prot_Ecto-sp13_S_contig7763.19007.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7763.19007.1
Unique Nameprot_Ecto-sp13_S_contig7763.19007.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length73
Homology
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: D8LHY4_ECTSI (Geranyl-diphosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY4_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.960e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 0
Query:    1 MSQACNSNSRQVPPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            MSQACNSNS+QV PDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG
Sbjct:  234 MSQACNSNSQQVRPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 306          
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A7S2B533_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B533_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.130e-19
Identity = 47/59 (79.66%), Postives = 49/59 (83.05%), Query Frame = 0
Query:   15 DVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            DV PG   V P Q RLAEITEMIH ASLFHDDVID+ADTRRGVPSVN+ FGNKLAIL G
Sbjct:  163 DVTPG---VLPSQRRLAEITEMIHTASLFHDDVIDKADTRRGVPSVNRAFGNKLAILGG 218          
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: W7TXB8_9STRA (Decaprenyl-diphosphate synthase subunit 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXB8_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.550e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0
Query:   25 PLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            P Q RLAEITEMIH ASLFHDDVIDEAD RRGVPS+NK++GNK+AILAG
Sbjct:  223 PSQKRLAEITEMIHTASLFHDDVIDEADERRGVPSINKIYGNKMAILAG 271          
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A4D9DEU4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEU4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 8.700e-19
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 0
Query:   25 PLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            P Q RLAEITEMIH ASLFHDDVIDEAD RRGVPS+NK++GNK+AILAG
Sbjct:  203 PSQKRLAEITEMIHTASLFHDDVIDEADERRGVPSINKIYGNKMAILAG 251          
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A836CLR5_9STRA (Geranyl-diphosphate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR5_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.100e-18
Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 0
Query:    1 MSQACNSNSRQVPPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            MS+ACN++         P        Q RLAEITEMIH ASLFHDDVID+ADTRRG PS N+ FGNKLAILAG
Sbjct:  168 MSRACNASC------APPPAPFALACQRRLAEITEMIHTASLFHDDVIDKADTRRGAPSANRAFGNKLAILAG 234          
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A7S1U6T1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6T1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.490e-18
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 0
Query:   23 VNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            ++  Q RLAEITEMIH ASLFHDDVID+ADTRRG PSVN+VFGNK+AILAG
Sbjct:  164 IDDRQRRLAEITEMIHTASLFHDDVIDKADTRRGEPSVNRVFGNKMAILAG 214          
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A5A8D8X2_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D8X2_CAFRO)

HSP 1 Score: 87.0 bits (214), Expect = 2.230e-18
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0
Query:   19 GTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            G E V   QLRLAEITE+IH ASL HDDVIDEADTRRGV SVN VFGNKLA+LAG
Sbjct:  201 GAEDVAASQLRLAEITELIHTASLLHDDVIDEADTRRGVASVNSVFGNKLAVLAG 255          
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A812WGK8_9DINO (DNA helicase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WGK8_9DINO)

HSP 1 Score: 87.0 bits (214), Expect = 2.610e-18
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0
Query:   19 GTELVNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            G E V   QLRLAEITE+IH ASL HDDVIDEADTRRGV SVN VFGNKLA+LAG
Sbjct: 1029 GAEDVAASQLRLAEITELIHTASLLHDDVIDEADTRRGVASVNSVFGNKLAVLAG 1083          
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A8K1CPQ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPQ7_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 5.000e-18
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
Query:   27 QLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            Q RLAEITEMIH ASL HDDVIDEADTRRGVPSVNKVFG+KL+ILAG
Sbjct:  168 QQRLAEITEMIHTASLLHDDVIDEADTRRGVPSVNKVFGDKLSILAG 214          
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Match: A0A7S1U4D1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4D1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.340e-18
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 0
Query:   23 VNPLQLRLAEITEMIHAASLFHDDVIDEADTRRGVPSVNKVFGNKLAILAG 73
            ++  Q RLAEITEMIH ASLFHDDVID+ADTRRG PSVN+VFGNK+AILAG
Sbjct:  164 IDDRQRRLAEITEMIHTASLFHDDVIDKADTRRGEPSVNRVFGNKMAILAG 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7763.19007.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHY4_ECTSI2.960e-3897.26Geranyl-diphosphate synthase n=2 Tax=Ectocarpus Ta... [more]
A0A7S2B533_9STRA1.130e-1979.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TXB8_9STRA8.550e-1983.67Decaprenyl-diphosphate synthase subunit 1 n=1 Tax=... [more]
A0A4D9DEU4_9STRA8.700e-1983.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A836CLR5_9STRA1.100e-1863.01Geranyl-diphosphate synthase n=1 Tax=Tribonema min... [more]
A0A7S1U6T1_9STRA1.490e-1880.39Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A5A8D8X2_CAFRO2.230e-1880.00Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A812WGK8_9DINO2.610e-1880.00DNA helicase n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A8K1CPQ7_PYTOL5.000e-1889.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1U4D1_9STRA5.340e-1880.39Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008949Isoprenoid synthase domain superfamilyGENE3D1.10.600.10coord: 1..73
e-value: 1.9E-24
score: 88.3
IPR008949Isoprenoid synthase domain superfamilySUPERFAMILY48576Terpenoid synthasescoord: 25..73
IPR000092Polyprenyl synthetasePFAMPF00348polyprenyl_syntcoord: 25..73
e-value: 2.0E-19
score: 69.6
NoneNo IPR availablePANTHERPTHR12001GERANYLGERANYL PYROPHOSPHATE SYNTHASEcoord: 1..73
NoneNo IPR availablePANTHERPTHR12001:SF47DECAPRENYL-DIPHOSPHATE SYNTHASE SUBUNIT 1coord: 1..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7763contigEcto-sp13_S_contig7763:420..1071 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7763.19007.1mRNA_Ecto-sp13_S_contig7763.19007.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7763 420..1080 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7763.19007.1 ID=prot_Ecto-sp13_S_contig7763.19007.1|Name=mRNA_Ecto-sp13_S_contig7763.19007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MSQACNSNSRQVPPDVQPGTELVNPLQLRLAEITEMIHAASLFHDDVIDE
ADTRRGVPSVNKVFGNKLAILAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008949Isoprenoid_synthase_dom_sf
IPR000092Polyprenyl_synt