mRNA_Ecto-sp13_S_contig7763.19009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7763.19009.1
Unique NamemRNA_Ecto-sp13_S_contig7763.19009.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7763.19009.1 vs. uniprot
Match: A0A6H5JBK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBK9_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 5.750e-70
Identity = 109/119 (91.60%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:  922 MKALGLVAVSGMIGVSTGLEGACVDLSNACREGAPWLVKTGRWSGKIPLRLRQFWPLGGEDRRTLDISPSRLIQRRMVKALTILHNDHIGEDFAWPVGVEKVNFKYCNKDLGDVKWPST 1278
            MKAL L+AVSGMIGVSTGLEG CVDLSNACREGAPWLVKTGRWS +IPLRLRQFWPLG EDRRTL ++PSRLIQRRMVKALTILHNDHIGEDFAWP+GVEKVNFKYCNKDLGDVKWPST
Sbjct:    1 MKALRLMAVSGMIGVSTGLEGTCVDLSNACREGAPWLVKTGRWSEEIPLRLRQFWPLGREDRRTLQLAPSRLIQRRMVKALTILHNDHIGEDFAWPIGVEKVNFKYCNKDLGDVKWPST 119
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BLAST of mRNA_Ecto-sp13_S_contig7763.19009.1 vs. uniprot
Match: D8LHY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY5_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 8.240e-67
Identity = 109/119 (91.60%), Postives = 112/119 (94.12%), Query Frame = 1 
Query:  922 MKALGLVAVSGMIGVSTGLEGACVDLSNACREGAPWLVKTGRWSGKIPLRLRQFWPLGGEDRRTLDISPSRLIQRRMVKALTILHNDHIGEDFAWPVGVEKVNFKYCNKDLGDVKWPST 1278
            MKALGLVAVSGMI VSTGLEG CVDLSNACREGAPWLVKTGRWS KIPLRLRQFWPLG EDRRTL ++PSRLIQRRMVKALTILHNDHIGEDFAWPVGVEKVNFKY  KDLGDVKWP+T
Sbjct:    1 MKALGLVAVSGMISVSTGLEGTCVDLSNACREGAPWLVKTGRWSDKIPLRLRQFWPLGREDRRTLQLAPSRLIQRRMVKALTILHNDHIGEDFAWPVGVEKVNFKY--KDLGDVKWPTT 117
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BLAST of mRNA_Ecto-sp13_S_contig7763.19009.1 vs. uniprot
Match: A0A6H5JGK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK9_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 7.780e-21
Identity = 46/53 (86.79%), Postives = 46/53 (86.79%), Query Frame = -2 
Query:  501 MRQSCQDRGPKXXXXXEIQTRFPPPIPLSRALPCCCQAAGPLLAAASTGAWWA 659
            MR S QDRGPK     EIQTRFPPPIPLSRALPCCCQAAGPLLAAASTGAWWA
Sbjct:    1 MRLSLQDRGPKPPPPPEIQTRFPPPIPLSRALPCCCQAAGPLLAAASTGAWWA 53
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7763.19009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JBK9_9PHAE5.750e-7091.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHY5_ECTSI8.240e-6791.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGK9_9PHAE7.780e-2186.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7763contigEcto-sp13_S_contig7763:5305..7286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1278
Hectar predicted targeting categoryother localisation
Exons2
Cds size1278
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.812985-CDS-Ecto-sp13_S_contig7763:5304..60471681464046.812985-CDS-Ecto-sp13_S_contig7763:5304..6047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7763 5305..6047 +
1681464046.8262436-CDS-Ecto-sp13_S_contig7763:6751..72861681464046.8262436-CDS-Ecto-sp13_S_contig7763:6751..7286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7763 6752..7286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7763.19009.1prot_Ecto-sp13_S_contig7763.19009.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7763 5305..7286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7763.19009.1

>prot_Ecto-sp13_S_contig7763.19009.1 ID=prot_Ecto-sp13_S_contig7763.19009.1|Name=mRNA_Ecto-sp13_S_contig7763.19009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=426bp
MDPTQHHQHQYGQQPAHGACWPPPPPQPAAGAPSRYVFSSGVHKQSLGNR
WQHQPQQQQQQHQQQQPQPQPQQQQYQHLDSHAPPRHFGNHHQQASWQIL
GHQPPRPYTAGGGSSGSRSYLEPSVLQRSTLHQHHHQQQVEASTQATVPN
AGQLLAGSPMSVDCRPHAHQAPVLAAANRGPAAWQQHGNARERGMGGGNR
VWISGGGGGLGPRSWHDWRMEGGAGGGHGGERATATPNPKLRQAQQSYKW
APKGGTNRSATKIIHHLPQQQQQQQTRKQGRRARQRHAKAWRPQPPPPCG
PPATAECMKALGLVAVSGMIGVSTGLEGACVDLSNACREGAPWLVKTGRW
SGKIPLRLRQFWPLGGEDRRTLDISPSRLIQRRMVKALTILHNDHIGEDF
AWPVGVEKVNFKYCNKDLGDVKWPST
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mRNA from alignment at Ecto-sp13_S_contig7763:5305..7286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7763.19009.1 ID=mRNA_Ecto-sp13_S_contig7763.19009.1|Name=mRNA_Ecto-sp13_S_contig7763.19009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1982bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7763:5305..7286+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCCAACGCAACATCACCAACATCAATATGGGCAACAACCGGCGCA
TGGAGCGTGTTGGCCGCCCCCGCCACCGCAGCCAGCGGCAGGGGCTCCTT
CACGGTACGTCTTTTCTTCTGGAGTTCACAAACAGTCACTTGGGAACAGG
TGGCAGCATCAGCCGCAGCAGCAGCAGCAGCAGCATCAGCAGCAGCAGCC
GCAGCCGCAGCCGCAGCAGCAGCAGTATCAACACCTTGATTCCCATGCTC
CGCCGCGCCATTTCGGCAATCATCATCAGCAGGCCTCCTGGCAAATCCTT
GGCCACCAGCCCCCGCGCCCGTACACCGCAGGAGGAGGATCGTCCGGGTC
CCGCTCCTATCTCGAGCCGAGCGTGCTTCAGCGAAGTACGTTGCACCAAC
ACCATCACCAACAACAAGTGGAAGCCTCTACCCAGGCAACTGTTCCGAAT
GCGGGGCAACTACTTGCTGGATCCCCAATGTCGGTGGATTGCCGTCCTCA
TGCCCACCAAGCACCGGTGCTAGCCGCAGCCAACAGAGGACCGGCGGCCT
GGCAGCAGCACGGCAATGCCCGGGAAAGAGGGATGGGGGGCGGAAACCGA
GTCTGGATTTCAGGCGGAGGCGGGGGCTTAGGTCCGCGATCCTGGCATGA
CTGGCGCATGGAAGGTGGAGCAGGAGGAGGACATGGCGGCGAAAGAGCGA
CAGCAACACCAAATCCGAAACTGAGGCAAGCGCAACAAAGTTAGTTGCAA
GTGTCTAAATGTTTATTGTGTGTATGTCAAGAGCTTTGCGGCAGATTTTT
GCGTTGGTCGAAGATGGTTGGCACCACTCCCATGCGTTCCATCGTGTTGT
TGTGGCTTGTTGTTTTTCAGCTGTGAGCACACCGGCTCCTTTTTGTTGTT
TTCATTTCTTTATCAGCGCTCACAGCATTTCTACCTACAACAGTAGGTCC
AATCCATAATCACACAGAACGAATCTTCTCCCCTCGATTTTTAGTGCGAG
AAGAGTGCATCTTGAATCCCTCCGAAGTTTGAACTTCTGTTTGTTGTGCA
CGTCCAGAACGGCGGCGCAACGTATGGAGATAGAGTCAACTTGGGCCGAG
GCTCAATTGAGCCGTCATCGTTACCGTCGAGCACAGGATATGAATAGAGT
GAGTGTCGGGTCCGCCGCCGCCGGGCTGTGTGTCTCGATTCTTTTTTGTC
GTGAATATTTCAGCGTCTTGTTGCTGTTGTTACTGTTGTTATTGTCTTCA
CAGTACAAAGCGTCTCTTTCTCGACGTAATCTTTCGAATATGGCGGGACG
TTCTTTGTGCGAAAGTTAACACCCCGAGTGCCGCATCTTGACTACGCGGA
GGACACGAACGTAGGGTTCGTCACAGAGACCCCGAGCTTGGTATTGATCA
GTTGGAACTAACCTGCAGCCCGACACACCCAAAATCGCCGACAGCAGCAA
GTGGGCTCCGAAAGGGGGAACAAACCGTTCCGCCACGAAAATAATCCACC
ACCTGCCGCAGCAACAGCAGCAGCAGCAGACTCGGAAACAAGGCAGGCGC
GCCAGACAACGACATGCAAAAGCTTGGCGCCCTCAGCCCCCGCCCCCCTG
TGGTCCGCCTGCCACTGCTGAGTGCATGAAGGCTCTGGGGCTCGTGGCCG
TGTCCGGGATGATCGGTGTGAGCACGGGCCTGGAGGGGGCGTGTGTAGAC
CTGAGCAACGCTTGTCGGGAGGGGGCACCGTGGTTAGTCAAGACAGGGCG
TTGGTCGGGGAAGATTCCCCTTAGGTTGCGGCAGTTTTGGCCTCTCGGCG
GGGAAGACCGGCGTACGCTGGACATCTCGCCGAGCCGGCTGATACAGCGC
AGGATGGTGAAAGCCCTTACGATTTTGCACAACGACCACATCGGAGAAGA
TTTCGCCTGGCCGGTTGGGGTGGAAAAGGTGAACTTTAAATACTGTAACA
AGGACCTCGGAGATGTCAAGTGGCCATCGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7763:5305..7286+

>mRNA_Ecto-sp13_S_contig7763.19009.1 ID=mRNA_Ecto-sp13_S_contig7763.19009.1|Name=mRNA_Ecto-sp13_S_contig7763.19009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1278bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7763:5305..7286+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCCAACGCAACATCACCAACATCAATATGGGCAACAACCGGCGCA
TGGAGCGTGTTGGCCGCCCCCGCCACCGCAGCCAGCGGCAGGGGCTCCTT
CACGGTACGTCTTTTCTTCTGGAGTTCACAAACAGTCACTTGGGAACAGG
TGGCAGCATCAGCCGCAGCAGCAGCAGCAGCAGCATCAGCAGCAGCAGCC
GCAGCCGCAGCCGCAGCAGCAGCAGTATCAACACCTTGATTCCCATGCTC
CGCCGCGCCATTTCGGCAATCATCATCAGCAGGCCTCCTGGCAAATCCTT
GGCCACCAGCCCCCGCGCCCGTACACCGCAGGAGGAGGATCGTCCGGGTC
CCGCTCCTATCTCGAGCCGAGCGTGCTTCAGCGAAGTACGTTGCACCAAC
ACCATCACCAACAACAAGTGGAAGCCTCTACCCAGGCAACTGTTCCGAAT
GCGGGGCAACTACTTGCTGGATCCCCAATGTCGGTGGATTGCCGTCCTCA
TGCCCACCAAGCACCGGTGCTAGCCGCAGCCAACAGAGGACCGGCGGCCT
GGCAGCAGCACGGCAATGCCCGGGAAAGAGGGATGGGGGGCGGAAACCGA
GTCTGGATTTCAGGCGGAGGCGGGGGCTTAGGTCCGCGATCCTGGCATGA
CTGGCGCATGGAAGGTGGAGCAGGAGGAGGACATGGCGGCGAAAGAGCGA
CAGCAACACCAAATCCGAAACTGAGGCAAGCGCAACAAAGTTACAAGTGG
GCTCCGAAAGGGGGAACAAACCGTTCCGCCACGAAAATAATCCACCACCT
GCCGCAGCAACAGCAGCAGCAGCAGACTCGGAAACAAGGCAGGCGCGCCA
GACAACGACATGCAAAAGCTTGGCGCCCTCAGCCCCCGCCCCCCTGTGGT
CCGCCTGCCACTGCTGAGTGCATGAAGGCTCTGGGGCTCGTGGCCGTGTC
CGGGATGATCGGTGTGAGCACGGGCCTGGAGGGGGCGTGTGTAGACCTGA
GCAACGCTTGTCGGGAGGGGGCACCGTGGTTAGTCAAGACAGGGCGTTGG
TCGGGGAAGATTCCCCTTAGGTTGCGGCAGTTTTGGCCTCTCGGCGGGGA
AGACCGGCGTACGCTGGACATCTCGCCGAGCCGGCTGATACAGCGCAGGA
TGGTGAAAGCCCTTACGATTTTGCACAACGACCACATCGGAGAAGATTTC
GCCTGGCCGGTTGGGGTGGAAAAGGTGAACTTTAAATACTGTAACAAGGA
CCTCGGAGATGTCAAGTGGCCATCGACC
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