mRNA_Ecto-sp13_S_contig77666.19012.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77666.19012.1
Unique NamemRNA_Ecto-sp13_S_contig77666.19012.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77666.19012.1 vs. uniprot
Match: A0A6H5K108_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K108_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.920e-14
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   10 QVVLVADQTYRPGEEVCTTYGDMDNAKRLFSFGFV 114
            +VV VAD+TYRPGEEVCTTYGDMDNAKRLFSFGFV
Sbjct:  331 EVVFVADRTYRPGEEVCTTYGDMDNAKRLFSFGFV 365
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BLAST of mRNA_Ecto-sp13_S_contig77666.19012.1 vs. uniprot
Match: D7G231_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G231_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 7.920e-14
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   10 QVVLVADQTYRPGEEVCTTYGDMDNAKRLFSFGFV 114
            +VV VAD+TYRPGEEVCTTYGDMDNAKRLFSFGFV
Sbjct:  331 EVVFVADRTYRPGEEVCTTYGDMDNAKRLFSFGFV 365
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77666.19012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K108_9PHAE7.920e-1491.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G231_ECTSI7.920e-1491.43SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77666contigEcto-sp13_S_contig77666:491..604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score72.0
Seed ortholog evalue6.7e-11
Seed eggNOG ortholog2880.D7G231
Model size114
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2D17T@1,2SH13@2759
Cds size114
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464047.032256-CDS-Ecto-sp13_S_contig77666:490..6041681464047.032256-CDS-Ecto-sp13_S_contig77666:490..604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77666 491..604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77666.19012.1prot_Ecto-sp13_S_contig77666.19012.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77666 491..604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77666.19012.1

>prot_Ecto-sp13_S_contig77666.19012.1 ID=prot_Ecto-sp13_S_contig77666.19012.1|Name=mRNA_Ecto-sp13_S_contig77666.19012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MFSQVVLVADQTYRPGEEVCTTYGDMDNAKRLFSFGFV
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mRNA from alignment at Ecto-sp13_S_contig77666:491..604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77666.19012.1 ID=mRNA_Ecto-sp13_S_contig77666.19012.1|Name=mRNA_Ecto-sp13_S_contig77666.19012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77666:491..604- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCCCAGGTCGTGCTCGTGGCAGACCAAACCTACAGGCCAGGCGA
AGAAGTGTGCACGACCTATGGTGATATGGATAACGCCAAGAGGCTCTTCT
CCTTCGGGTTCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77666:491..604-

>mRNA_Ecto-sp13_S_contig77666.19012.1 ID=mRNA_Ecto-sp13_S_contig77666.19012.1|Name=mRNA_Ecto-sp13_S_contig77666.19012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77666:491..604- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCCCAGGTCGTGCTCGTGGCAGACCAAACCTACAGGCCAGGCGA
AGAAGTGTGCACGACCTATGGTGATATGGATAACGCCAAGAGGCTCTTCT
CCTTCGGGTTCGTC
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