185+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGCTGGCACAACGTGGCAAACGTTTTGTATGTGGACCAGCCGGTCGG
CACTGGTCTCAGCTTCACCACCAACGGTAACTACGCCGACAACGATCTCC
AGGTGCGGGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77673:75..185+

>mRNA_Ecto-sp13_S_contig77673.19014.1 ID=mRNA_Ecto-sp13_S_contig77673.19014.1|Name=mRNA_Ecto-sp13_S_contig77673.19014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77673:75..185+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGCTGGCACAACGTGGCAAACGTTTTGTATGTGGACCAGCCGGTCGG
CACTGGTCTCAGCTTCACCACCAACGGTAACTACGCCGACAACGATCTCC
AGGTGCGGGAA
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