mRNA_Ecto-sp13_S_contig7767.19013.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7767.19013.1
Unique NamemRNA_Ecto-sp13_S_contig7767.19013.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: D7G445_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G445_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 4.030e-120
Identity = 159/179 (88.83%), Postives = 168/179 (93.85%), Query Frame = 1 
Query:    1 MKVPASSTLLGLAMVAAFPIKTVTGTHLDDYVLVGCYGDSQSVRIMFNKQSEDIMSASICYDLCNDGTNTHFGTQYGEECWCGIHPALATHGELDIDSCDFPCAGTEEENCGGFDKMTVYDIQAVNGGTGTDYEGCFRDALPRAMPGNPLVFDAMTNKLCVDHCASFGYAWAATEYGQE 537
            MK+PASSTLLGLAMVAAFPIKT+TG HLDD+VLVGCY DS+S+RIMF+KQS+ IMSA ICYDLCNDGTNTHFGTQ+G ECWCGIHPALATHGELDIDSCD  C GT  ENCGGFDKMTVYDIQAVNGGTGTDYEGCFRDA PRAMPG+PLVFDAMTNKLCVDHCASFGYAWAATEYGQE
Sbjct:    1 MKLPASSTLLGLAMVAAFPIKTITGDHLDDFVLVGCYADSRSLRIMFDKQSKPIMSADICYDLCNDGTNTHFGTQFGRECWCGIHPALATHGELDIDSCDMACKGTGGENCGGFDKMTVYDIQAVNGGTGTDYEGCFRDARPRAMPGDPLVFDAMTNKLCVDHCASFGYAWAATEYGQE 179
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: A0A6H5JN62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN62_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 2.200e-106
Identity = 145/178 (81.46%), Postives = 149/178 (83.71%), Query Frame = 1 
Query:   67 VTGTHLDDYVLVGCYGDSQSVRIMFNKQSEDIMSAS---------------------ICYDLCNDGTNTHFGTQYGEECWCGIHPALATHGELDIDSCDFPCAGTEEENCGGFDKMTVYDIQAVNGGTGTDYEGCFRDALPRAMPGNPLVFDAMTNKLCVDHCASFGYAWAATEYGQE 537
            + G HLDDYVLVGCY DSQS RIMFNKQSED+MSAS                     IC+DLCNDGTNTHFGTQYGEECWCGIHPALA HGELDIDSCDFPCAG EEE CGGFDKMTVYDIQAVNGGTGTDYEGCFRDALPRAMPG+PLVFDAMTNKLCVDHCAS GYAWAATEYGQE
Sbjct:   14 ILGNHLDDYVLVGCYADSQSGRIMFNKQSEDVMSASVSCTVLLLRTLAFWIGAWRAQICFDLCNDGTNTHFGTQYGEECWCGIHPALARHGELDIDSCDFPCAGNEEETCGGFDKMTVYDIQAVNGGTGTDYEGCFRDALPRAMPGDPLVFDAMTNKLCVDHCASLGYAWAATEYGQE 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: A0A6H5KUX7_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX7_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 7.980e-90
Identity = 125/158 (79.11%), Postives = 130/158 (82.28%), Query Frame = 1 
Query:   67 VTGTHLDDYVLVGCYGDSQSVRIMFNKQSEDIMSAS---------------------ICYDLCNDGTNTHFGTQYGEECWCGIHPALATHGELDIDSCDFPCAGTEEENCGGFDKMTVYDIQAVNGGTGTDYEGCFRDALPRAMPGNPLVFDAMTNKL 477
            + G HLDDYVLVGCY DSQS RIMFNKQSED+MSAS                     IC+DLCNDGTNTHFGTQYGEECWCGIHPALA HGELDIDSCDFPCAG EEE CGGFDKMTVYDIQAVNGGTGTDYEGCFRDALPRAMPG+PLVFDAMTNK+
Sbjct:   14 ILGNHLDDYVLVGCYADSQSGRIMFNKQSEDVMSASVSCTVLLLRTLAFWIGAWRAQICFDLCNDGTNTHFGTQYGEECWCGIHPALARHGELDIDSCDFPCAGNEEETCGGFDKMTVYDIQAVNGGTGTDYEGCFRDALPRAMPGDPLVFDAMTNKM 171
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: D7FK39_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK39_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.430e-26
Identity = 60/125 (48.00%), Postives = 77/125 (61.60%), Query Frame = 1 
Query:   88 DYVLVGCYGDSQSVRIMFNKQSEDIMSASICYDLCNDGTNTHFGTQYGEECWCGIHPALATHGE-LDIDSCDFPCAGTEE-ENCGGFDKMTVYDIQAVNGGTGTDYEGCFRDALPRAMP-GNPLV 453
            D+  VGCY DS   RI+ ++   + MSA +CY  C+DG NTHFG QY  ECWCGIHP L  +GE L    CDF CAGT   E CGGF KM+V++I A        Y+GC  +AL + +  G+P +
Sbjct:   39 DFSFVGCYADSVGKRILNSRGQHNPMSAEMCYMFCDDGVNTHFGMQYSGECWCGIHPELNQNGEELAAGECDFLCAGTTTGEICGGFLKMSVFEITA--------YKGCQYEALDQPIGRGSPPI 155
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: D7FL81_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL81_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.990e-24
Identity = 63/153 (41.18%), Postives = 77/153 (50.33%), Query Frame = 1 
Query:   88 DYVLVGCYGDSQSVRIM-FNKQSEDIMSASICYDLCN--DGTNTHFGTQYGEECWCGIHPALATHGELDIDS-CDFPCAGTEEENCGGFDKMTVYDIQAVNGGTGT-------------------DYE--GCFRD-ALPRAMPGNPLVFDAMT 468
            DY  VGC  DSQS R+M     +ED+MSA IC+ +C+  D +NTHFGTQYGEECWC       + G  +  S C   CAG   E CGGFD +++Y+I A      T                   DYE  GC  D    R MP  PL  D M+
Sbjct:   51 DYDFVGCVADSQSSRVMPVGPLAEDVMSAEICFGICSAQDDSNTHFGTQYGEECWC-----TGSLGTTETSSACTMDCAGNSAETCGGFDALSMYEIVADTSSPPTPAPTLPVXXXXXXASIVSDDYEVIGCVADNQAARVMPVGPLAEDTMS 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: D7FTE6_ECTSI (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE6_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.370e-22
Identity = 54/115 (46.96%), Postives = 66/115 (57.39%), Query Frame = 1 
Query:   88 DYVLVGCYGDSQSVRIMFNKQ--------SEDIMSASICYDLCNDGTNTHFGTQYGEECWCGIHPALATHG-ELDIDSCDFPCAGTE-EENCGGFDKMTVYDIQAVNGGTGTDYE 402
            DY   GC+ DS   RIM N +         +  MSA  CY +C+DG NTHFG +Y  ECWC + P L  HG ELD   CD  C GT  +E CGGF+KM+VY+I A  G    D+E
Sbjct:   31 DYSPRGCFADSTIDRIMPNIRLVHLQEMTQQGPMSAETCYFICDDGLNTHFGMEYSTECWCAVEPDLTKHGPELDPIECDHLCFGTTTDEYCGGFNKMSVYEITAYQGCHSEDFE 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: D7FMV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV1_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 4.990e-20
Identity = 70/186 (37.63%), Postives = 90/186 (48.39%), Query Frame = 1 
Query:   31 GLAMVAAFPIKTVTGTHLDDYVLVGCYGDSQSVRIMFNKQSEDI-MSASICYDLCNDGTNTHFGTQYGEECWC---GIHPALATHG-ELDIDS-CDFPCAGT--EEENCGGFDKMTVYDI-----QAVNGGTGTDYEGCFRDALPRAMPGNPLVFDA--MTNKLCVDHCASFG--YAWAATEYGQE 537
            G  M+ A+ I     +  D YV +GC  D    RIM  +    I MSA ICY +C DGTNTHFGTQ+G+EC+C        +  HG EL   S C   CAG    +E CGGFD+M+ Y+I       V  G  T   GCF D        + L  DA  M+  +C   C      Y +  T++G E
Sbjct:  441 GFDMITAYRIAGSEPSAGDGYVSIGCLADKNGDRIMDGRMVTSIPMSAEICYGICKDGTNTHFGTQWGKECFCMADADFENMEKHGGELSTASHCQMGCAGFTHRDEKCGGFDEMSAYEIIPEPEVPVIDGPYTAL-GCFEDPRDGDKAMDALFTDATTMSADICYSICMEEDPDYEFFGTQWGIE 625
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: A0A6H5K566_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K566_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.270e-20
Identity = 61/175 (34.86%), Postives = 83/175 (47.43%), Query Frame = 1 
Query:   97 LVGCYGDSQSVRIMFN-KQSEDIMSASICYDLCN--DGTNTHFGTQYGEECWCGIHPALATHGELDIDS-CDFPCAGTEEENCGGFDKMTVYDIQAVNGGTGT---------------------DYEGCFRDALP-RAMPGNPLVFDAMTNKLCVDHCASF--GYAWAATEYGQE 537
            L+GC  DSQ  R+M     S   MSA IC  +C+  D + THFGTQYGEECWC       + G  +  + C +PCAG   E CGGFD +T+Y+I +    T                       D+  C  D+   R MP  PL    M+ ++C   C++    Y    T+YG+E
Sbjct:  353 LIGCVADSQDDRVMSEGPMSAATMSAEICLGICSEMDSSYTHFGTQYGEECWC-----TGSLGTTETSTACTYPCAGNAGETCGGFDALTLYEIISEAPPTPAPLTPPGPMPAPASPVVPSGDYDFVDCVADSQSSRVMPVGPLAEAVMSAEICFGICSAQDDSYTHFGTQYGEE 522
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: A0A6H5KQ76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ76_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.430e-18
Identity = 56/157 (35.67%), Postives = 77/157 (49.04%), Query Frame = 1 
Query:   88 DYVLVGCYGDSQSVRIMFNKQSE-DIMSASICYDLCND--GTNTHFGTQYGEECWCGIHPALATHGELDIDS-CDFPCAGTEEENCGGFDKMTVYDIQAVNGGTGTDYE--GCFRDAL-PRAMPGNPLVFDAMTNKLCVDHCASFGYAWAATEYGQE 537
            DY L+GC  D +  R+M     E D MSA IC+D+C +   T+THFGTQYG EC+C         GE  + + C + C G  +E CGGFD++T Y I       G  Y   GC  D    R M    +    M+ ++C   C         T++G+E
Sbjct:  305 DYELIGCRVDDREARVMSVGPIEGDAMSAEICFDICRELHPTSTHFGTQYGNECFC-----TDVLGESAVSTDCTYDCIGNPDETCGGFDRITAYRIAGSEPSAGDGYVSIGCLADKNGDRIMDRRMVTSIPMSAEICYGICKDGTNTHFGTQWGKE 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Match: D7G5F7_ECTSI (WSC domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F7_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.450e-17
Identity = 55/154 (35.71%), Postives = 72/154 (46.75%), Query Frame = 1 
Query:  100 VGCYGDSQSVRIMFN-KQSEDIMSASICYDLCN--DGTNTHFGTQYGEECWCGIHPALATHGELDIDS-CDFPCAGTEEENCGGFDKMTVYDIQAVNGGTGT---------------------DYEGCFRDALP-RAMPGNPLVFDAMTNKLCV 483
            +GC  DSQ  R+M     S D MSA IC  +C+  D + THFGTQYG ECWC       + G  +  + C   CAG   E CGGFD +T+Y+I +    T                       D+ GC  D+   R MP  PL  D M+ ++ V
Sbjct:  129 IGCVADSQDDRVMAEGPMSADTMSAEICLGICSGMDASYTHFGTQYGNECWC-----TGSLGSTETSTACTMDCAGNTAETCGGFDALTLYEIVSEAPPTPAPFTPPGXXXXXXSPVVPSGDYDFVGCVADSQSSRVMPVGPLTEDVMSAEVGV 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7767.19013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G445_ECTSI4.030e-12088.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN62_9PHAE2.200e-10681.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUX7_9PHAE7.980e-9079.11WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FK39_ECTSI1.430e-2648.00WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FL81_ECTSI2.990e-2441.18WSC domain containing protein n=1 Tax=Ectocarpus s... [more]
D7FTE6_ECTSI1.370e-2246.96WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FMV1_ECTSI4.990e-2037.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K566_9PHAE9.270e-2034.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ76_9PHAE1.430e-1835.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5F7_ECTSI2.450e-1735.71WSC domain containing protein n=1 Tax=Ectocarpus s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7767contigEcto-sp13_S_contig7767:122..6860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score348.6
Seed ortholog evalue1.7e-93
Seed eggNOG ortholog2880.D7G445
Model size537
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
Ec32 ortholog descriptionCarbohydrate-binding WSC, subgroup
Ec32 orthologEc-00_007250.1
EC1.1.3.9,1.2.3.15,3.2.1.59
Cds size537
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464047.0784178-CDS-Ecto-sp13_S_contig7767:121..1941681464047.0784178-CDS-Ecto-sp13_S_contig7767:121..194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7767 122..194 +
1681464047.093029-CDS-Ecto-sp13_S_contig7767:4989..50901681464047.093029-CDS-Ecto-sp13_S_contig7767:4989..5090Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7767 4990..5090 +
1681464047.1037536-CDS-Ecto-sp13_S_contig7767:5613..56761681464047.1037536-CDS-Ecto-sp13_S_contig7767:5613..5676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7767 5614..5676 +
1681464047.1129723-CDS-Ecto-sp13_S_contig7767:6064..63011681464047.1129723-CDS-Ecto-sp13_S_contig7767:6064..6301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7767 6065..6301 +
1681464047.1307755-CDS-Ecto-sp13_S_contig7767:6797..68601681464047.1307755-CDS-Ecto-sp13_S_contig7767:6797..6860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7767 6798..6860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7767.19013.1prot_Ecto-sp13_S_contig7767.19013.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7767 122..6860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7767.19013.1

>prot_Ecto-sp13_S_contig7767.19013.1 ID=prot_Ecto-sp13_S_contig7767.19013.1|Name=mRNA_Ecto-sp13_S_contig7767.19013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
MKVPASSTLLGLAMVAAFPIKTVTGTHLDDYVLVGCYGDSQSVRIMFNKQ
SEDIMSASICYDLCNDGTNTHFGTQYGEECWCGIHPALATHGELDIDSCD
FPCAGTEEENCGGFDKMTVYDIQAVNGGTGTDYEGCFRDALPRAMPGNPL
VFDAMTNKLCVDHCASFGYAWAATEYGQE
back to top

mRNA from alignment at Ecto-sp13_S_contig7767:122..6860+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7767.19013.1 ID=mRNA_Ecto-sp13_S_contig7767.19013.1|Name=mRNA_Ecto-sp13_S_contig7767.19013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6739bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7767:122..6860+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGTCCCCGCTAGTTCTACGCTCCTGGGCCTCGCGATGGTGGCAGC
GTTTCCCATCAAGACCGTCACCGGTGCGTGTTTTACTTTGTACATCAGTT
TTTGGGCTGCACTTTCGTGGACAGGGAACTTGGAGTTCCCTGTTCCCTCT
TTTAAGTCTCGTGTCTCGAATTAACACATCTCCAGGGAACAAGGAACAGT
TCATCACGCGCCCGCGGCCCGTAGGCACTGAAGGCAACAAATATAACAAA
TACATACACAAAGACGAGTGGGGGGTATAGAGGAACGAGGAGTGGTTTAG
GTTTCGAAGCAAGCTGCTGACGAGCGCACATAAAATACATGTGCTAGGTA
TCGGCCAGAAAAGGCGGTGCTCGTCATGCAATCCGCACCCTCGAGAGTGC
TCTGGAAGACTTGCTTTTTGAATTCTGGTCACGGGGCAGCTTGCCGTCTT
TTCGACACATTCTGTTCCCCTCTACAACCGGTACAAGAGCCATCTGCCGC
CGTTTTTTCGCATGCAAGACATCTGATGATGGTGGCAACGCCTCCACGGC
TTGAAGTGGTAGCATGCACCATTTGCGGCAGCCACATGCCCGAGAGTGTT
CACACACATCCCACCACATCCTGACTTTCCACCGAAGAGCCCGTGTTTCA
CGTTCCTTGAATGGTCTTCTGGATAGAGGTTGTTTGCGCAAGACACGTTT
TACATAATCAGCCTTTGAAGTATTTCCACCGTGCGGACAGAATCAACATT
GCGGACGGATGCGGATACGCACATTTGCAAGAGGCATCGAATGTTGTGCT
GTCTTTTGTTTCGAGCTCGACGAGCACATCGCCCGCCACAGAACATCAAC
CAGCATACAGCATGGACAAGCGGGACAGATACGAGCGGCAACCCCACATT
CAAATGCGCCACAGTGAATGATATCAAGCCTGCCGAATTTCCCCGACACG
GAGTGAGCAGTCTTCCCATACACAACGATACGCAACCACCCAAGTTGTGT
GCCATACGCATATGTGGCAAGCAAGACGCAACAAATGAAGGCCGAAAGCA
GAGGCGCAGTAAGCAAAACCTGAACCGTTTCGGCAACCGCGTCCTGTGAG
AACGCACAGAAGTGGTAGACCCTCAAGCCCTTCGAAGTCTCTCTCGATTT
TCGTGTCCAAGGGCTTGAGCCATGCGACGGTCACCTCCCGGCTGTGTGAC
GGTCGGCTGTGCGTGCATGCATGTGGTATGTGGTTGTGTGCGTTCAGCAA
GCTGCATAATGTCCGCTCTGTCGATCTCTCAGCGAGCAGCTGGTGGTTGG
TACGCTTCGACCCACGCAACAACACAGCCCCCAATTGATGTAGGAGCACA
TGGCGCATGGCTCTATGCCCACGGTGCAGGTCGTGTAGGCTCGGCTTCTG
CGGTTTTCGATAGCTGGCCTCGACGTATGTGCTCGGTATTCGTTCGAGGT
GCTTGTCTGTTCGCAGCCCTTGCAAATGTCGCTTTCACCGGACGTGCGCA
CAATAGCAGTTGCTGGACATGTGTTCAGCCACCAATAGCGGTTATCGGTC
CAATTTTTTCAGAGATAGAGACATTGGTCAGCCCCTTCGCGTGGTCGATG
CTCATAAAAATAGCACACAACAACACACACACGCCATGCGGTGTGCGGAT
CGAGAGCTGTAGCGCAAAGAAGCGGAAAACGGCTTTCTAGCACCAGGTGC
GGAAAAAAAACACTGGGGCTGCACCCCCCCACACGGCCCAACTGTGGCCA
ACGCGTAGAGTCTCAAACATTCTTGACCAGAAGGAAGCGCACTCAGAATT
GACGCGCAGGGAGAGATCGAAGCTTACCACAAGGATCGAATAACAAGCTC
GTTGAGAAGTTCTTCAGTGCGTACACGGAGGGGGCTAACCCCTCCGATGG
CGAGTAAAGCCAGAGCTACAGTGGAGCAGGATTGCACCGTAGAAGTGACG
GACGGCGCACGGGCAAGAGCGTGATGGCGCATCCGCCACACTCGTGGCTA
TCGGCAGATTTTGACCAGCTTGAAGCAGAGTGCGCGGAGTTGTGTGGCGT
AGGCGAGGCAGCGCGCTATCTTAGCAAGGCAAAGGTGGCGTTCCTCGCAG
CGAATATCAGAGAGAGGTTATGTTGAAAATGGTCGATACACACGACATGT
ACATGTAGTACATATGAGCCGCTCAAGCACGTGGTGTTGTTGCCATTGCG
TTTTCACGAACTTCCCCCAGGTTCGTTCGAGATGGGAACGATTTTCCAGT
AGGGCAAACAGTCAATCAGGGAAAACAAGCTTTGCGCTCTCGTGAATTGA
AATTCATCAATGTGCTTGATGTGCTTGCTGTGTTGTCATCCTTAGGGTCG
ATACTTCTTCATCTGGCCCCTCGTATGACTGCTGCAATCAGACACATGCA
GCCTGCATCAAGATGAACTTTCGACGCTGCTCTTGTTGGGCAAGAACGGG
CTTTTTCCCGGTTTAGCGGTTCATAAGCGCTGGAGAGGTTTAGCGGCGAT
GCCCTACGGAACGGGCCCGCAGTTAAGGGAAATTCTGTTAACGAGGCTCA
ACAAACTACGAAAATGAAGAAGCCAGAACTAAGAAACACAGCTCAGCGGT
GGATCCCACACTAAACTCCTTATGATAACCTGTGCTTGACAGTGGCGATG
CGAAAAAAAAATGAGCCTCGACCGGATTTTGACGTTTCTTATCTCCGGGC
CCGTTCTGATAGCGGTTATATACTATTTCGTGACGCTGGACCGCTAAACC
GGGCCCACGACTGTACCGAAAAGTTATCTGCACCCACCGGGACGCATATA
AGCCATGCACCCACACCTTTTTTACCGACGGAAATCTTGTCTGAGGAACG
AGCGTCACGAACATGTATGGGGTTTCTTGTTTCTTCAACCTGTCGCTCTG
CTACAGGTAGGCTGTCGTGGTTTTCTGTCCCTCCAAGCATCAACTACATT
AACCCGGTTAAATCCCTAACGCTAACCCTAACCCCAAACCGACCCAATAG
GCGCTAGGTTGGCATTGGGTGGCTCAGTTCTAGGTTGTTGTGCCTGCATT
AAGGCTAAGGTTATAGCGCTGCGTGGCTCAGTTCTAGGTTGGTGTGCCGT
CATTGGGCTAGGTTGGCGTTGGGCGGCTCAGTTCTAGGTTGGTGTTCATG
CGATCGACCTAGATTGGTATTGATGGGATAGCTTCTAGGTTGGTATTGCA
TGAATAGGTGCTAGGTTGGTGTTCATGCGATCGACCTAGGCTGGTGTGGC
TCGGATAGGTGCTAGGTTGGTGTTGACGCGGGTAGGTGCTAGGTTGTGTG
GACCTAGGTTGCTCTTGGTTGGGTGGTTCTGTCGGTAAAGAAACGGTGGG
GGTGTATGGCTTATGTGCGTCCCCATGGGTGTATCGAATATTTTTCACGA
CTCTATGGCAAAATCTCGTTGCAGATTTGGGCAGTCGCTTCGGAGGAAGT
TCGAACACCCCGAATTGGTCGTTACGAGACAAATTTTGTTTTGCGAGAAC
ATGTCGCACGTCACACACTTGTGGATTGAAATTATGGTGCGGTGTAACTA
CCTCAAACAGGGAACGCGCGTGTCAATTCTTGTTTCCAGGAAAGTTATGT
TGTGTGGCTGGCCAATCAGACAACATTTTTGAGTTCCCTGTTCCGTGTTC
CCCGTCCCGAAACGTGCAGTTAAGTCACGCCCTTATCATCGCTACTGCTG
CTTCGTTTGGATGTTTTTTTTTTGCCTGGGTATCTATGTAAGTCGACATC
ATAGTAGTCTAAATATGCAATGTTTTTGCGTGTGATCTCTCTCCCTCTGT
GTGTGTTTTTCTCTGTACGGTGTATGTGTGCGTCAACCCAATATGGATTA
GCATGCGGCCGTTATCCTCCAGAGCCAACGTTTTTCGCTTGGCACAGACT
TGTTGCGCGACCAATTTCGAATCAAAGTCCGCTCATACTTCGACGTGGCT
TGCTTTCATGGACTGAAACCAAATACTCCGTACAAATGAACAGGACGCGT
AAGTGTTCGGGGTATCTCGCCCGCTCGCCTCCCCCCTCCCTCTCTCTCTC
CTCCTCACTCTCTCCTCCCTCCCTCCCCCTCCATCCCTCTCCCTCTCTCT
CTCTCTCTCTCTCTCTCTCTGTCTCACTCTCCCCGACAATCCACGGGAAT
GACATCAAGAGTGTCCGAAAGGCGAAATATTTCCCCACACCGCACCCCGC
ACCGCACCCCGCACCGCACCCCATGGGAATTCAATCAAGAGTGTGCCAGA
GTCCGAGAGCTTCCGACTTTTACACAAAACGTCGCGTTTGATGACGTAAA
CCTGCCAATGTATCATTGATTCTGCTCGCTGTGTTCACCCCATGTCATCC
GCGTTGCTTTTTGGTTGGTGGCATATATACACACGGTACATATCTAGACA
GAAGATAGACGCAGCCCACTTGAAAAAATATCTGAGATTCTGCTAGATAA
CGGGTCGGGGTTGTGACAAAAAAAGAAGAAATGTGGCGAACGAAACGGTT
TTACATGCACACTTCACACCAGGCACACACAGCAGCCGCACTCTTTGATT
TTTTAGTTGGCTCGAGTAGACGTACGTGCCCTTAAGGCTGTGGCTAACAT
TCGTGTATGAGTGTTGTGTGCAATGTCGCGGAGGAGGCCGATTTCTTTGG
CTTCCCTTTTCTTCAACAACGCCTTTCTTCAACCACACCCACACGTTCAC
CCTTCCTTCCAATTTCCAAGAACACCCTGGTGCCGGAATCATCACCCTAC
TCTCGCCGCACCGCACTTTCCATCGTCATGATGGAGAGCGGGACCTGTTG
GCCCTCCCGGCCCTTGCATTGATCGACCGTACTGACCGCGTGTTCTTCTC
TCATTTTCTTGATTATAGGGACCCACCTAGACGACTACGTCCTGGTCGGG
TGCTACGGTGACAGCCAGAGCGTTCGGATCATGTTCAACAAACAGTCAGA
GGATATCATGTCTGCATCCGTGAGTTGCACCGTGTACGTGTGCTGTGTGC
ATGTGTGTATCTACGGTCTACATACGCACGGCAGTGTGCGCATTAGGGTC
TTGGGCGCATGCCGGGACGCGGGGGGGAGAGGTCGAAGAGAGAAAAATAG
ATGGATGGGGGGTTCTTTTGTTCAGTCGACGTTTTGTCCGGGCGATGTTC
ATCTCAATTCTTCTTTTCTTCATTAAGGGATGGGTGGGGTTGTTTTGCCA
TGTCGTGTTTGTCGTCAGAACGCAACCGACAGCAGTGCCTGCTGCACCTC
TCCGGCCACCGGCGCCCTTTGCATATAGCCCATTTTGTACTTCCACAACA
GGATATATACCTGCAGCAGTATATATATATCCCTCTTCGCGCTGATTTTC
CTCGTTGTGTTCCGACGTAATTCGTCTGCAAGCAATGTGTTTGTTTTCTG
CGTGTTTCGCAAGGACGTATAATGATATCGATGATTTTTGGGTTCATTGC
TGAAGACTCTCGCCTACTTGGATTGGTGCTTGGCGCGCGCAGATCTGCTA
CGACCTGTGCAACGACGGTACCAACACGCACTTCGGCACCCAGTACGGGG
AAGAGGTATGTATGTGTGTACGTATAATACGTATTCGTGGGTCCGTGTTG
GAACCGTGGTGTGACGGTGAATCCCGTTTTGTAACCGTAACGAGACTGCT
GTAATGAGGCCGTATTTTAACTGCGGAGAGACCGTACTGCTGTAGCCGGA
CCGTGATCGGAACGTTTGTCGGAATGCAGCTCATGTGCATAGCCATCACT
AAGAGATACGGTAACCCATCCACGAGGAATCAGAGTGTAACTGCAATGCA
ACCGAGCTGTCACTGCAATCCCACCGAAATGTACTTGGAACGTATTCCCA
GAGTACTCGTATTGGAGGGATGCGAGGTGTGCATGATGTTGAGTACCCCT
CTTCTATGGGCCCTTTTTATGTCATATTGACGTGAACAAATAGTGCTGGT
GCGGCATCCACCCGGCCCTGGCGACGCACGGGGAGCTGGATATCGACAGT
TGCGACTTTCCCTGCGCGGGAACCGAAGAAGAGAACTGCGGCGGCTTCGA
CAAAATGACCGTGTACGACATCCAAGCCGTGAACGGTGGCACTGGCACCG
ACTACGAGGGCTGCTTCCGCGACGCGCTGCCCCGGGCGATGCCGGGAAAC
CCCCTCGTGTTTGACGCCATGACCAACAAGGTCGGTTTGTTTATTGTTCA
TCATGTAAGATATCAAGTATGTGCTTGGTTGGTTCGTTCAAGATCTGGCG
CGTGAGGTGGATGGAGTCGTTAATGAACCAAAATTGAGTTGGTTACATGA
GCGTGTGCGTGCTACTTGGTCGCACTTGTTTGCCTTTCTCGCCTGCTGCG
AACGCCGAACTAATGTTTATTTAGCACAGATGTTTTTCGTCCGTGGCCTG
TTGTGTGGTTGTTGTTGGTGGTGGTGCTAGTGGTACTGCTACTACTGTTA
CTACTGTTGTTATTGTCGCTGTTACATGATGGACAATATTTGTGAATTTT
TCGTGCAACATGTACCAGCGGTAAAACGCGCGGTAAGCAAGGTCCGCCAA
GCCGGCAAGCACCATTCATCCCATTAATCCACCCCACACTCCCCTCCCCA
CCCGTACCCACCCGGCCGTTATTTGCGTCTCGCGATCCTCCTATACGACT
CCCGCGCTCTCTACGTGATGCTGAAGCTATGCGTGGACCACTGTGCTAGC
TTTGGATATGCCTGGGCCGCAACCGAATACGGCCAAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7767:122..6860+

>mRNA_Ecto-sp13_S_contig7767.19013.1 ID=mRNA_Ecto-sp13_S_contig7767.19013.1|Name=mRNA_Ecto-sp13_S_contig7767.19013.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7767:122..6860+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGTCCCCGCTAGTTCTACGCTCCTGGGCCTCGCGATGGTGGCAGC
GTTTCCCATCAAGACCGTCACCGGGACCCACCTAGACGACTACGTCCTGG
TCGGGTGCTACGGTGACAGCCAGAGCGTTCGGATCATGTTCAACAAACAG
TCAGAGGATATCATGTCTGCATCCATCTGCTACGACCTGTGCAACGACGG
TACCAACACGCACTTCGGCACCCAGTACGGGGAAGAGTGCTGGTGCGGCA
TCCACCCGGCCCTGGCGACGCACGGGGAGCTGGATATCGACAGTTGCGAC
TTTCCCTGCGCGGGAACCGAAGAAGAGAACTGCGGCGGCTTCGACAAAAT
GACCGTGTACGACATCCAAGCCGTGAACGGTGGCACTGGCACCGACTACG
AGGGCTGCTTCCGCGACGCGCTGCCCCGGGCGATGCCGGGAAACCCCCTC
GTGTTTGACGCCATGACCAACAAGCTATGCGTGGACCACTGTGCTAGCTT
TGGATATGCCTGGGCCGCAACCGAATACGGCCAAGAG
back to top