mRNA_Ecto-sp13_S_contig776.18998.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig776.18998.1
Unique NamemRNA_Ecto-sp13_S_contig776.18998.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig776.18998.1 vs. uniprot
Match: A0A6H5KWA8_9PHAE (G_PROTEIN_RECEP_F2_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWA8_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.740e-19
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    4 PDGTTGYGTGISDEQQRAIVHVAQACASLSFLGSAVIVVANFRFKQ 141
            PDGTTGYGTGISDEQQRAIV VAQACASLSFLGSAVIVVANFRFKQ
Sbjct:    4 PDGTTGYGTGISDEQQRAIVLVAQACASLSFLGSAVIVVANFRFKQ 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig776.18998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWA8_9PHAE4.740e-1997.83G_PROTEIN_RECEP_F2_4 domain-containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig776contigEcto-sp13_S_contig776:21544..21688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size145
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464046.1515493-CDS-Ecto-sp13_S_contig776:21544..216881681464046.1515493-CDS-Ecto-sp13_S_contig776:21544..21688Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig776 21545..21688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig776.18998.1prot_Ecto-sp13_S_contig776.18998.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig776 21545..21688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig776.18998.1

>prot_Ecto-sp13_S_contig776.18998.1 ID=prot_Ecto-sp13_S_contig776.18998.1|Name=mRNA_Ecto-sp13_S_contig776.18998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
HPDGTTGYGTGISDEQQRAIVHVAQACASLSFLGSAVIVVANFRFKQA
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mRNA from alignment at Ecto-sp13_S_contig776:21544..21688-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig776.18998.1 ID=mRNA_Ecto-sp13_S_contig776.18998.1|Name=mRNA_Ecto-sp13_S_contig776.18998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=145bp|location=Sequence derived from alignment at Ecto-sp13_S_contig776:21544..21688- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCGGACGGCACGACGGGCTATGGGACAGGGATATCGGACGAACAACA
GCGGGCAATCGTACATGTCGCGCAGGCTTGTGCTTCGTTGTCATTTCTGG
GCTCTGCGGTTATAGTCGTGGCTAACTTCCGCTTCAAGCAGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig776:21544..21688-

>mRNA_Ecto-sp13_S_contig776.18998.1 ID=mRNA_Ecto-sp13_S_contig776.18998.1|Name=mRNA_Ecto-sp13_S_contig776.18998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig776:21544..21688- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCGGACGGCACGACGGGCTATGGGACAGGGATATCGGACGAACAACA
GCGGGCAATCGTACATGTCGCGCAGGCTTGTGCTTCGTTGTCATTTCTGG
GCTCTGCGGTTATAGTCGTGGCTAACTTCCGCTTCAAGCAGGCA
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