mRNA_Ecto-sp13_S_contig77605.19000.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77605.19000.1
Unique NamemRNA_Ecto-sp13_S_contig77605.19000.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: A0A6H5K8N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N6_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 8.870e-44
Identity = 77/89 (86.52%), Postives = 82/89 (92.13%), Query Frame = 1 
Query:    1 KDVRKDVQCEAPLFDAVSDGQEQIVADLLAAGACPNARFGGEEGYTPLHVASSRGDVGILTELLAFGAHRDALDNRGARPLHHSIAEDR 267
            KDVR+  QCE PLF+AVSD QEQIVADLLAAGACPNARFGGEEGY PLHVASSRG VGILT LL+FGAHRDA+DNRGARPLHH+IAEDR
Sbjct:   25 KDVREGGQCE-PLFEAVSDEQEQIVADLLAAGACPNARFGGEEGYAPLHVASSRGHVGILTTLLSFGAHRDAVDNRGARPLHHAIAEDR 112
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: D7FYF2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF2_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.010e-34
Identity = 66/89 (74.16%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    1 KDVRKDVQCEAPLFDAVSDGQEQIVADLLAAGACPNARFGGEEGYTPLHVASSRGDVGILTELLAFGAHRDALDNRGARPLHHSIAEDR 267
            KDVR+D QCE PLF+AVSDGQEQIVADLLAAGACPNARFGGEEGY PLHV                 AHRDALDNRGARPLHH+IAEDR
Sbjct:   25 KDVREDGQCE-PLFEAVSDGQEQIVADLLAAGACPNARFGGEEGYAPLHVXXXXXXXXXXXXXXXXXAHRDALDNRGARPLHHAIAEDR 112
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: A0A7W4ZY76_9ACTN (Uncharacterized protein n=5 Tax=Streptomyces TaxID=1883 RepID=A0A7W4ZY76_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 2.950e-7
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   67 QIVADLLAAGACPNARFGGEEGYTPLHVASSRGDVGILTELLAFGAHRDA 216
            ++VA L+AAGA P+ARFGG    TPLH A+S  DV +L  LLA GA  +A
Sbjct:   70 EVVAALVAAGADPDARFGGAHAETPLHWAASSNDVAVLDALLAAGADIEA 119
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: B2B6G4_PODAN (Podospora anserina S mat+ genomic DNA chromosome 2, supercontig 2 n=2 Tax=Podospora anserina (strain S / ATCC MYA-4624 / DSM 980 / FGSC 10383) TaxID=515849 RepID=B2B6G4_PODAN)

HSP 1 Score: 52.4 bits (124), Expect = 7.860e-6
Identity = 36/82 (43.90%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   16 DVQCEAPLFDAVSDGQ-EQIVADLLAAGACPNARFGGEEGYTPLHVASS--RGDVGILTELLAFGAHRDALDNRGARPLHHS 252
            D Q + PL+ AVS    EQ+V +LL AGA PN +  G+E  TPLH A S  + +  I+T LL   A   A D+ G  PLH++
Sbjct: 1058 DTQKDTPLYRAVSRNHAEQVVHELLEAGADPNWKNLGQEDRTPLHQACSVNKDNSLIITCLLDHQADALARDDDGWTPLHYT 1139
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: A0A7S0IMC6_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IMC6_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 3.400e-5
Identity = 29/71 (40.85%), Postives = 35/71 (49.30%), Query Frame = 1 
Query:   28 EAPLFDAVSDGQEQIVADLLAAGACPNARFGGEEGYTPLHVASSRGDVGILTELLAFGAHRDALDNRGARP 240
            E PL  A     E  VA+LLAAGACPN        +T L +AS  G   +   L++ GA  D  D  GA P
Sbjct:   69 ETPLIRASRCACEDTVANLLAAGACPNQTTTDHRRHTALWIASLEGHTAVAALLISGGATVDQADASGATP 139
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: A0A194XIY4_9HELO (Ankyrin n=1 Tax=Mollisia scopiformis TaxID=149040 RepID=A0A194XIY4_9HELO)

HSP 1 Score: 50.1 bits (118), Expect = 4.920e-5
Identity = 28/81 (34.57%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:   16 DVQCEAPLFDAVSDGQEQIVADLLAAGACPNARFGGEEGYTPLHVASSRGDVGILTELLAFGAHRDALDNRGARPLHHSIA 258
            D+   + LFDA+ +G E+ V ++L +G   + R       TPLH A  +G+V I+  +L + A  DA   +   PLH +IA
Sbjct:  143 DLTSRSRLFDAILNGDEEEVTEMLFSGT--SIRMRDTNNNTPLHAAILKGNVAIVNSILNYRADIDATGFKRRAPLHLAIA 221
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: UPI0019C86A31 (Ankyrin repeat domain-containing protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=UPI0019C86A31)

HSP 1 Score: 49.3 bits (116), Expect = 5.280e-5
Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:   70 IVADLLAAGACPNARFGGEEGYTPLHVASSRGDVGILTELLAFGAHRDALDNRGARP 240
            ++A LLAAG+  +A     +GYTPLH+A+SRGD      LLA GA RDA    G  P
Sbjct:  122 VIAALLAAGS--SAAVADIQGYTPLHLAASRGDRAASELLLACGAERDARTPDGKSP 176
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: A0A843TAL2_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Gemmatimonas sp. TaxID=1962908 RepID=A0A843TAL2_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 6.580e-5
Identity = 33/66 (50.00%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:   67 QIVADLLAAGACPNARFGGEEGYTPLHVASSRGDVGILTELLAFGAHRDALDNRGARPLHHSIAED 264
            +IV  LLA+GA  NA  GG  GYTPLH+A SRGD  ++ ELL  GA     D+ G  P    IA D
Sbjct:  145 EIVRRLLASGADVNATGGG--GYTPLHLACSRGDAPLVEELLRRGAEIRPTDD-GRTPA--QIARD 205
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: UPI000C1424CD (ankyrin repeat and SOCS box protein 3-like isoform X1 n=2 Tax=Spodoptera litura TaxID=69820 RepID=UPI000C1424CD)

HSP 1 Score: 49.3 bits (116), Expect = 9.090e-5
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:  109 ARFGGEEGYTPLHVASSRGDVGILTELLAFGAHRDALDNRGARPLHHSI 255
            A +G  EG TPLH+ASS+G+V ++  L+ +GA  D  D  G  PLH ++
Sbjct:  104 ANYGSTEGVTPLHIASSQGNVELIELLIEYGAIMDVQDFDGDTPLHDAV 152
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BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Match: A0A6J8CGF4_MYTCO (Uncharacterized protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8CGF4_MYTCO)

HSP 1 Score: 49.3 bits (116), Expect = 9.390e-5
Identity = 28/57 (49.12%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   34 PLFDAVSDGQEQIVADLLAAGACPNARFGGEEGYTPLHVASSRGDVGILTELLAFGA 204
            PL  A S     I+  L A GA  N      +GYTPLH A  RGDV ++TELLA+GA
Sbjct:  138 PLHWAASFANRDIIQCLCARGADVNQI--NSQGYTPLHDAIKRGDVEVITELLAYGA 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77605.19000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5K8N6_9PHAE8.870e-4486.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF2_ECTSI2.010e-3474.16Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A7W4ZY76_9ACTN2.950e-756.00Uncharacterized protein n=5 Tax=Streptomyces TaxID... [more]
B2B6G4_PODAN7.860e-643.90Podospora anserina S mat+ genomic DNA chromosome 2... [more]
A0A7S0IMC6_9EUKA3.400e-540.85Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
A0A194XIY4_9HELO4.920e-534.57Ankyrin n=1 Tax=Mollisia scopiformis TaxID=149040 ... [more]
UPI0019C86A315.280e-549.12Ankyrin repeat domain-containing protein n=1 Tax=G... [more]
A0A843TAL2_9BACT6.580e-550.00Ankyrin repeat domain-containing protein n=1 Tax=G... [more]
UPI000C1424CD9.090e-544.90ankyrin repeat and SOCS box protein 3-like isoform... [more]
A0A6J8CGF4_MYTCO9.390e-549.12Uncharacterized protein n=2 Tax=Mytilus TaxID=6548... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77605contigEcto-sp13_S_contig77605:356..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score129.0
Seed ortholog evalue1.1e-27
Seed eggNOG ortholog2880.D7FYF2
Model size267
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size267
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.3044646-CDS-Ecto-sp13_S_contig77605:355..6221681464046.3044646-CDS-Ecto-sp13_S_contig77605:355..622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77605 356..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77605.19000.1prot_Ecto-sp13_S_contig77605.19000.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77605 356..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77605.19000.1

>prot_Ecto-sp13_S_contig77605.19000.1 ID=prot_Ecto-sp13_S_contig77605.19000.1|Name=mRNA_Ecto-sp13_S_contig77605.19000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
KDVRKDVQCEAPLFDAVSDGQEQIVADLLAAGACPNARFGGEEGYTPLHV
ASSRGDVGILTELLAFGAHRDALDNRGARPLHHSIAEDR
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mRNA from alignment at Ecto-sp13_S_contig77605:356..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77605.19000.1 ID=mRNA_Ecto-sp13_S_contig77605.19000.1|Name=mRNA_Ecto-sp13_S_contig77605.19000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77605:356..622+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGACGTACGTAAAGATGTCCAATGCGAAGCTCCTCTCTTCGACGCCGT
TTCAGACGGGCAGGAACAGATCGTGGCTGACCTCTTGGCCGCCGGGGCTT
GCCCGAACGCGCGATTCGGGGGGGAGGAAGGCTACACTCCCCTCCACGTT
GCGTCTTCTAGAGGGGACGTAGGCATTCTCACCGAGCTTTTGGCCTTCGG
GGCACACAGGGACGCTCTCGACAACCGCGGCGCCCGACCGCTCCATCACT
CGATCGCCGAAGACAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77605:356..622+

>mRNA_Ecto-sp13_S_contig77605.19000.1 ID=mRNA_Ecto-sp13_S_contig77605.19000.1|Name=mRNA_Ecto-sp13_S_contig77605.19000.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77605:356..622+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGACGTACGTAAAGATGTCCAATGCGAAGCTCCTCTCTTCGACGCCGT
TTCAGACGGGCAGGAACAGATCGTGGCTGACCTCTTGGCCGCCGGGGCTT
GCCCGAACGCGCGATTCGGGGGGGAGGAAGGCTACACTCCCCTCCACGTT
GCGTCTTCTAGAGGGGACGTAGGCATTCTCACCGAGCTTTTGGCCTTCGG
GGCACACAGGGACGCTCTCGACAACCGCGGCGCCCGACCGCTCCATCACT
CGATCGCCGAAGACAGA
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