mRNA_Ecto-sp13_S_contig12268.1901.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12268.1901.1
Unique NamemRNA_Ecto-sp13_S_contig12268.1901.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: D8LMK5_ECTSI (Similar to tripeptidylpeptidase II n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK5_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 2.600e-56
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 1
Query:   16 QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVS 318
            QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVT AADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAY LFPKLLVTRVKAERRKDWDKKHLAAE +
Sbjct:   61 QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTTAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYGLFPKLLVTRVKAERRKDWDKKHLAAEAA 161          
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: A0A7S2HF30_9STRA (Subtilisin (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HF30_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.240e-33
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 1
Query:   16 QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPS 324
            QV PDG  K++DIVDCTGSGDV T+T     + T   DG+REI  LSGR LRLN  W NPSGEWR+G+KRAYE +PK LVTRVK ER+K W  K   AE+  S
Sbjct:   23 QVTPDGKKKIIDIVDCTGSGDVSTTTKT---AHTTGEDGIREITALSGRVLRLNGAWDNPSGEWRLGLKRAYEFYPKPLVTRVKNERKKAWLSKQHTAELQSS 122          
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: A0A7R9V402_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V402_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 3.980e-29
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 1
Query:   16 QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPSVSCLA 339
            QV  +G PK+LD++DCTGSGDVDTSTV+K       ADG   I   SGR+L+LNP W NP+G+W VG K  Y+LF + LVTR++ ERR+ WD++H AA  + +    A
Sbjct:  160 QVTSEGKPKILDVIDCTGSGDVDTSTVVK-------ADGDGCIVSPSGRSLKLNPAWKNPTGDWHVGCKHVYQLFSRTLVTRMREERRRQWDERHRAAGAAAAADVAA 260          
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: A0A836CLL6_9STRA (Subtilase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 8.170e-29
Identity = 60/101 (59.41%), Postives = 71/101 (70.30%), Query Frame = 1
Query:   16 QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVS 318
            Q   DG PKV+D++DC GSGDVDT+T + G    A  DGVREIKGLSGR LRLN  W NP G WRVG+KRA+EL+P+ L   VK ERRK +D    AAE +
Sbjct:   51 QTTSDGRPKVIDVIDCGGSGDVDTTTTVTG----AETDGVREIKGLSGRALRLNAAWENPGGAWRVGLKRAFELYPRGLTAYVKGERRKRFDAAQRAAEAA 147          
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: A0A1X2IXE8_9FUNG (Tripeptidyl-peptidase II n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IXE8_9FUNG)

HSP 1 Score: 115 bits (288), Expect = 1.330e-27
Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 1
Query:   10 QRQVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKK--HLAAEVSPSVS 330
            + +V  DG PK++D+VDCTG GDV TST++K  S     + V  I+GLSGRTL L+PKW NPSG++R+G+KRAYELFP  L++R+K+ERR++++ K  HL  E    ++
Sbjct:   61 KEKVTTDGKPKIVDLVDCTGGGDVKTSTIVKAISKEINGENVSVIEGLSGRTLILDPKWKNPSGDYRIGLKRAYELFPSELISRLKSERRQNFEVKQAHLIGEAQTRLA 169          
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: A0A1Y1IEG1_KLENI (Tripeptidyl-peptidase II n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IEG1_KLENI)

HSP 1 Score: 114 bits (286), Expect = 2.490e-27
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   19 VCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKH 300
            V  +G PKV+D+VDCTGSGDVDTS V+K     A ADG+  I+G SGR LR+NP+W NPSGEW VG+K  +ELF K L  RVK ERRK WD KH
Sbjct:   58 VTSEGKPKVIDVVDCTGSGDVDTSKVVK-----ADADGM--IEGGSGRQLRVNPEWKNPSGEWHVGVKHLFELFTKGLTERVKKERRKSWDAKH 144          
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: D8R7G9_SELML (Tripeptidyl-peptidase II n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R7G9_SELML)

HSP 1 Score: 112 bits (281), Expect = 1.170e-26
Identity = 58/98 (59.18%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   16 QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAA 309
            Q+  DG PK++DIVDCTGSGDVDTS V++        D    I G SG TLRLN  W NPSG+WRVG K  YELFP+ L TR+K ERRK WDK H  A
Sbjct:   69 QITSDGKPKIIDIVDCTGSGDVDTSKVVR-------QDDKGCIIGASGATLRLNESWVNPSGDWRVGCKFVYELFPERLSTRLKRERRKHWDKNHREA 159          
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: A0A5N6LVC8_9ASTR (Tripeptidyl-peptidase II n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LVC8_9ASTR)

HSP 1 Score: 112 bits (281), Expect = 1.180e-26
Identity = 57/95 (60.00%), Postives = 68/95 (71.58%), Query Frame = 1
Query:   16 QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKH 300
            QV  DG PKVLD++DCTGSGDVDTSTV+K     A A+G   I+G SG +L +NP W NPSGEW VG K  YEL    LV+R+K ER+K WD+KH
Sbjct:  117 QVTSDGKPKVLDVIDCTGSGDVDTSTVVK-----ADANGC--IRGASGASLTINPSWKNPSGEWHVGFKLVYELLTDTLVSRLKKERKKKWDEKH 204          
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: A0A250XIK6_9CHLO (Tripeptidyl-peptidase II n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XIK6_9CHLO)

HSP 1 Score: 112 bits (281), Expect = 1.180e-26
Identity = 62/108 (57.41%), Postives = 77/108 (71.30%), Query Frame = 1
Query:   16 QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPSVSCLA 339
            Q    G PKVLD++DCTGSGDVD S+V+K     A ADG   I+G SGR L+L+  WTNPSGEWRVGIK  Y+LF + LV RVK+ERRK WD++   A V+ +V+ LA
Sbjct:  125 QYTSQGKPKVLDVIDCTGSGDVDMSSVVK-----ADADGF--IEGASGRKLKLHTDWTNPSGEWRVGIKHVYQLFSRGLVDRVKSERRKQWDEQQRVA-VAQAVADLA 224          
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Match: A0A2N9EEH6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EEH6_FAGSY)

HSP 1 Score: 107 bits (268), Expect = 1.600e-26
Identity = 58/107 (54.21%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   16 QVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKGLSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKHLAAEVSPSVSCL 336
            QV  DG PK+LD++DCTGSGDVDTS V+K     A ADG   I+G SG +L +N  W NPSGEWRVG K  YELF   L +R+K ER+K WD+K+   E++ +V  L
Sbjct:   71 QVTSDGKPKILDVIDCTGSGDVDTSKVVK-----ADADGC--IRGASGASLVVNSSWENPSGEWRVGYKLVYELFTGTLTSRLKRERKKKWDEKN-QEEIAKAVKHL 169          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12268.1901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMK5_ECTSI2.600e-5696.04Similar to tripeptidylpeptidase II n=2 Tax=Ectocar... [more]
A0A7S2HF30_9STRA1.240e-3361.17Subtilisin (Fragment) n=1 Tax=Dictyocha speculum T... [more]
A0A7R9V402_9CHLO3.980e-2951.85Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A836CLL6_9STRA8.170e-2959.41Subtilase family-domain-containing protein n=1 Tax... [more]
A0A1X2IXE8_9FUNG1.330e-2751.38Tripeptidyl-peptidase II n=1 Tax=Absidia repens Ta... [more]
A0A1Y1IEG1_KLENI2.490e-2762.77Tripeptidyl-peptidase II n=1 Tax=Klebsormidium nit... [more]
D8R7G9_SELML1.170e-2659.18Tripeptidyl-peptidase II n=4 Tax=Selaginella moell... [more]
A0A5N6LVC8_9ASTR1.180e-2660.00Tripeptidyl-peptidase II n=1 Tax=Mikania micrantha... [more]
A0A250XIK6_9CHLO1.180e-2657.41Tripeptidyl-peptidase II n=1 Tax=Chlamydomonas eus... [more]
A0A2N9EEH6_FAGSY1.600e-2654.21Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12268contigEcto-sp13_S_contig12268:341..1202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score198.4
Seed ortholog evalue1.8e-48
Seed eggNOG ortholog2880.D8LMK5
Preferred nameTPP2
Model size339
KEGG koko:K01280
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004175,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008240,GO:0009507,GO:0009536,GO:0009987,GO:0010883,GO:0010884,GO:0016020,GO:0016043,GO:0016567,GO:0016604,GO:0016787,GO:0017171,GO:0019538,GO:0022607,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032446,GO:0032879,GO:0032991,GO:0033218,GO:0036211,GO:0042277,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0048518,GO:0050789,GO:0051259,GO:0051260,GO:0065003,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1905952,GO:1905954,GO:1990904
Exons2
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
EC3.4.14.10
Cds size339
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.178186-CDS-Ecto-sp13_S_contig12268:340..5181681462652.178186-CDS-Ecto-sp13_S_contig12268:340..518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12268 341..518 -
1681462652.188601-CDS-Ecto-sp13_S_contig12268:1041..12021681462652.188601-CDS-Ecto-sp13_S_contig12268:1041..1202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12268 1042..1202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12268.1901.1prot_Ecto-sp13_S_contig12268.1901.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12268 341..1202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12268.1901.1

>prot_Ecto-sp13_S_contig12268.1901.1 ID=prot_Ecto-sp13_S_contig12268.1901.1|Name=mRNA_Ecto-sp13_S_contig12268.1901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MDNQRQVCPDGSPKVLDIVDCTGSGDVDTSTVLKGGSVTAAADGVREIKG
LSGRTLRLNPKWTNPSGEWRVGIKRAYELFPKLLVTRVKAERRKDWDKKH
LAAEVSPSVSCLA
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mRNA from alignment at Ecto-sp13_S_contig12268:341..1202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12268.1901.1 ID=mRNA_Ecto-sp13_S_contig12268.1901.1|Name=mRNA_Ecto-sp13_S_contig12268.1901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=862bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12268:341..1202- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAACCAACGTCAGGTGTGCCCGGACGGTAGCCCCAAGGTGCTCGA CATCGTCGACTGCACGGGATCCGGGGACGTGGATACCTCCACCGTGCTCA AGGGGGGCTCCGTGACTGCCGCTGCCGACGGCGTTCGCGAGATCAAGGGG CTCTCTGGCAGGTGCGGTGTGCGTGTGTTTGTGTTTGTGATTGTGTTGTT GGCATCGACTACGCTCAACGTAGCCTGCTGACCAATGAGAAGACGCCCGT CTCAGTGCGCGCGCGCGCGTGTGTGTTTTTTTTGTTTGTGTCGACCGCGC TGACCCGCTGGCCAATGGGAGTACGTGAGTATCTGTGTGTGTTATGTTGG CAATGGCCTCGCCAACAGGCTGACCGATGAAAATATGTCGGTCTCCATTT TTGTGTTTGTTGAGACCGATCGCGCCAACCGACTCGCCAATAAAAGTATA TCAATCTTGGTGCAGATAAACAATGAAAACGGTTCGAAAGGCCATGATCT TGAACCCCTCGAGGGGGGGTCATAGGAGAGGCTAGGCGATTCTCCGCAGT AAAGACGGAAACGCTAACACATGAGGAGAAATCCGGTTCCTGTCTACATC GATTTCAACGTGCGGCTCGTGTTCTGTTTTTATGTTTGTTGTATGGTTGT CGTTGGTGGTGCTTGCTGGTGGTGTGCGACAAAGGACCCTACGCCTCAAC CCCAAGTGGACCAACCCCAGCGGGGAATGGCGAGTGGGCATCAAGCGCGC CTACGAGCTGTTCCCGAAGCTGCTGGTGACGCGGGTCAAGGCCGAGCGGC GCAAGGATTGGGACAAGAAGCACCTCGCCGCGGAGGTGAGCCCGTCCGTG TCGTGCTTGGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12268:341..1202-

>mRNA_Ecto-sp13_S_contig12268.1901.1 ID=mRNA_Ecto-sp13_S_contig12268.1901.1|Name=mRNA_Ecto-sp13_S_contig12268.1901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12268:341..1202- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAACCAACGTCAGGTGTGCCCGGACGGTAGCCCCAAGGTGCTCGA
CATCGTCGACTGCACGGGATCCGGGGACGTGGATACCTCCACCGTGCTCA
AGGGGGGCTCCGTGACTGCCGCTGCCGACGGCGTTCGCGAGATCAAGGGG
CTCTCTGGCAGGACCCTACGCCTCAACCCCAAGTGGACCAACCCCAGCGG
GGAATGGCGAGTGGGCATCAAGCGCGCCTACGAGCTGTTCCCGAAGCTGC
TGGTGACGCGGGTCAAGGCCGAGCGGCGCAAGGATTGGGACAAGAAGCAC
CTCGCCGCGGAGGTGAGCCCGTCCGTGTCGTGCTTGGCT
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