prot_Ecto-sp13_S_contig776.18998.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig776.18998.1
Unique Nameprot_Ecto-sp13_S_contig776.18998.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length48
Homology
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BLAST of mRNA_Ecto-sp13_S_contig776.18998.1 vs. uniprot
Match: A0A6H5KWA8_9PHAE (G_PROTEIN_RECEP_F2_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWA8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.740e-19
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0 
Query:    2 PDGTTGYGTGISDEQQRAIVHVAQACASLSFLGSAVIVVANFRFKQ 47
            PDGTTGYGTGISDEQQRAIV VAQACASLSFLGSAVIVVANFRFKQ
Sbjct:    4 PDGTTGYGTGISDEQQRAIVLVAQACASLSFLGSAVIVVANFRFKQ 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig776.18998.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWA8_9PHAE4.740e-1997.83G_PROTEIN_RECEP_F2_4 domain-containing protein n=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..48
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig776contigEcto-sp13_S_contig776:21545..21688 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig776.18998.1mRNA_Ecto-sp13_S_contig776.18998.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig776 21544..21688 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig776.18998.1 ID=prot_Ecto-sp13_S_contig776.18998.1|Name=mRNA_Ecto-sp13_S_contig776.18998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
HPDGTTGYGTGISDEQQRAIVHVAQACASLSFLGSAVIVVANFRFKQA
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