mRNA_Ecto-sp13_S_contig7761.19002.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7761.19002.1
Unique NamemRNA_Ecto-sp13_S_contig7761.19002.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7761.19002.1 vs. uniprot
Match: A0A6H5J671_9PHAE (Adenylosuccinate lyase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J671_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.870e-5
Identity = 23/26 (88.46%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:  322 MAGWLAMTGAEVLLLGYHSVFDVRSR 399
            MAGWLA+TGAEVLLLGYHSV D RSR
Sbjct:    1 MAGWLAVTGAEVLLLGYHSVLDARSR 26
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7761.19002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J671_9PHAE5.870e-588.46Adenylosuccinate lyase n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7761contigEcto-sp13_S_contig7761:3009..3408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size400
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_002060.1
Cds size258
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.421-UTR-Ecto-sp13_S_contig7761:3008..30321681464046.421-UTR-Ecto-sp13_S_contig7761:3008..3032Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7761 3009..3032 +
1681464046.4512012-UTR-Ecto-sp13_S_contig7761:3290..34081681464046.4512012-UTR-Ecto-sp13_S_contig7761:3290..3408Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7761 3291..3408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.4397454-CDS-Ecto-sp13_S_contig7761:3032..32901681464046.4397454-CDS-Ecto-sp13_S_contig7761:3032..3290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7761 3033..3290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7761.19002.1prot_Ecto-sp13_S_contig7761.19002.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7761 3033..3290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7761.19002.1

>prot_Ecto-sp13_S_contig7761.19002.1 ID=prot_Ecto-sp13_S_contig7761.19002.1|Name=mRNA_Ecto-sp13_S_contig7761.19002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MPFVRLVPLALLLPFFQLAASLEKIEAVDAGEARDTLPWRWLLLLRSPSP
AVAVSNPAVAAPGTFDFLCPPETSPSPSVLSLSLT*
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mRNA from alignment at Ecto-sp13_S_contig7761:3009..3408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7761.19002.1 ID=mRNA_Ecto-sp13_S_contig7761.19002.1|Name=mRNA_Ecto-sp13_S_contig7761.19002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7761:3009..3408+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGTTTGTTGTCGCGACGGTGTGTTATGCCGTTCGTCCGCCTGGTGCCCCT
GGCACTGTTGCTCCCCTTCTTCCAGCTGGCAGCCAGTCTTGAGAAGATAG
AAGCCGTCGACGCCGGAGAAGCAAGAGATACCCTGCCGTGGCGGTGGCTC
CTGTTGTTGCGCTCTCCCTCGCCTGCTGTGGCTGTCTCAAATCCGGCCGT
TGCTGCTCCTGGCACTTTCGATTTTCTCTGCCCGCCAGAGACATCGCCTT
CTCCGTCCGTGCTCTCACTCTCGCTCACGTAGCGCTCGTAGCCGGCCGTA
GGTGTATCTGGAGCGTGGTCCATGGCTGGTTGGTTAGCTATGACGGGCGC
GGAGGTGCTGCTACTTGGCTATCACTCTGTGTTTGACGTACGTTCACGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7761:3009..3408+

>mRNA_Ecto-sp13_S_contig7761.19002.1 ID=mRNA_Ecto-sp13_S_contig7761.19002.1|Name=mRNA_Ecto-sp13_S_contig7761.19002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7761:3009..3408+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTTCGTCCGCCTGGTGCCCCTGGCACTGTTGCTCCCCTTCTTCCA
GCTGGCAGCCAGTCTTGAGAAGATAGAAGCCGTCGACGCCGGAGAAGCAA
GAGATACCCTGCCGTGGCGGTGGCTCCTGTTGTTGCGCTCTCCCTCGCCT
GCTGTGGCTGTCTCAAATCCGGCCGTTGCTGCTCCTGGCACTTTCGATTT
TCTCTGCCCGCCAGAGACATCGCCTTCTCCGTCCGTGCTCTCACTCTCGC
TCACGTAG
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