mRNA_Ecto-sp13_S_contig77610.19004.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77610.19004.1
Unique NamemRNA_Ecto-sp13_S_contig77610.19004.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77610.19004.1 vs. uniprot
Match: A0A6H5J904_9PHAE (Polyketide_cyc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J904_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.890e-22
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 VYGSEVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLPYV 129
            VYGSEVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLPYV
Sbjct:  139 VYGSEVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLPYV 181
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BLAST of mRNA_Ecto-sp13_S_contig77610.19004.1 vs. uniprot
Match: D8LS08_ECTSI (Polyketide_cyc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS08_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 3.710e-19
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 VYGSEVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLP 123
            VYGSEVAWESTTGLSNRGRVTFDDKG  RCLMTLTLSYNLP
Sbjct:  123 VYGSEVAWESTTGLSNRGRVTFDDKGGERCLMTLTLSYNLP 163
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BLAST of mRNA_Ecto-sp13_S_contig77610.19004.1 vs. uniprot
Match: A0A5J4Z354_PORPP (Polyketide_cyc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z354_PORPP)

HSP 1 Score: 49.3 bits (116), Expect = 1.030e-5
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:   16 VAWESTTGLSNRGRVTFDDKGDGRCL-MTLTLSYNLP 123
            + WES TGLSNRG+VTF D  DG    MTLT+S+N+P
Sbjct:  113 IQWESVTGLSNRGKVTFADADDGASTNMTLTVSFNVP 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77610.19004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J904_9PHAE9.890e-22100.00Polyketide_cyc domain-containing protein n=1 Tax=E... [more]
D8LS08_ECTSI3.710e-1995.12Polyketide_cyc domain-containing protein n=1 Tax=E... [more]
A0A5J4Z354_PORPP1.030e-562.16Polyketide_cyc domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77610contigEcto-sp13_S_contig77610:195..329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score83.6
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2880.D8LS08
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Polyketide cyclase / dehydrase and lipid transport
EggNOG OGs2QSDH@2759,COG5637@1
Cds size135
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.5462406-CDS-Ecto-sp13_S_contig77610:194..3291681464046.5462406-CDS-Ecto-sp13_S_contig77610:194..329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77610 195..329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77610.19004.1prot_Ecto-sp13_S_contig77610.19004.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77610 195..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77610.19004.1

>prot_Ecto-sp13_S_contig77610.19004.1 ID=prot_Ecto-sp13_S_contig77610.19004.1|Name=mRNA_Ecto-sp13_S_contig77610.19004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
VYGSEVAWESTTGLSNRGRVTFDDKGDGRCLMTLTLSYNLPYVSR
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mRNA from alignment at Ecto-sp13_S_contig77610:195..329+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77610.19004.1 ID=mRNA_Ecto-sp13_S_contig77610.19004.1|Name=mRNA_Ecto-sp13_S_contig77610.19004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77610:195..329+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTACGGGTCGGAGGTGGCGTGGGAGAGCACGACGGGCCTCAGCAACCG
GGGTCGAGTGACGTTCGATGACAAGGGGGACGGGCGATGCCTCATGACGC
TGACGCTGTCGTACAACCTGCCGTACGTAAGTCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77610:195..329+

>mRNA_Ecto-sp13_S_contig77610.19004.1 ID=mRNA_Ecto-sp13_S_contig77610.19004.1|Name=mRNA_Ecto-sp13_S_contig77610.19004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77610:195..329+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTACGGGTCGGAGGTGGCGTGGGAGAGCACGACGGGCCTCAGCAACCG
GGGTCGAGTGACGTTCGATGACAAGGGGGACGGGCGATGCCTCATGACGC
TGACGCTGTCGTACAACCTGCCGTACGTAAGTCGT
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