mRNA_Ecto-sp13_S_contig7760.18999.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7760.18999.1
Unique NamemRNA_Ecto-sp13_S_contig7760.18999.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: A0A6H5KXJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXJ8_9PHAE)

HSP 1 Score: 527 bits (1357), Expect = 3.410e-170
Identity = 267/285 (93.68%), Postives = 272/285 (95.44%), Query Frame = 1 
Query:  280 KTVPPPHDDGVDGGGSDTLFAPSVPGDTRPGPSRVGTTAGGEEIEAIGDGAGAMGTSHLEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFHLKHRTARNRWTVPEGFPSEEVINAYNNPQ 1134
            + VPPPHDD V  GG+D LFAPSVPGDTRPGPSRVG   GGE  EA GDG G MGTS+LEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCC+LEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEV+ALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFHLKHRTARNRWTVPEGFPSEEVINAYNNPQ
Sbjct: 1202 RKVPPPHDDEVGEGGTDALFAPSVPGDTRPGPSRVGIARGGEGKEANGDGEGVMGTSYLEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCMLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVIALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFHLKHRTARNRWTVPEGFPSEEVINAYNNPQ 1486
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: D7FZY4_ECTSI (DNA repair enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY4_ECTSI)

HSP 1 Score: 518 bits (1335), Expect = 2.360e-166
Identity = 267/288 (92.71%), Postives = 274/288 (95.14%), Query Frame = 1 
Query:  277 RKTVPPPHDDG--VDGGGSDTLFAPSVPGDTRPGPSRVGTTAGGEEIEAIGDGAGAMGTSHLEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFHLKHRTARNRWTVPEGFPSEEVINAYNNPQ 1134
            RK  PP  +DG  V GGG+D+LFAPSV GDTRPGPSRVGT AGG  IEA GDG G MGTS+LEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVM+LLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFS+RKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFHLKHRTARNRWTVP+GFPSEEVINAYNNPQ
Sbjct: 1210 RKYSPPRGNDGDEVGGGGTDSLFAPSVRGDTRPGPSRVGTAAGGGGIEANGDGEGVMGTSYLEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVMDLLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSDRKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFHLKHRTARNRWTVPDGFPSEEVINAYNNPQ 1497
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: A0A836CHS7_9STRA (XPGI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHS7_9STRA)

HSP 1 Score: 255 bits (651), Expect = 1.970e-75
Identity = 137/245 (55.92%), Postives = 172/245 (70.20%), Query Frame = 1 
Query:  421 GDGAGAMGTSHLEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHG--LSKFKKWIDGFDPLLDQELEGLTKRGSQK-----EIDGLSLEMKFHLKHRTARNRWTVPEGFPSEEVINAYNNPQ 1134
            GD AG        G+D+D  E+++   +R   KAQRDAETVT+EM +EV ELL L GVPY+VAPMEAEAQC  LE+L LVDG VTDDSDAF FG +AVYKNIF ++K+VEAYLLPD   + G+ T  + ALALL+GSDYT G++ VG+VNAME++ AFPL    A     L +FK+W+DGFDPL D +LE    R  ++     E +G++L  +FHLKHR+ARNRW     FPSEEV+ AY  PQ
Sbjct:  140 GDYAGIGXXXXDSGIDDDAEEDDA---RRAHKKAQRDAETVTQEMLDEVKELLHLLGVPYLVAPMEAEAQCVELERLGLVDGIVTDDSDAFVFGAKAVYKNIFEDQKYVEAYLLPDITAEFGISTPHLRALALLMGSDYTLGIKNVGLVNAMEIVRAFPLRAGEASPAPALRRFKEWLDGFDPLGDAQLEKRVARAIREGPEAEEREGVTLAQRFHLKHRSARNRWIASPSFPSEEVLRAYEKPQ 381
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: A0A7S4MZJ3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZJ3_9STRA)

HSP 1 Score: 239 bits (610), Expect = 1.520e-67
Identity = 117/222 (52.70%), Postives = 164/222 (73.87%), Query Frame = 1 
Query:  475 ELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKG---AHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFHLKHRTARNRWTVPEGFPSEEVINAYNNP 1131
            +L+++ + +++E N+ QRD + +TEEMKEE+++LL+LFGVPYV +P EAEAQC +LE+L LVDG VT+DSD F FGGR VYKNIF ++K+VE YL  DAE+++G+  + ++ALA+L+G DYTEGV+GVGIVN ME++ AF         A  GL  F+KW++GFDP ++      TKRG  +++   + E  FHLKHR+AR RWTVP+ FP+  V+ AY NP
Sbjct:  607 DLQDQYDLMQQEDNRRQRDMDGMTEEMKEEIIQLLRLFGVPYVESPAEAEAQCAMLEELGLVDGVVTEDSDIFVFGGRNVYKNIFDDQKYVEVYLSRDAEREIGLTRERMIALAMLMGGDYTEGVKGVGIVNGMEILEAFFTSAGALDDAEVGLEAFRKWLEGFDPSIELNGTDKTKRGGTEDM---TSEEIFHLKHRSARTRWTVPKDFPAANVLKAYRNP 825
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: B8C7S2_THAPS (DNA repair enzyme (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C7S2_THAPS)

HSP 1 Score: 218 bits (556), Expect = 3.710e-65
Identity = 109/205 (53.17%), Postives = 145/205 (70.73%), Query Frame = 1 
Query:  523 QRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGF-DPLLDQELEGLTKRGSQKEIDG-LSLEMKFHLKHRTARNRWTVPEGFPSEEVINAYNNP 1131
            +RD  T+T+EMKE+++ELL+L G+P+V +P EAEAQC  LE+L LVDG VT+DSD F FGGR VYKN F+E+++VEAY   DAEK+L +G  +++ALA+LLG DYT+GV+GVGIVN ME++ AFP+ G+  H  L KF++W+DG  DP                  DG LS EM FH KH++AR+RW  P  FPS  +I+AY  P
Sbjct:    7 ERDISTITDEMKEDILELLELCGIPWVESPSEAEAQCAALEELGLVDGVVTEDSDIFVFGGRKVYKNFFNEQQYVEAYYAKDAEKELALGKHQMIALAMLLGGDYTDGVKGVGIVNGMEILQAFPI-GEDIHASLQKFREWLDGMGDP--------------PSNADGTLSNEMIFHKKHKSARHRWVAPSDFPSRAIISAYQKP 196
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: W7TX36_9STRA (Dna repair enzyme n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TX36_9STRA)

HSP 1 Score: 231 bits (588), Expect = 5.070e-65
Identity = 140/280 (50.00%), Postives = 178/280 (63.57%), Query Frame = 1 
Query:  385 GTTAGGEEIEAIGDGAGA-MGTSHLEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPL--EGKGA--------HHGLSKFKKWIDGFDPLLD-------------QELEGLTKRGSQ-----KEIDGLSLEMK-FHLKHRTARNRWTVPEGFPSEEVINAYNNPQ 1134
            G  AGG++      G+G   GT   E M  D L++E+  L+    K  RDAETV++EM+E++M LL+LFGVPY+VAPMEAEAQC VLE L LVDG V+DDSD+F FG RAVYKNIF ERK+VEAY   D E++LG+   ++V+LALLLGSDYTEGV+GVGIVNAMEV+ AF    EG+G           GL  FK W+DGFDPL D             +E E + K G +     +    ++ E++ FH KH++AR RW V E FP   +  AY  PQ
Sbjct:  330 GIGAGGKDQPESSAGSGTWQGTEEYEDMSRD-LDDEA-ALRSRMRKELRDAETVSQEMREDIMHLLQLFGVPYLVAPMEAEAQCAVLETLGLVDGVVSDDSDSFLFGARAVYKNIFDERKYVEAYRAEDLERELGLKRVDLVSLALLLGSDYTEGVKGVGIVNAMEVVRAFAPREEGEGETEVRGGKPEEGLQHFKAWLDGFDPLGDLSLRADRKLVDDREEDEAVDKAGEEGGSTRRRAAWVTQEVEAFHSKHKSARTRWVVTERFPDPAIYRAYLQPQ 607
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: A0A7S2LMT5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LMT5_9STRA)

HSP 1 Score: 223 bits (567), Expect = 7.540e-65
Identity = 118/221 (53.39%), Postives = 154/221 (69.68%), Query Frame = 1 
Query:  472 DELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLS-LEMKFHLKHRTARNRWTVPEGFPSEEVINAYNNP 1131
            DEL+EE+   +RE    QRD++ +TE+MKEEV+ELL+LFG+P+V AP EAEAQC  LEQL LV+G VTDDSDA  FGG+ VYKNIF +RK+VE Y   DA+ +L +  +  VALA+LLG DYT GV+GVGIVN ME++ A+P  G     GL KFK+W+DGF+    +++E   K      ++GL   E  F +KHRTAR RW  P+ FPS  V++AY  P
Sbjct:  159 DELKEEAGVFEREEKSRQRDSDMITEDMKEEVIELLQLFGIPFVHAPAEAEAQCVALEQLGLVNGVVTDDSDAIVFGGQVVYKNIFDDRKYVEIYQAEDAQNELALNRNHFVALAMLLGGDYTSGVKGVGIVNGMEIMQAYPDIGNDVMGGLQKFKRWLDGFNA---EDIEQSCK------VEGLEDKERLFAIKHRTARTRWEPPKDFPSPGVMDAYLKP 370
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: A0A7S2WUF9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUF9_9STRA)

HSP 1 Score: 230 bits (586), Expect = 3.480e-64
Identity = 118/224 (52.68%), Postives = 154/224 (68.75%), Query Frame = 1 
Query:  472 DELEE---ESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEMKFHLKHRTARNRWTVPEGFPSEEVINAYNNPQ 1134
            D+LE+   E + L+    K QRDAE +T+EM+EEVMELL+LFG+P++VAPMEAE+QC +LE+L LV+G VTDDSDAF FG   VYKNIF ++K+VEAYL  DA +++G+G  E V LALLLGSDYT+GVRGVGIVNAME++ AFP   +    GL  FK W+D ++P+ D     L ++         +   +F  KH+ AR RWTV  GFP   V+  Y  PQ
Sbjct:  532 DDLEDAHAELQSLRAGKRKMQRDAEHITDEMREEVMELLRLFGIPFLVAPMEAESQCAMLEELGLVEGVVTDDSDAFLFGAETVYKNIFDDKKYVEAYLAEDARREIGIGRQEFVCLALLLGSDYTDGVRGVGIVNAMEIMEAFPPAAENPLEGLRGFKNWLDSYNPVDD----ALGRQADAPPEGASAARKRFEDKHKGARRRWTVGNGFPERAVVAGYLQPQ 751
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: A0A7S0UIJ3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UIJ3_9STRA)

HSP 1 Score: 225 bits (574), Expect = 5.660e-64
Identity = 113/198 (57.07%), Postives = 144/198 (72.73%), Query Frame = 1 
Query:  541 VTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSL-EMKFHLKHRTARNRWTVPEGFPSEEVINAYNNP 1131
            VTEEM+ EVM+LL+LFG+PYVVAP EAEAQC  LE+L LVDG VT+DSD F FGG+ VYKNIF ++K+VE Y   DA +++ +  D ++ALA+LLG DYTEGV+GVGIVN MEV+ AF +  +    GL +F+KW+DGFDP  DQ     +K+G+  EI   S+ E  FH KH TAR RW  P+ FP  +V+NAY NP
Sbjct:  255 VTEEMRTEVMQLLRLFGIPYVVAPAEAEAQCVELERLGLVDGIVTEDSDTFVFGGQVVYKNIFDDKKYVEVYHTKDASEEMNLTQDSLIALAMLLGGDYTEGVKGVGIVNGMEVLQAFDVA-QDCEEGLKRFRKWLDGFDPF-DQ-----SKKGATPEIANRSVQEQVFHRKHHTARTRWIAPKHFPDAKVLNAYRNP 445
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BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Match: A0A4D9D712_9STRA (XPGI domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D712_9STRA)

HSP 1 Score: 229 bits (585), Expect = 1.880e-63
Identity = 133/261 (50.96%), Postives = 167/261 (63.98%), Query Frame = 1 
Query:  439 MGTSHLEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLFGVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSERKFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVINAFPL--------EGKGA--HHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDG------------------LSLEMK-FHLKHRTARNRWTVPEGFPSEEVINAYNNPQ 1134
             GT   E M  D L++E+  L+    K  RDAETV++EM+E++M LL+LFGVP++VAPMEAEAQC VLE L LVDG V+DDSD+F FG RAVYKNIF ERK+VEAY   D E++LG+   ++V+LALLLGSDYTEGV+GVGIVNAMEV+ AF L        EG+G     GL  FK W+DGFDPL D  +         +E DG                  ++ E++ FH KH++AR RW V E FP   +  AY  PQ
Sbjct:  889 QGTEEYEDMSRD-LDDEA-ALRSRMRKELRDAETVSQEMREDIMHLLQLFGVPFLVAPMEAEAQCAVLETLGLVDGVVSDDSDSFLFGARAVYKNIFDERKYVEAYRAEDLERELGLKRVDLVSLALLLGSDYTEGVKGVGIVNAMEVVRAFALREGGEGETEGRGGKPEEGLQHFKAWLDGFDPLGDLSMRADRNLVDDREEDGAEDKAGEEGGSTRRRAAWVTQEVEAFHSKHKSARTRWVVTERFPDPAIYRAYLQPQ 1147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7760.18999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXJ8_9PHAE3.410e-17093.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY4_ECTSI2.360e-16692.71DNA repair enzyme n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836CHS7_9STRA1.970e-7555.92XPGI domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S4MZJ3_9STRA1.520e-6752.70Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B8C7S2_THAPS3.710e-6553.17DNA repair enzyme (Fragment) n=1 Tax=Thalassiosira... [more]
W7TX36_9STRA5.070e-6550.00Dna repair enzyme n=2 Tax=Nannochloropsis gaditana... [more]
A0A7S2LMT5_9STRA7.540e-6553.39Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2WUF9_9STRA3.480e-6452.68Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0UIJ3_9STRA5.660e-6457.07Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A4D9D712_9STRA1.880e-6350.96XPGI domain-containing protein n=1 Tax=Nannochloro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7760contigEcto-sp13_S_contig7760:408..6656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score451.4
Seed ortholog evalue2.5e-124
Seed eggNOG ortholog2880.D7FZY4
Preferred namegen-1
Model size1136
KEGG koko:K10846
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000724,GO:0000725,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0008821,GO:0009987,GO:0012501,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0023052,GO:0031570,GO:0033554,GO:0034641,GO:0035556,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045786,GO:0046483,GO:0048519,GO:0048523,GO:0048580,GO:0048581,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051239,GO:0051241,GO:0051716,GO:0051726,GO:0061062,GO:0061064,GO:0065007,GO:0071704,GO:0072395,GO:0072401,GO:0072422,GO:0090304,GO:0090305,GO:0097190,GO:0097193,GO:0140097,GO:1901360,GO:2000026
Exons8
EggNOG free text desc.nucleotide-excision repair, DNA incision, 3'-to lesion
EggNOG OGsCOG0258@1,KOG2520@2759
Cds size696
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7760.18999.1prot_Ecto-sp13_S_contig7760.18999.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7760 1016..6656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.1833537-UTR-Ecto-sp13_S_contig7760:407..6921681464046.1833537-UTR-Ecto-sp13_S_contig7760:407..692Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7760 408..692 +
1681464046.1949008-UTR-Ecto-sp13_S_contig7760:862..10151681464046.1949008-UTR-Ecto-sp13_S_contig7760:862..1015Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7760 863..1015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.2040653-CDS-Ecto-sp13_S_contig7760:1015..11411681464046.2040653-CDS-Ecto-sp13_S_contig7760:1015..1141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7760 1016..1141 +
1681464046.2136402-CDS-Ecto-sp13_S_contig7760:1659..17191681464046.2136402-CDS-Ecto-sp13_S_contig7760:1659..1719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7760 1660..1719 +
1681464046.223654-CDS-Ecto-sp13_S_contig7760:1945..20981681464046.223654-CDS-Ecto-sp13_S_contig7760:1945..2098Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7760 1946..2098 +
1681464046.233114-CDS-Ecto-sp13_S_contig7760:4475..45771681464046.233114-CDS-Ecto-sp13_S_contig7760:4475..4577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7760 4476..4577 +
1681464046.244301-CDS-Ecto-sp13_S_contig7760:5003..50991681464046.244301-CDS-Ecto-sp13_S_contig7760:5003..5099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7760 5004..5099 +
1681464046.2660632-CDS-Ecto-sp13_S_contig7760:5732..58301681464046.2660632-CDS-Ecto-sp13_S_contig7760:5732..5830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7760 5733..5830 +
1681464046.276817-CDS-Ecto-sp13_S_contig7760:6595..66561681464046.276817-CDS-Ecto-sp13_S_contig7760:6595..6656Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7760 6596..6656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7760.18999.1

>prot_Ecto-sp13_S_contig7760.18999.1 ID=prot_Ecto-sp13_S_contig7760.18999.1|Name=mRNA_Ecto-sp13_S_contig7760.18999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=232bp
MGTSHLEGMDEDELEEESEKLKREGNKAQRDAETVTEEMKEEVMELLKLF
GVPYVVAPMEAEAQCCVLEQLRLVDGTVTDDSDAFAFGGRAVYKNIFSER
KFVEAYLLPDAEKDLGVGTDEVVALALLLGSDYTEGVRGVGIVNAMEVIN
AFPLEGKGAHHGLSKFKKWIDGFDPLLDQELEGLTKRGSQKEIDGLSLEM
KFHLKHRTARNRWTVPEGFPSEEVINAYNNPQ
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mRNA from alignment at Ecto-sp13_S_contig7760:408..6656+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7760.18999.1 ID=mRNA_Ecto-sp13_S_contig7760.18999.1|Name=mRNA_Ecto-sp13_S_contig7760.18999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7760:408..6656+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGACGTCGAGAGCGTTTTTTCCGACTCTGACGGTGAGCGGGGGCCGCCG
GACCCGCTAGGTCAACGCACGCATGCTGGGGTTTCCAGAGAGGCGGCGGT
GGGGGCCAATAGGACGGCGACAGGCGAGAGGTTTCCGCCTCGCACGGAGG
CCGAAGAACCAGAGGGGGCAGAGGAGGTATCGGGAGAGGCAGTAGCAGCG
CCTGCGCCTGGCGCTAGGAGCGCATCATCGCCAGCAAGTCCACCAGAGCC
GACCGAAGGCGTAGCGGCCTCTAAGGAGGAAGACGGTGAATCCGCCCGCG
TCGGCGTTCCACCGCAAGCGATTCCGCCGCAAGGGGTAGCAGCGGAATCG
CTGGGGCAAGGGCAGCGCGGCGGTCACGACGCGACCGAGGTTGATGAAAA
CGCCTGCGCAAAGGGAAAGCCCGTCGCGGACGGACCGACTTCGGCTACCC
GTAAGGTTCCTCCCCCTCACGATGACGGAGTCGACGGAGGTGGATCGGAC
ACGCTCTTTGCCCCATCGGTGCCGGGAGACACCCGCCCGGGACCCTCTCG
AGTCGGAACAACGGCGGGTGGCGAGGAGATAGAGGCGATCGGAGACGGGG
CGGGGGCGATGGGCACGTCGCACCTGGAGGGCATGGACGAGGACGAGCTG
GAGGAGGAGTCTGAGAAGCTGAAGCGGGAGGGCAACAAGGCGCAGCGTGA
CGCGGAGACTGTTACGGAGGAGATGAAGGAGGAGGTGAGGTGCAATGGCA
GTGGCGGTGGTGGCGTTTTTCCTGCGAAATAAGTCGTTCATCTCCATCAG
GCTTGTCAATAGAGAATACGTATGTTTTTGCTGAACCCTCCTCGCGGTAG
AATCGAAGTCAAGCGTAGTAGAGGAATGTGTCTGCGTACGTATCCCGGAT
CGTGGCTCCTCAGCAGAGAGGGTGCTACTGCTGTGGATGCTGCGACGGAC
AGCAGGAGAAGTGGGATGATATGCATTGATGGAACGCGCATGACACAAGT
AGTTGGCTGTTTTCTTAGAGCTGAGCTATTCTGAAGCTTACTTGGAATCC
AGAAACGCGACACTTGTTCATAATCTTACCTTAAGTAATGCGGGTTGTAA
CTGAGTCGTGAATCAATCCGTTCATGACTGATTAGCTGCTTTTGGATTAC
ATGTTTTTTGCTAATGCTCAATTTTTGAGTCGGCTGTACTGCCGTGTTGA
TAACGCTGGCGATGTAAACGCTTGGGCGTTTTTGTGATGCTCGCCTCCCT
AGGTGATGGAACTCCTGAAGCTGTTCGGTGTTCCGTACGTGGTCGCACCA
ATGGAGGCCGAGGTATGCCGTTACCGTTTCCCGCAGCGTCATCATCGCGT
AATTTTTGTTCCTCTATCTCCGCTGTGTAACCCCCCCCCCCCCCTGCAAC
AGCATTCTGCTTCGTGTAACCACTTTACGTTTCCACCTCCTGATTTTTTT
TTCGTGTTGGCTGTACACCCTCCGAATGGCGTTTGCCCGTCCATCTGTCT
TGTCATGCGTTCTTCGCGTACCAACTCAAAAATCGCAGGCGCAGTGCTGC
GTGCTGGAGCAGCTGCGGCTGGTGGACGGGACGGTGACTGACGACAGCGA
CGCCTTCGCCTTCGGTGGAAGGGCCGTCTACAAGAACATCTTCAGCGAGA
GGAAGTTCGTCGAGGCCTACCTCCTGCCCGACGCGGAAAAGGTATGTCTA
CCGCACGTAAAGTGAGGCGTTTTTGGCTTATCATTAGTCGTACCGTACAT
CGCAATGTGGCGTTTTTGGCTTGGCGTTTGTCGTACAGCACATGAAAAGG
AGGCGGTTATGACTTGGTTGCTTCGGTACATGACGGAGCTCTGTGTAACC
GTCGTTGCGGGCTGTAGATGATAGGATTTTTCGGGTCATACGATGGTCTA
GTTAGCTGGTTCGTCGTTGAAGCTGTAGAGGCTGTTCTGGTCATACGATG
GCCTAGATACCTGCTTTGTTGTTAGGGGTAATGTTTAATAGATAATGCAT
GGGTTTTCCTGGAACCGGGATGAGACTGCAAACAGATATGTATCTTTCCT
TTTTGGCTGGTCGAGTCCACTGGGCTCGTCGAGTGAAAAACACGGCACCC
TCGTGAGCCTGTTAAGCTTTGGAAGCGTCGTCACTGTAAGCTGGCAGCCA
CCTGTGGGTTGTGGTCCTTCGTCCTCCTTTTGTTTTCATGTTTCATCACA
CCCCTTGATGACATTGTGCTCTTATGAGCCCACTCCGGAGGGATGACTGT
TGTATTCTTGTCCCTTACCCAGATCATTTAACGCAAGTAACGTATTGAAT
CTGTTTGGGTGAGACCTCCTGCACCGGCCTGTGGTCCTTCCCAGTACTTG
CTTTTGATTGTCTCATCTACCATATACTTCGAATAACTTTGACCACACAT
GCCTCTAAGCTAGGTCTCGCCCACCCAAACTTTCTTATTTTCCGCGGCGG
GCACACACAGAAAAGTCACATGTGAAGTCGGCCGACATCGGCAATGCGTT
TGAGTCAGCGTAGTAGCGCTCGCCACGGCTCCTCTTGGAACCCTAAGTCC
CTACACTAGTAGTGGCACCAACATATCGTTTTGCGGCGCTCTCGGTAGGC
CACCCGGCAACTTTCATGATAGCGTCCATCCAGCGACTGTGTAGCAGAAC
CCTCGACCCGAAAGGATACCGCAGTGTAGCGGTGTGGCAGTCCCGCCGCT
CACGAATGCCCGTGCAGGGCGGCCGTTATCTCAGCCGCCGTTACGGCACG
ACTGGGAACAGGTGCCCTTGGGACAGGTCCCAGCCAACGCGCTCCGCCGC
ACCGATGTTATGCCGTAACATTGCGCACCGCGCAAATAGAGACGGACAAA
CGACGTCCGGGCCTGCTTACGACGGCGTTCACGAAGTCACGGAGGGTCTT
TTCCAAACTCGAAGTGAAAGATGAGACCCTCCCTCGCTGGCAACCGCAGA
AGCTGCGATCCGATCGTGAAGGAGAGATCGTGGCCCCGTCGCATTGAGGC
TTACGCCAAGAACGGCTGCCTCTCGACCCCGGCGGCTGCGAGCTCACCGG
TGGGCCCACTTTGACCACCTCCACCCGGGCCGCCTCCCCAGCCTGACCGG
CAGACGGCCACGTTCGCGGATTCGACCACCGCGACTTACGGTGTGCCGTG
CTACACCGCGCTGGTGCCGTGTGCGGGGGATACGCTGGACCTTGGGCGGG
TCTTCGACCGCAACCGCGTGGGTTGCGATCAGAGGTGGTGATCTTTCGAT
CGGGGGAAGTGGCCACCCGACCGCCGCCTCTGCCGGAGGCAGAAGTGTAC
ACGAAGATTCTAGCGCGGGCTACTAAGGTGGCCGCCTCGCGTGCAGGCAA
CAAGTCGGTAGCATGTCGTCAGGCGGATGCGAGTATAGCAGTATGTACTC
GCCTCCGCCTGACGACATGCTACCGACGTGTCGCCTGAACGCGAGGCGGC
CACCTTCGTAGCCCGCGCTAGAATCTTCGTGTAGATCTCCGCCCCCCGAA
GAGGCGGCAACCGAGTGGCCACGCTGAGAACCACCTCCTCGACATTGCCC
TGATCACAACCCACGCGGTTGCGGTTGAAGGCCCAAGGTCCAGCGTAGCC
CCCGTGCACGGCACCAGCGCGGTGTAGCACGGCATAGCATAGGCCGCGGT
GGTCGCATCCGCGAACGTGGCCGTCTGGTGGTCAGGCTGGGGAGGCGGCC
CGGGTGGAGGTGGTGAAAGCGGTCCCACCGGTGAGCTCGCAGCCGCCGGG
GTCGAGAGGCAGCCGCCGCCGGGGCAGCAGTCGCTCAGGAAGCAGTCGCC
GGTTCCGCCGCGGCGGAACGCCGCGTGTTGCGAAGCGGCATGTTACTCCC
AAAACATTTTTTTCGCTCGTCGATAGCTCCGGGGTATTTCGAGAGAGAGA
GAGGGGACTGACAAGGTAATGTAGGGTCATTTAACAACATGATTCATGGG
ATATCTGACTCTTCCCCCAATTTCGTTCCGAAATCTGGATCCGCCGTTCC
AAATCCGAGATGACTTGTGTATTTGTTGTGAAAGATGGTGCATCGTGGGG
CGTTCGTTACGTCGACAGGATCTAGGAGTGGGCACGGATGAAGTAGTCGC
TCTCGCGCTGCTTTTGGGCAGCGACTACACGGAGGGAGTGAGGGGTGTGG
GCATCGTCAACGCAATGGAGGTGAAAGGCGGGGGGTCGGCGGATGTGTTG
GGGGGGGGGGGGTACCTGCACGCCTGCCAAGTTCTGGAGGCCACGGTTTT
GGTAACTTTTGTTTTTCGCGCGGAATACTCATGATCAAACTCTTTTGTGT
CCTCGTTGCTGTGTGACCCCCCGGCTGGTGCGTCTCGCAACAACCAAACG
GTGTAGACGGTTCGCCGCGTTCGCCGCTTCAGGTTTTGTGTGATCTGCAT
TCATGTTGCCGTCGAATGCGAACACTAAGTCCTCCCTCGAGAACGAACTG
CGCGGTGCGGTCGCAAGACAACGCATCCATACCCCCGCCTCGACTTGTCT
GATGCGATGAAACTCGTTCTGTGTGGTCAACGGAAAATAATTAACCAGGA
TTCCCCTTGATTTGAAAACCTCGGCACGATGCGACGTGATACGTAGGTGA
TCAACGCTTTTCCTTTGGAAGGGAAGGGTGCTCACCACGGCCTGAGCAAG
TTTAAGAAGTGGATCGATGGTTTCGATCCCCTCCTCGACCAGGTGCGATG
AAAAGAACACGGCGACAAAATGTTCTGTGTTGGTGTTGCCTAATGTCATG
TCGCGTTGTTGCTGTTGTTGTTGTTTTTGTTGTTTTTGTGGTTGTTGTTG
TTTCGCATGTATAGCCGTTGCGGTCTCTGCTCAGTACCTCTTAACATCCG
TAGGTCCAACTGACGCGGACGCCCTCGGTAGTCACAGGCCGGCTATATCC
CAACAGGGTAAACAGTATACGAGAAGTTCTCCGTGGTACGTATTGTCGAC
GGCTTGCACAGCTCTAAGAGCGGACGGACCGTCCCTGCCTTCGGCTACGC
CAACCAATCACGTCGTTTCCTTTGAAGCCGAAGGTGCTTCCGTGTCGTCT
GCTGTGCTCTCTAGGAGAGCTGTTGGTTTTCTAAAGATTTCGGATAGTGT
TTTGCTCGGTCGCCCAGAAACAATTTTTTACCATGAATGGTTACCACGAC
ATACACGAAGCTCGATATCTACGGAATGTGTCCCGTACTTTTCTGTCTGA
AGGCCAACCCCTCAGCGTTTCATGTTGAGCTCCTTTTATCTCCACCTCCG
TCGCTAAGTGCGTGGCTGTTTTTTGTGTTTTTTGTATTTTTTCTCGTCCT
GGATTTGACTTTTTTTTTTACCCAGGAGCTGGAAGGCTTGACGAAGCGCG
GTTCTCAGAAGGAGATCGACGGGCTATCGCTGGAGATGAAGTTTCACCTC
AAGCACAGGACGGCGCGAAACAGGTGCGAGGTGTTGTTGCTGCTGCTGTT
GCTCCTGCTGTTGCTGCTGCTGTTGTGTGTGTCGCACGCTGGGCTGGCTC
GCCGACGCGATGTATTTCGAGGTGGCAATTGTTTCCCGAAGGGGTACCTT
GAATCATAGTGGCTTACTCTACGGGAGGACCAGGCTGTTGAGTCCCGAGT
TTGTTGAACGGCAGCAGCTGTTTTGAAGGTATACAGGAAATTAAATTCAG
GCGTTTTTGACGGACAGCACTGCTCAGAGCATCTATCGAATCGATTCGTT
ATATCCGCAGTAGTGGACTGCCACCTACCTACTTTCGCGTTGAGGATTGA
TACCAAGCATCCCGGGAAGAAAGGATAGAGCGAAGAGCTAAATTCCCTGC
CTCTACCTTCGTCTTGTGACCCCGGCTGACACGTCAGACATGTATGCATA
CCGACAGTTGTAGACTGGAACCTTTATGTTGATGGGACAATGTCACGAGC
AAGCCGGACTGTTTGCTCGGCTTGAGTCCAAGCGTCTGAGAGGTCTTGCA
GTTACGGAGTGCGTCTGGTGGGCGCTGCAGCACGAGACAATCGTCGCTCT
CGACGGCTGGACGTGCACCAGACCAATCTTGCTGAACCAGGACACGATAT
TCTCCCACCTATTACCGCCGATGGCGGTTCCATGCACACGGCCACTTATT
CTCTTGTTGTAGTAATTCCGAACGGTTGCCTTGCTGACGAGACACTCGTT
GTCCGTGGCTGCTTTCGGGTGGTGCTGATGTTGCTAAGGTGGACCGTCCC
TGAGGGGTTCCCGAGCGAGGAGGTCATCAACGCCTACAACAATCCTCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7760:408..6656+

>mRNA_Ecto-sp13_S_contig7760.18999.1 ID=mRNA_Ecto-sp13_S_contig7760.18999.1|Name=mRNA_Ecto-sp13_S_contig7760.18999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=696bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7760:408..6656+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCACGTCGCACCTGGAGGGCATGGACGAGGACGAGCTGGAGGAGGA
GTCTGAGAAGCTGAAGCGGGAGGGCAACAAGGCGCAGCGTGACGCGGAGA
CTGTTACGGAGGAGATGAAGGAGGAGGTGATGGAACTCCTGAAGCTGTTC
GGTGTTCCGTACGTGGTCGCACCAATGGAGGCCGAGGCGCAGTGCTGCGT
GCTGGAGCAGCTGCGGCTGGTGGACGGGACGGTGACTGACGACAGCGACG
CCTTCGCCTTCGGTGGAAGGGCCGTCTACAAGAACATCTTCAGCGAGAGG
AAGTTCGTCGAGGCCTACCTCCTGCCCGACGCGGAAAAGGATCTAGGAGT
GGGCACGGATGAAGTAGTCGCTCTCGCGCTGCTTTTGGGCAGCGACTACA
CGGAGGGAGTGAGGGGTGTGGGCATCGTCAACGCAATGGAGGTGATCAAC
GCTTTTCCTTTGGAAGGGAAGGGTGCTCACCACGGCCTGAGCAAGTTTAA
GAAGTGGATCGATGGTTTCGATCCCCTCCTCGACCAGGAGCTGGAAGGCT
TGACGAAGCGCGGTTCTCAGAAGGAGATCGACGGGCTATCGCTGGAGATG
AAGTTTCACCTCAAGCACAGGACGGCGCGAAACAGGTGGACCGTCCCTGA
GGGGTTCCCGAGCGAGGAGGTCATCAACGCCTACAACAATCCTCAG
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