mRNA_Ecto-sp13_S_contig77620.19006.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77620.19006.1
Unique NamemRNA_Ecto-sp13_S_contig77620.19006.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77620.19006.1 vs. uniprot
Match: D8LTI7_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 3.340e-56
Identity = 101/104 (97.12%), Postives = 102/104 (98.08%), Query Frame = 1 
Query:    1 QETFPYTHGNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRTVTLDRLELTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDEHASALLGTVN 312
            QETFPYT+GNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRTVTLDRL LTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVD HASALLGTVN
Sbjct:  942 QETFPYTYGNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRTVTLDRLGLTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDGHASALLGTVN 1045
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BLAST of mRNA_Ecto-sp13_S_contig77620.19006.1 vs. uniprot
Match: A0A835YIM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM8_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.630e-29
Identity = 61/102 (59.80%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 QETFPYTHGNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRTVTLDRLELTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDEHASALLGT 306
            QETFPY  G GTADA VV+G V +GFS+KRG +    G+EGPLLV+S+RT+T++ L ++VAN R+AWL+NLL  LFS TI  YVCRSL++ +D++AS LL T
Sbjct:  918 QETFPYGSGTGTADAMVVNGSVRIGFSLKRGTLG---GVEGPLLVMSSRTITMEALTVSVANTRLAWLLNLLVSLFSETIKEYVCRSLKDTLDKNASELLRT 1016
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BLAST of mRNA_Ecto-sp13_S_contig77620.19006.1 vs. uniprot
Match: A0A813HX46_POLGL (Hypothetical protein (Fragment) n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HX46_POLGL)

HSP 1 Score: 60.5 bits (145), Expect = 1.930e-8
Identity = 34/104 (32.69%), Postives = 57/104 (54.81%), Query Frame = 1 
Query:    1 QETFPYTHGNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRTVTLDRLELTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDEHASALLGTVN 312
            QE FP+   +  ADA      V   F +K G+  ++     P LV+S+R+V +D LEL V     A ++N L+ LF+  + +Y C+ + +Q+DE    L+ ++N
Sbjct:  922 QEFFPFLTADCIADAKAERMSVGFAFKLKPGVNGKQ-----PELVMSSRSVHMDHLELWVGETNYAVVVNALSFLFADVLKSYACQKIADQLDEQMEVLVASLN 1020
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BLAST of mRNA_Ecto-sp13_S_contig77620.19006.1 vs. uniprot
Match: A0A7S1R939_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R939_ALECA)

HSP 1 Score: 60.1 bits (144), Expect = 2.530e-8
Identity = 37/116 (31.90%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:    1 QETFPYTHGNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRTVTLDRLEL------------TVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDEHASALLGTVN 312
            Q  FP+  G+G ADA      VS GF +  G     +    P+LV+S+R V+++ LEL             VA   +A +IN L+ LF++ +  Y C+ +   +D H  +L+G +N
Sbjct:  390 QTGFPFIEGSGVADAKAERMRVSFGFKLAPGPSSEGR----PVLVMSSRAVSMENLELWVSADKDAEIGQMVAQSSLAMIINPLSYLFANVLKDYACQKIASHLDNHLGSLVGALN 501
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77620.19006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LTI7_ECTSI3.340e-5697.12Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YIM8_9STRA1.630e-2959.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A813HX46_POLGL1.930e-832.69Hypothetical protein (Fragment) n=2 Tax=Polarella ... [more]
A0A7S1R939_ALECA2.530e-831.90Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77620contigEcto-sp13_S_contig77620:5..513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score197.2
Seed ortholog evalue3.8e-48
Seed eggNOG ortholog2880.D8LTI7
Model size312
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28JPJ@1,2QS2W@2759
Cds size312
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.6302507-CDS-Ecto-sp13_S_contig77620:4..1841681464046.6302507-CDS-Ecto-sp13_S_contig77620:4..184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77620 5..184 -
1681464046.6422086-CDS-Ecto-sp13_S_contig77620:381..5131681464046.6422086-CDS-Ecto-sp13_S_contig77620:381..513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77620 382..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77620.19006.1prot_Ecto-sp13_S_contig77620.19006.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77620 5..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77620.19006.1

>prot_Ecto-sp13_S_contig77620.19006.1 ID=prot_Ecto-sp13_S_contig77620.19006.1|Name=mRNA_Ecto-sp13_S_contig77620.19006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
QETFPYTHGNGTADATVVDGYVSLGFSIKRGIVDREKGIEGPLLVLSTRT
VTLDRLELTVANCRMAWLINLLTRLFSSTISTYVCRSLQEQVDEHASALL
GTVN
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mRNA from alignment at Ecto-sp13_S_contig77620:5..513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77620.19006.1 ID=mRNA_Ecto-sp13_S_contig77620.19006.1|Name=mRNA_Ecto-sp13_S_contig77620.19006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=509bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77620:5..513- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAACCTTCCCGTACACGCACGGCAACGGCACCGCTGACGCTACAGT
CGTGGACGGTTACGTTTCTCTCGGATTTTCGATCAAGAGGGGCATCGTGG
ACCGGGAGAAGGGCATCGAGGGTCCCCTGTTGGTGAGACGCGGGGCCTCT
TGGTTTGTTGTTGTGGGAAGGAACATGAGAGGCAAGCTGGCTCGTGTTAG
TAGGTGTTGATTGGTTCAATCCCGTCCCACCTCAGTTGGGTATGCATACA
AGATCGCTTTGCTTTCGCGCATGACGTATGTACGTCTCTCTCTTGTTTCT
TGTCTCTTTCCTTTGCCGGATCCCCTAAGGTGTTGTCCACGCGGACGGTT
ACCTTGGATCGTCTGGAGCTTACCGTTGCCAACTGTCGCATGGCTTGGCT
CATCAACCTTCTGACCAGACTCTTCTCGAGCACCATCAGCACGTACGTCT
GCCGGTCGCTGCAGGAGCAGGTCGACGAACATGCCTCAGCCCTCCTCGGC
ACGGTGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77620:5..513-

>mRNA_Ecto-sp13_S_contig77620.19006.1 ID=mRNA_Ecto-sp13_S_contig77620.19006.1|Name=mRNA_Ecto-sp13_S_contig77620.19006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77620:5..513- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAACCTTCCCGTACACGCACGGCAACGGCACCGCTGACGCTACAGT
CGTGGACGGTTACGTTTCTCTCGGATTTTCGATCAAGAGGGGCATCGTGG
ACCGGGAGAAGGGCATCGAGGGTCCCCTGTTGGTGTTGTCCACGCGGACG
GTTACCTTGGATCGTCTGGAGCTTACCGTTGCCAACTGTCGCATGGCTTG
GCTCATCAACCTTCTGACCAGACTCTTCTCGAGCACCATCAGCACGTACG
TCTGCCGGTCGCTGCAGGAGCAGGTCGACGAACATGCCTCAGCCCTCCTC
GGCACGGTGAAC
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