mRNA_Ecto-sp13_S_contig12265.1900.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12265.1900.1
Unique NamemRNA_Ecto-sp13_S_contig12265.1900.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: A0A5N1JA67_9BACT (DUF2905 domain-containing protein n=1 Tax=Adhaeribacter soli TaxID=2607655 RepID=A0A5N1JA67_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 5.810e-7
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 1
Query:   10 PALRWPLALVAVAIVVLGSWRYSGGKPMS----LPGDIRYESEEISVYFPWVSCILLSVFGNILL 192
            P++   L  V + I VLG   +  G  ++    LPGD+RYES  + +YFPWV+ +LLS+  ++++
Sbjct:    3 PSIGKILVFVGLGIAVLGLLFWFAGDKLNWFDRLPGDVRYESRNVRIYFPWVTMLLLSILFSLVM 67          
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: UPI00190D88E5 (DUF2905 domain-containing protein n=1 Tax=Adhaeribacter terrigena TaxID=2793070 RepID=UPI00190D88E5)

HSP 1 Score: 51.2 bits (121), Expect = 1.140e-6
Identity = 24/55 (43.64%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   28 LALVAVAIVVLGSWRYSGGKPMSLPGDIRYESEEISVYFPWVSCILLSVFGNILL 192
            LAL+ + I +LG   +  G   +LPGD+RYES+ + VYFPWV+ +LLS+  ++++
Sbjct:   15 LALLGLLIWLLGDKLHWFG---NLPGDVRYESKNVRVYFPWVTMLLLSILISVIM 66          
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: R7CS96_9FIRM (Uncharacterized protein n=2 Tax=Dialister TaxID=39948 RepID=R7CS96_9FIRM)

HSP 1 Score: 50.1 bits (118), Expect = 3.020e-6
Identity = 22/58 (37.93%), Postives = 34/58 (58.62%), Query Frame = 1
Query:   28 LALVAVAIVVLGSWRYSGGKPM---SLPGDIRYESEEISVYFPWVSCILLSVFGNILL 192
            L ++ +  +  G +  +GGK      LPGDI +      VYFPWVSC+++S+ G +LL
Sbjct:    7 LVILGIICIAAGLFFMAGGKLSFLGHLPGDIHFSKGNTDVYFPWVSCLVVSIVGTVLL 64          
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: A0A359ETD3_9FIRM (DUF2905 domain-containing protein n=1 Tax=Acidaminococcaceae bacterium TaxID=2049052 RepID=A0A359ETD3_9FIRM)

HSP 1 Score: 48.9 bits (115), Expect = 7.300e-6
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   28 LALVAVAIVVLGSWRYSGGKPM---SLPGDIRYESEEISVYFPWVSCILLSVFGNIL 189
            L  + + +V+ G   + GGK +   SLPGDI  E +  S YFPWVSCI++SV  ++L
Sbjct:    2 LIQLGIILVITGVVIHFGGKFLPFGSLPGDIHMEGKHGSFYFPWVSCIVISVILSVL 58          
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: A0A316LM12_9FIRM (DUF2905 domain-containing protein n=2 Tax=Veillonellaceae TaxID=31977 RepID=A0A316LM12_9FIRM)

HSP 1 Score: 48.9 bits (115), Expect = 8.770e-6
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1
Query:   28 LALVAVAIVVLGSWRYSGGK-PM--SLPGDIRYESEEISVYFPWVSCILLSVFGNILL 192
            L  + V ++  G     GGK P   +LPGDI ++S    +YFPWV+C+L+S  G I+L
Sbjct:    8 LIFLGVILIAAGILISIGGKIPFMGNLPGDIHFKSGNTEIYFPWVTCLLISFLGTIIL 65          
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: UPI001B1793D8 (Uncharacterized protein n=2 Tax=Paenibacillus TaxID=44249 RepID=UPI001B1793D8)

HSP 1 Score: 49.3 bits (116), Expect = 9.100e-6
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1
Query:   28 LALVAVAIV--VLGSWRYSGGKPMSLPGDIRYESEEISVYFPWVSCILLSVFGNILL 192
            L L+A  ++  ++G W   G     LPGDI YE + + VYFP V+C+++SV G++LL
Sbjct:   31 LVLIAAGLIWWLVGRWLPLG----RLPGDIVYEKDNVKVYFPIVTCLIISVVGSLLL 83          
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: A0A3M2ACQ1_9CHLR (DUF2905 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M2ACQ1_9CHLR)

HSP 1 Score: 48.1 bits (113), Expect = 1.920e-5
Identity = 24/62 (38.71%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   28 LALVAVAIVVLGSWRYSGGKPM----SLPGDIRYESEEISVYFPWVSCILLSVFGNILLRAL 201
            L  + +AI  +G      G+ M    +LPGD RYE+E + VYFP  + +L+S+ G+ILL  +
Sbjct:    8 LLFIGLAIAFIGLVLVLAGRFMPWLGNLPGDFRYETENVRVYFPLATMLLISIVGSILLNLI 69          
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: A0A1Q8QT87_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio sp. DV TaxID=1844708 RepID=A0A1Q8QT87_9DELT)

HSP 1 Score: 48.1 bits (113), Expect = 2.150e-5
Identity = 19/36 (52.78%), Postives = 27/36 (75.00%), Query Frame = 1
Query:   97 LPGDIRYESEEISVYFPWVSCILLSVFGNILLRALQ 204
            LPGD+R + E  SVYFPWVSC+++S   ++LL  L+
Sbjct:   44 LPGDVRVKGEGFSVYFPWVSCLVVSALASLLLWLLR 79          
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: A0A0B1U010_9DELT (Uncharacterized protein n=1 Tax=Desulfovibrio sp. TomC TaxID=1562888 RepID=A0A0B1U010_9DELT)

HSP 1 Score: 48.1 bits (113), Expect = 2.150e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1
Query:   97 LPGDIRYESEEISVYFPWVSCILLSVFGNILLRALQ 204
            LPGD+R + E  SVYFPWVSC+L+SV  + +L  L+
Sbjct:   44 LPGDVRLKGEGFSVYFPWVSCLLVSVLVSFILWLLR 79          
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Match: A0A8I1WLA2_9FIRM (DUF2905 domain-containing protein n=1 Tax=Acidaminococcaceae bacterium TaxID=2049052 RepID=A0A8I1WLA2_9FIRM)

HSP 1 Score: 47.8 bits (112), Expect = 2.220e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   28 LALVAVAIVVLGSWRYSGGKPM---SLPGDIRYESEEISVYFPWVSCILLSVFGNIL 189
            L  + + ++V G   + GGK +   +LPGDI  E +  S YFPWVSCI++SV  ++L
Sbjct:    5 LIQLGIVLIVAGVVIHFGGKFLPFGNLPGDIHVEGKHGSFYFPWVSCIVISVVLSVL 61          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12265.1900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A5N1JA67_9BACT5.810e-736.92DUF2905 domain-containing protein n=1 Tax=Adhaerib... [more]
UPI00190D88E51.140e-643.64DUF2905 domain-containing protein n=1 Tax=Adhaerib... [more]
R7CS96_9FIRM3.020e-637.93Uncharacterized protein n=2 Tax=Dialister TaxID=39... [more]
A0A359ETD3_9FIRM7.300e-643.86DUF2905 domain-containing protein n=1 Tax=Acidamin... [more]
A0A316LM12_9FIRM8.770e-641.38DUF2905 domain-containing protein n=2 Tax=Veillone... [more]
UPI001B1793D89.100e-642.11Uncharacterized protein n=2 Tax=Paenibacillus TaxI... [more]
A0A3M2ACQ1_9CHLR1.920e-538.71DUF2905 domain-containing protein n=1 Tax=Chlorofl... [more]
A0A1Q8QT87_9DELT2.150e-552.78Uncharacterized protein n=1 Tax=Desulfovibrio sp. ... [more]
A0A0B1U010_9DELT2.150e-555.56Uncharacterized protein n=1 Tax=Desulfovibrio sp. ... [more]
A0A8I1WLA2_9FIRM2.220e-542.11DUF2905 domain-containing protein n=1 Tax=Acidamin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12265contigEcto-sp13_S_contig12265:4239..4499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size261
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionProtein of unknown function DUF2905
Ec32 orthologEc-17_003660.1
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.1350734-CDS-Ecto-sp13_S_contig12265:4238..44991681462652.1350734-CDS-Ecto-sp13_S_contig12265:4238..4499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12265 4239..4499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12265.1900.1prot_Ecto-sp13_S_contig12265.1900.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12265 4239..4499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12265.1900.1

>prot_Ecto-sp13_S_contig12265.1900.1 ID=prot_Ecto-sp13_S_contig12265.1900.1|Name=mRNA_Ecto-sp13_S_contig12265.1900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MIEPALRWPLALVAVAIVVLGSWRYSGGKPMSLPGDIRYESEEISVYFPW
VSCILLSVFGNILLRALQGGDGVGRVLNGGATGHRP*
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mRNA from alignment at Ecto-sp13_S_contig12265:4239..4499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12265.1900.1 ID=mRNA_Ecto-sp13_S_contig12265.1900.1|Name=mRNA_Ecto-sp13_S_contig12265.1900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12265:4239..4499- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAGCCAGCCCTACGCTGGCCGCTAGCCTTGGTAGCCGTAGCCAT TGTCGTGCTCGGGTCGTGGAGGTACTCTGGCGGCAAGCCCATGTCGCTCC CTGGTGACATACGGTACGAGAGCGAGGAAATTAGCGTTTACTTCCCCTGG GTGTCATGTATCCTGCTGTCGGTGTTCGGCAACATTTTGTTGCGCGCGTT GCAGGGAGGGGATGGTGTAGGGCGTGTGCTGAACGGGGGCGCAACGGGCC ACCGTCCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12265:4239..4499-

>mRNA_Ecto-sp13_S_contig12265.1900.1 ID=mRNA_Ecto-sp13_S_contig12265.1900.1|Name=mRNA_Ecto-sp13_S_contig12265.1900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12265:4239..4499- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGAGCCAGCCCTACGCTGGCCGCTAGCCTTGGTAGCCGTAGCCAT
TGTCGTGCTCGGGTCGTGGAGGTACTCTGGCGGCAAGCCCATGTCGCTCC
CTGGTGACATACGGTACGAGAGCGAGGAAATTAGCGTTTACTTCCCCTGG
GTGTCATGTATCCTGCTGTCGGTGTTCGGCAACATTTTGTTGCGCGCGTT
GCAGGGAGGGGATGGTGTAGGGCGTGTGCTGAACGGGGGCGCAACGGGCC
ACCGTCCATAG
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