mRNA_Ecto-sp13_S_contig7761.19001.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7761.19001.1
Unique NamemRNA_Ecto-sp13_S_contig7761.19001.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7761.19001.1 vs. uniprot
Match: D8LG39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG39_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 1.890e-78
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 1 
Query:    1 MWRDIQEGSLRGGDCGEGSGRGFSGESGSRTTAAAANAGVGVVRDALAAGVSSVGKSSSGLKGLKTSLLKEDGDTIPPKTLASDAGASPAAGNKKRGLWDEAAAGDLAALAAALTPGGEGDVHACNGDGWTALHSAAHAGHGL 429
            MWRDIQEGSLRGGD GEGSGRGFSGESGSR TA+AANAGVGVVRDALAAGVSSVGKSSSGLKGLKTSLLKEDGDTIPP+TLASDAGASPAAGNK RGLWDEAAAGDLAALAAALTPGGEGDVHACNGDGWTALHSAAHAGHGL
Sbjct:    1 MWRDIQEGSLRGGDYGEGSGRGFSGESGSRATASAANAGVGVVRDALAAGVSSVGKSSSGLKGLKTSLLKEDGDTIPPRTLASDAGASPAAGNKGRGLWDEAAAGDLAALAAALTPGGEGDVHACNGDGWTALHSAAHAGHGL 143
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7761.19001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG39_ECTSI1.890e-7896.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7761contigEcto-sp13_S_contig7761:174..2938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score258.8
Seed ortholog evalue1.5e-66
Seed eggNOG ortholog2880.D8LG39
Model size431
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-11_002050.1
Cds size429
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.3449385-CDS-Ecto-sp13_S_contig7761:173..2171681464046.3449385-CDS-Ecto-sp13_S_contig7761:173..217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7761 174..217 -
1681464046.3580751-CDS-Ecto-sp13_S_contig7761:349..5461681464046.3580751-CDS-Ecto-sp13_S_contig7761:349..546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7761 350..546 -
1681464046.3687727-CDS-Ecto-sp13_S_contig7761:1162..12611681464046.3687727-CDS-Ecto-sp13_S_contig7761:1162..1261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7761 1163..1261 -
1681464046.3799798-CDS-Ecto-sp13_S_contig7761:2849..29381681464046.3799798-CDS-Ecto-sp13_S_contig7761:2849..2938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7761 2850..2938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7761.19001.1prot_Ecto-sp13_S_contig7761.19001.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7761 174..2938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7761.19001.1

>prot_Ecto-sp13_S_contig7761.19001.1 ID=prot_Ecto-sp13_S_contig7761.19001.1|Name=mRNA_Ecto-sp13_S_contig7761.19001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MWRDIQEGSLRGGDCGEGSGRGFSGESGSRTTAAAANAGVGVVRDALAAG
VSSVGKSSSGLKGLKTSLLKEDGDTIPPKTLASDAGASPAAGNKKRGLWD
EAAAGDLAALAAALTPGGEGDVHACNGDGWTALHSAAHAGHGL
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mRNA from alignment at Ecto-sp13_S_contig7761:174..2938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7761.19001.1 ID=mRNA_Ecto-sp13_S_contig7761.19001.1|Name=mRNA_Ecto-sp13_S_contig7761.19001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7761:174..2938- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGAGAGACATACAAGAAGGGAGCCTTCGAGGCGGGGATTGCGGGGA
GGGGTCGGGTCGAGGGTTCAGCGGGGAGAGTGGAAGCAGGTGAGCGCGCG
TTCAAGGGGGTGCAAAGGTGTACGGTGTGCTAAGGTGTCTACGGCAGTAG
GTTTTGTTGTCATGGCCCCATCCGTTCCGTTCCCTCCGCGGACAAACCAC
GACGTCCCCTGAGGAATAAGCTCTTGTGCCTTGTGGCTCAGGCCCATGTA
GGTGTGCACATGCAACGGCTGTGTGCATCGCGACTGCCGTGTTTACACTG
TATTGACAGCGAATAGCACGCATGGGAGTGCATGAGTGCGTGCAAAGAAA
CCGTGTTGGAGGTGACTATCACAACACAGTACAGCCTCGCATTCTGCCTT
ACGACATTTTGTACGGTACAACATCCATCCTGTGGATCCACGCAGCGAAC
TGCTATTAAACGTCACACGAAACCATGATCGCCGGTCGACGATCTTGACC
CCAAAAGCATTGTGAAGGACTGGGGAATATGATTCGAATGTCTCGTTACG
CATCTGTCCCCCCGTGGTGCAGATGCAGATGCAGGTCCTACAGACTAAAA
CAATATCGGTTGTTGTTTTTCATGACAGCCAGTGCAGATCACGTCGGTCG
TGATTGACAAAATTTCACGACAATACAGAACATATTCCAAGGATGTAGCC
TTCGCAAGGATGTTAAGCTTGGTTCTAGAAGGGAGTACGGGGTGGGGTTA
GGGATGAGGATCGGGATACGAAACCCCTCTGCCTAGCTCCGAGATTAATC
ATCTTCAATTCGTCGGGAAGCCGGTCTGGTTATTGTCACCACCCCTCTAT
TGAGAACAAAAGAATTTCTCGACACTTCCAGCTGTAGTCGGGATCCAAAA
TCTCCCCAACCCCGTGAACAACCTCTGCTAGATGCTCTATCGAGATGAAG
TACAGCGCTGAAACTCTTATGCTTGATTTATCCTTGACAAACTCCGAGGA
AGACCCTGCTCAGCGCTACGGTTTCCAAGATCATCGCTGGAGCAACCGTC
ATACATCGTGGATCCAATTTTCGCCACCCCCTTATAATGCCACCTACCAC
CTGCCCTCGTACTCCACTGCGGTTGTGGTGATGTAGCGAACATTTGTCAA
CTCTTCCCATGTGGACCGGGCTCATGATTTTGTGTGCTATGAGCTGTGCG
GCGGACGTGGAAGAAACAGCACTTTTCCTTGTGACGACACAGCGTTTCTC
CGCGTCAAAAGCGAAAAACGGCGTACATACTAATACCCACTGCGCGTGTA
GAACACGCTAGAAGCTCCCAACTTCCAGCTGCTTATGCAGGCCGCGCTCT
GTGTGAGCAGCACCAGCGCTGACCAGGGCCTTGACCAGAGAATCTCGTCG
ACAATCTTTTTAGAGAGGGCCGGCAACAAGTTCTTTAGGAGCCTTTCGAT
TGTCTGAACTTTTTTGCCACACATCACGATGCCGCCTGCACCACACGTGC
TATCCGCGTTGAAGTGTAACGGTTCGTCCTGCATTCGTCACGCTCAACGC
ACACCCTACGATAGTTCATCCCGTCATGTATAAGGCGAATTTTGGCACAT
AACCTGTCTCTTGATGGCGCGTCTACCCCCGTTGTCTTTGGTATCGTGCT
CTGTTCTTGAACCAACAACCAACAAAGGACGACCGCGGCCGCCGCTAATG
CCGGTGTGGGTGTCGTCCGCGATGCACTCGCGGCCGGAGTCTCTTCCGTG
GGGAAGTCTTCTTCCGGGCTGAAAGGGTGAGCAACTCGAAAGCATGCAGA
ATAAACCATTAAAAGGTGTGTGACCTGCAAAAAAGGTGCCAAACAAAATG
ACCCCTTGACCCTGTCTAGGGTCGCCCCCCTTGGCGTATTCTACGCGCTG
GTAGAGCCATGAGAATCGCTTGGCTGTTTTGGAACTCTCAGTTCCCGGTT
TACTTTGGCGATGGCACTGGGCAGCTGACTCAAGTACGTAGCGATGGTGG
CGATAGAGAGCCGAAGACCACGTGTCGAAGCTATGGTACCTTGAGAGAGC
TATGGTACACCCTTGTCCTCTTCGTGATGTCGTTTGGGACATCCGAGAGA
GATGGACGGACAGAGAGAGAAACTCCCAACAGATGGTGGGGGTGAATGGG
AAACGCGTTGAACGAAAGGTCCGCCAAATGTGTTTTTTGCTTTTACCCGA
TGCTGCATCCATGGGTCTTTTGGCGTAGATCTCCCCACCTGACGTACTGG
CGCAAGAGAAGCACAACTTTGCGACTCACATCCGTTTTGTTTGTTCGCTC
TGTCTCTCTCCCTCCCTCCCCCCTGCCTCCGTTTCTACCTCCCTCTCTCT
TCCCCCTCCGGGGTGCTCTTTCTTCTCTGTCTTCCCCCAAAGACTGAAAA
CATCTCTATTAAAGGAAGACGGGGACACCATTCCCCCGAAAACCCTCGCG
TCAGACGCCGGCGCCTCCCCGGCTGCCGGAAATAAGAAAAGGGGATTGTG
GGACGAAGCCGCCGCTGGGGACTTGGCGGCGCTAGCCGCTGCTCTCACGC
CAGGAGGAGAAGGAGATGTGCACGCCTGCAATGGGGACGGTGAGTGGAGG
TAGCGGGCGAGTGATTGAGGAGGGGAATTGCAGGGGGGGTTGGCAAGAAA
CAGAGTGCTTCAGCTGGAGCAGTACAAGTTTTGCTTCGTTTAACACCGCC
CGGTCCCGTGGGAAACGACAGGGTGGACGGCGCTCCACAGCGCCGCGCAC
GCGGGCCATGGGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7761:174..2938-

>mRNA_Ecto-sp13_S_contig7761.19001.1 ID=mRNA_Ecto-sp13_S_contig7761.19001.1|Name=mRNA_Ecto-sp13_S_contig7761.19001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7761:174..2938- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGAGAGACATACAAGAAGGGAGCCTTCGAGGCGGGGATTGCGGGGA
GGGGTCGGGTCGAGGGTTCAGCGGGGAGAGTGGAAGCAGGACGACCGCGG
CCGCCGCTAATGCCGGTGTGGGTGTCGTCCGCGATGCACTCGCGGCCGGA
GTCTCTTCCGTGGGGAAGTCTTCTTCCGGGCTGAAAGGACTGAAAACATC
TCTATTAAAGGAAGACGGGGACACCATTCCCCCGAAAACCCTCGCGTCAG
ACGCCGGCGCCTCCCCGGCTGCCGGAAATAAGAAAAGGGGATTGTGGGAC
GAAGCCGCCGCTGGGGACTTGGCGGCGCTAGCCGCTGCTCTCACGCCAGG
AGGAGAAGGAGATGTGCACGCCTGCAATGGGGACGGGTGGACGGCGCTCC
ACAGCGCCGCGCACGCGGGCCATGGGCTG
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