mRNA_Ecto-sp13_S_contig776.18996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig776.18996.1
Unique NamemRNA_Ecto-sp13_S_contig776.18996.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A6H5KNV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV1_9PHAE)

HSP 1 Score: 711 bits (1834), Expect = 6.160e-256
Identity = 356/393 (90.59%), Postives = 372/393 (94.66%), Query Frame = 2
Query:   68 MPSCYERVLGTTLQDALLRDVELVDNPHEAKTFWLPADACPATSLEKIAKAIYDFHVANEQHI-SQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGSGTVEEGDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLSNISVPLCFDRPGDFVPVPVEKEKETQPSQEEDGVSIRGTKPSSMLLNVPLGPTLLLEVRTPTPERLSTGGFKENYSFALVYAEGSHSRISTVQAGEVGGAAHTTG 1243
            MPSCYERV+G TLQDALLRDVEL+DNPHEAKTFWLPADACPATSLE+IAKAIYDFHVAN+QH    +DSALTGPVGSTPSA AH  NIPS+DKPGV RRDASSHTG  ESGAEWWVQQREEGRHAS+GMPFHWDKDE+MLEQEGL+VCP+VSTVTYLTGYGAPTVVL+ARATGSGTV+EGDINQTF SYPALFKHLAFDGGFLHGVPEQLMRTGD RVSGK G DGGR+EA+GG+DNHGI SRTSLPSSNGTRR QGRMRVT LVNVWLSHKPKGITSLPADVAGSLSNISVPLCFDRPGDFVPVPVEKE+ETQPSQEEDG SIRGTKPSSMLLNVPLGPTLLLEVR PTPERLSTGGFKEN SFALVYAEGSHSRISTVQAGEVGGAAHTTG
Sbjct:    1 MPSCYERVMGMTLQDALLRDVELIDNPHEAKTFWLPADACPATSLERIAKAIYDFHVANKQHTHGHQDSALTGPVGSTPSAVAHSGNIPSRDKPGVVRRDASSHTGGVESGAEWWVQQREEGRHASVGMPFHWDKDEEMLEQEGLVVCPSVSTVTYLTGYGAPTVVLEARATGSGTVQEGDINQTFVSYPALFKHLAFDGGFLHGVPEQLMRTGDQRVSGKVGRDGGRREARGGNDNHGIRSRTSLPSSNGTRRRQGRMRVTFLVNVWLSHKPKGITSLPADVAGSLSNISVPLCFDRPGDFVPVPVEKEQETQPSQEEDGGSIRGTKPSSMLLNVPLGPTLLLEVRAPTPERLSTGGFKENDSFALVYAEGSHSRISTVQAGEVGGAAHTTG 393          
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: D7G6Z0_ECTSI (Putative LuxR domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z0_ECTSI)

HSP 1 Score: 451 bits (1160), Expect = 1.250e-155
Identity = 222/251 (88.45%), Postives = 232/251 (92.43%), Query Frame = 2
Query:   68 MPSCYERVLGTTLQDALLRDVELVDNPHEAKTFWLPADACPATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGSGTVEEGDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGT 820
            MPSCYERVLGTT QDALLRDVEL+DNPHEAKTFWLPADACPATSLEKIAKAI+DFHVAN+QHI Q+DSA TGPVGSTPSA AHGENIP +DKPGV RRD SS TGC ESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGL+VCPAVSTVTYLTGYGAPTVVL+ARATGS TVEEGDINQTF SYPALFKHLAFDGGFLHGVPEQLMRTGD R+SGK G DG R+EAQGG+DNHGI SR SL S NGT
Sbjct:    1 MPSCYERVLGTTRQDALLRDVELIDNPHEAKTFWLPADACPATSLEKIAKAIFDFHVANKQHIGQQDSAPTGPVGSTPSAVAHGENIPCRDKPGVVRRDTSSRTGCVESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLVVCPAVSTVTYLTGYGAPTVVLEARATGSRTVEEGDINQTFVSYPALFKHLAFDGGFLHGVPEQLMRTGDRRISGKVGRDGERREAQGGNDNHGIRSRISLLSLNGT 251          
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A7R9TJB1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TJB1_MICPS)

HSP 1 Score: 132 bits (331), Expect = 5.680e-31
Identity = 93/276 (33.70%), Postives = 122/276 (44.20%), Query Frame = 2
Query:  113 ALLRDVELVDNPHEAKTFWLPADACPATSLEKIAKAIYDFHV-ANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGSGTVEEG---DINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
            ALLRD          ++FWL ADA P  +LE +A+A++D HV A+     Q+ +A     G                       D     GC   GAEWW Q R         + FHWDKDE +++  G++V P +STVTYLT  GAPTVVL+  A  S    +G    I   F SYP   KH++FDG FLHG   +L R                                       T   +G  RVT LVNVWL +KP+GI + P +   +L+
Sbjct:   54 ALLRDAT---RAFVGESFWLAADAAPRCALESLARAVFDRHVPADVLRAFQQTNADEARFG-----------------------DGRFGGGC---GAEWWTQVRRVDDECREAVAFHWDKDEDLVDDFGVVVHPLISTVTYLTSSGAPTVVLEKTAPTSYAETDGFRGSIAGGFVSYPLAGKHVSFDGRFLHGASRELARP--------------------------------------TDVEEGYERVTFLVNVWLGYKPRGIDAFPEEAFDALT 262          
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: C1EIM3_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EIM3_MICCC)

HSP 1 Score: 115 bits (287), Expect = 2.270e-24
Identity = 86/290 (29.66%), Postives = 125/290 (43.10%), Query Frame = 2
Query:   71 PSCYERVLGTTLQDALLRDVELVD--NPHEAKTFWLPADACPATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLK-ARATGSGTVEE--GDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSL 925
            P  ++R  G +  +A  RDV   D       ++FWL A + P  +LE++A+ +++ HVA               +  T  A                          A+SGAEWWVQ R E       + FHWDKDE +++  G+ V PA+STVTYLT  GAPT+VL          VE+  G + Q + S+P   KH+AFDG  LHG P +L +                                           +G  RV+ LVN+WL+++P+ I   P +  G+L
Sbjct:   88 PESFDRYAGLSSPEA--RDVITEDCRKCFVGESFWLAAGSEPRCALEELARKVFELHVAG--------------IDGTWDA--------------------------AKSGAEWWVQVRHEDDGQKEAVSFHWDKDEDLVDDFGVNVHPAISTVTYLTTSGAPTLVLDHVPPMMYEDVEQFRGPVGQGYLSFPKRGKHIAFDGRLLHGAPRELAKP--------------------------------------RHVEKGYERVSFLVNIWLNYRPRAIEPFPEEEIGNL 297          
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A7S2XKR3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKR3_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.490e-23
Identity = 96/302 (31.79%), Postives = 130/302 (43.05%), Query Frame = 2
Query:  101 TLQDALLRDVELVDNPHEAKTFWLPADAC-PATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREE----GRHASL-----------GMPFHWDKDE--QMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARA---TG-----SGTVEEGDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
            T  D LL D EL D     +TFW+PA    P  +LE++A  I+  HV +E  +   D +L                                      SGAEWWVQ R      GR++ L           G+ FHWDKDE  ++L    + V P +STVTYLTG GAPT+VL  R    TG     + T +  ++ Q + S P   KHL+FDG +LH  P  LM +G               E Q   D     +  S         G+   RVT LVN+WL +KP  +   P  + G+++
Sbjct:   88 TRLDELLLDCELSDCGLLPRTFWMPATGVKPRCALEQMALEIFHQHVPDE-FLKTNDLSL--------------------------------------SGAEWWVQLRPSPPVTGRYSMLSKDDDDEMTKTGISFHWDKDEDLRLLTGGSMYVHPHISTVTYLTGLGAPTMVLNYRVDPMTGDWLDATATADGDEVVQGYLSCPQQGKHLSFDGRYLHAAPSDLMPSG-------------LFEEQCRIDTPSNETSDSDQKQQCKILGRRHRRVTFLVNIWLHYKPFNVNMFPDTMVGNMT 337          
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: C1N5G2_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N5G2_MICPC)

HSP 1 Score: 108 bits (271), Expect = 6.000e-22
Identity = 94/335 (28.06%), Postives = 123/335 (36.72%), Query Frame = 2
Query:  113 ALLRDVELVDNPHEAKTFWLPADACPATSLEKIAKAIYDFHV-ANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGS---------------------------------GTVEE-----------------------------GDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
            ALLRD          ++FWL ADA P  +LE +A+A++D HV A+     Q+ +A     G                       D     GC   GAEWW Q R         + FHWDKDE +++  G++V P +STVTYLT  GAPTVVL A    S                                  T ++                             G I   F SYP   KH++FDG FLHG   +L R                                       T   +G  RVT LVNVWL +KP+GI + P +   +L+
Sbjct:   85 ALLRDAT---RAFVGESFWLAADAAPRCALESLARAVFDRHVPADVLRAFQQTNADEARFG-----------------------DGRFGGGC---GAEWWTQVRRVDDECREAVAFHWDKDEDLVDDFGVVVHPLISTVTYLTSSGAPTVVLGASRVASVVSMSRFLLSTWMDNQPPPPHDVPRHRIFLSEPSTHDDAWPRVPPFSCLVPPEKTAPTSYAETDGFRGSIAGGFVSYPLAGKHVSFDGRFLHGASRELARP--------------------------------------TDVEEGYERVTFLVNVWLGYKPRGIDAFPEEAFDALT 352          
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: R1C727_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C727_EMIHU)

HSP 1 Score: 105 bits (262), Expect = 2.770e-21
Identity = 73/180 (40.56%), Postives = 90/180 (50.00%), Query Frame = 2
Query:  395 GAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARAT--------GSGTVEEGDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPAD 910
            GAE+WVQ+R  G HA   + +HWDKDE +L+  GL   P VSTVTYLT  GAPTVVL AR          G G+ E G I  T  SYP   + L FDG  LHG P QL                   EA+              P S+G R       +TLLVNVW+ H+P G+ + P++
Sbjct:  138 GAEFWVQRRAAGEHA---INWHWDKDESLLDSSGLTAHPLVSTVTYLTSGGAPTVVLDARTDEHGRLLPPGDGSWEGGAIAAT-VSYPKSRRLLRFDGRLLHGCPPQLAGP----------------EAE--------------PRSHGER-------LTLLVNVWVGHRPLGLPTAPSE 276          
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A7S4QU38_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QU38_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.090e-21
Identity = 80/268 (29.85%), Postives = 105/268 (39.18%), Query Frame = 2
Query:  161 TFWLPADACPATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQR---------EEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGSGTVEEG---DINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
            TFWL A   P   LEK+AK I+  H             +    GS  +   H           +   + S+  GC     EWWVQ R            + A  G+ FHWDKDE + +   + V P +STVTYLT  GAPT+V +        +++     I   F S+P   KHL+FDG  LHG P  L+R+ +                                           +RVT LVN+WL HKP GI   P    G  S
Sbjct:   66 TFWLSARDEPRCLLEKLAKDIFAHHAV---------VVMNNNKGSKRAKNHH-----------LGDMEFSNACGC-----EWWVQLRPSPNQKRINSNSKEAQRGIQFHWDKDETLRDVADVFVHPHLSTVTYLTDNGAPTLVFEESMPNERLLDKTAGTGIKGAFVSWPLRGKHLSFDGRLLHGAPSDLLRSSE----------------------------------------TDELRVTFLVNIWLYHKPLGIEKFPEAFLGRFS 268          
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: B8CEP3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEP3_THAPS)

HSP 1 Score: 105 bits (262), Expect = 5.950e-21
Identity = 97/299 (32.44%), Postives = 127/299 (42.47%), Query Frame = 2
Query:  110 DALLRDVELVDNPHEAKTFWLPA-DACPATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREE---GRHASL-------------GMPFHWDKDE--QMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARA---TGSGTVEEGDINQT--FASYPALFKHLAFDGGFLHGVPEQLMRTG--DGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
            DALL D E+ D     +TFW+ A D  P   LEK+A  ++  HV                    P    H    P                    SGAEWWVQ R     GR++ L             G+ FHWDKDE  ++L    + + P +STVTYLT  GAPT+VL  R    TG   +EEGD      F S+P   KHL+FD  +LH  P  LM  G  D +   +   D   +E +       +  R                RVT LVN+WL++KP  + S P  + G+LS
Sbjct:   95 DALLFDCEITDCGLLPRTFWVSASDVEPRCYLEKLALEVFHHHV--------------------PPPSPHFFYDPET------------------SGAEWWVQIRPSPPAGRYSQLADANDKDDDMGKTGISFHWDKDEDLRLLTGGSMYIHPHLSTVTYLTDLGAPTMVLSKRVNPMTGE-YLEEGDGENVDGFVSWPKRGKHLSFDARYLHAAPSDLMEKGLFDKQCKFEVSDDMDEKEKK-------VLQRR-------------HRRVTFLVNIWLNYKPFNVNSFPETMIGNLS 334          
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A7S3BD98_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BD98_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 2.020e-20
Identity = 75/203 (36.95%), Postives = 95/203 (46.80%), Query Frame = 2
Query:  386 AESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATG------SG----------TVEEGDINQTFA---SYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLSNIS 937
            A  GAE+WVQ+R  G   +    FHWDKDE + E   +++ PAVST+TYLT  GAPTV+L+ RAT       SG          ++E G    T A   SYP   K LAF GG LHGVP  L                    A+GG D+                      R+TLLVNVW+ H+P G+  LP      L+ +S
Sbjct:   24 ARCGAEFWVQRRAAGEDIT----FHWDKDEALREACDILIHPAVSTITYLTDGGAPTVLLEVRATAEKGQISSGAELVVGRRRKSIEPGGAPITAAAVVSYPRAGKLLAFSGGLLHGVPSSL--------------------AEGGGDS-------------------SAERLTLLVNVWVHHRPLGLCPLPRSFRSRLAAVS 183          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNV1_9PHAE6.160e-25690.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Z0_ECTSI1.250e-15588.45Putative LuxR domain protein n=1 Tax=Ectocarpus si... [more]
A0A7R9TJB1_MICPS5.680e-3133.70Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1EIM3_MICCC2.270e-2429.66Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A7S2XKR3_9STRA2.490e-2331.79Hypothetical protein n=1 Tax=Attheya septentrional... [more]
C1N5G2_MICPC6.000e-2228.06Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
R1C727_EMIHU2.770e-2140.56Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S4QU38_9STRA3.090e-2129.85Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8CEP3_THAPS5.950e-2132.44Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3BD98_9EUKA2.020e-2036.95Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig776contigEcto-sp13_S_contig776:9185..11954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score455.7
Seed ortholog evalue2.5e-125
Seed eggNOG ortholog2880.D7G6Z0
Model size1452
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2E8EV@1,2SEXB@2759
Cds size1308
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig776.18996.1prot_Ecto-sp13_S_contig776.18996.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig776 9252..11877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464045.9851012-UTR-Ecto-sp13_S_contig776:9184..92511681464045.9851012-UTR-Ecto-sp13_S_contig776:9184..9251Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig776 9185..9251 +
1681464046.0320787-UTR-Ecto-sp13_S_contig776:11877..119541681464046.0320787-UTR-Ecto-sp13_S_contig776:11877..11954Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig776 11878..11954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464045.9957879-CDS-Ecto-sp13_S_contig776:9251..93381681464045.9957879-CDS-Ecto-sp13_S_contig776:9251..9338Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig776 9252..9338 +
1681464046.0051067-CDS-Ecto-sp13_S_contig776:9824..102381681464046.0051067-CDS-Ecto-sp13_S_contig776:9824..10238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig776 9825..10238 +
1681464046.0144198-CDS-Ecto-sp13_S_contig776:10787..110391681464046.0144198-CDS-Ecto-sp13_S_contig776:10787..11039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig776 10788..11039 +
1681464046.0235252-CDS-Ecto-sp13_S_contig776:11322..118771681464046.0235252-CDS-Ecto-sp13_S_contig776:11322..11877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig776 11323..11877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig776.18996.1

>prot_Ecto-sp13_S_contig776.18996.1 ID=prot_Ecto-sp13_S_contig776.18996.1|Name=mRNA_Ecto-sp13_S_contig776.18996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=436bp
MPSCYERVLGTTLQDALLRDVELVDNPHEAKTFWLPADACPATSLEKIAK
AIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDA
SSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAV
STVTYLTGYGAPTVVLKARATGSGTVEEGDINQTFASYPALFKHLAFDGG
FLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNG
TRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLSNISVPLCFDRPGD
FVPVPVEKEKETQPSQEEDGVSIRGTKPSSMLLNVPLGPTLLLEVRTPTP
ERLSTGGFKENYSFALVYAEGSHSRISTVQAGEVGGAAHTTGSRRACDHY
RPEPCDVRRDEPTERVGRKHRDRFERSPRKRKHEM*
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mRNA from alignment at Ecto-sp13_S_contig776:9185..11954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig776.18996.1 ID=mRNA_Ecto-sp13_S_contig776.18996.1|Name=mRNA_Ecto-sp13_S_contig776.18996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2770bp|location=Sequence derived from alignment at Ecto-sp13_S_contig776:9185..11954+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAGCGGAACGTCTAAGTCGAGACAGGCACACAGGCACTGCTAGAGTAT GGCTGACGGGAACAACGATGCCATCTTGCTATGAGAGAGTGTTGGGCACG ACACTACAAGATGCCCTACTTCGGGATGTAGAACTCGTCGACAATCCACA TGAGGTATGCTACCACGTGTGTCCGCGAGAAAACAGCTGCATGTAGTGCA TCACAAAATATGTACGTACAGCTAAAAGCTGTGCTATATTTTTCAATCAA ATCCAGGGTTGACGTCCATTATCTCGAAAGAATAAGAGAAGGGCCTTTTT GCTTTGGTTGCAAGTCACCGAGTCATGGAGGACCTCGAGATATTTTCCGC CTCTCTCTGCTGTTGTTTGTGTAGGGAAGGCGGTATTGTCGGGCATTGTT TGAAACCCTTCCACGCAGTACACACGGATGTCTGCACACAAGAGCGAGAC ATCTTGTATTTTTGTATGTTGCCACGCGAACACGCGACTTTGGTACTTTT TTAGCAATCGTTGTTCAAGCCATCTCGCGAGACAACAGTCTCGACTTGGC GGCAAACCTTCACTGCGTTGCACGACTGCTGTTTGACCAACAAGGCTTAG GACTCGATAACAAGATGAGACCTCATGCATGTGCGCACAGGCGAAGACGT TCTGGCTGCCTGCCGACGCTTGTCCGGCAACCTCCTTGGAGAAGATCGCG AAGGCCATCTACGACTTTCACGTCGCCAATGAGCAACACATCAGCCAAAA AGATTCAGCCCTCACGGGTCCAGTTGGCTCCACGCCATCTGCAGAAGCAC ATGGCGAAAACATCCCATCCCAAGATAAGCCTGGCGTCGCCCGTCGTGAC GCAAGCTCCCATACCGGTTGTGCTGAGTCCGGGGCGGAGTGGTGGGTTCA GCAAAGAGAAGAAGGCCGTCATGCAAGCCTGGGGATGCCGTTCCATTGGG ATAAAGACGAGCAGATGCTGGAGCAAGAGGGGCTGATCGTGTGCCCGGCG GTGTCGACGGTGACGTACTTGACGGGGTACGGTGCGCCGACAGTTGTGCT TAAGGTACGAGATCGGGTACTCTTGACTTGAGGTACGAGTTCGGGTACTC TTGAGGTTGGGTCTCGTTAGTATCTTTCTTTCTTTGTGGATCTGAGCATT ATGGAGTGAAACGGCAGCTTGAGTACAGACAAAACTGTTTCTTTCAATTT TCCTAGATTTACGAATACCTCATCGAATGTCATGCTATGAAAAATATCGC CAATATCGCTCGCCGCGTTGTGGTCGCGCTGTGATCGGCTGTGCCCCACG TCCGCGTCGTACGGGCGGTTTGACTCATATTGAGGGCGCTGTATTCACGC CCGCTTGCTTCACAACAAACTGCTGAAGCGGTATCGCGAAAAAGGACTGA GCTACTGTTGTAGGTGCGTCGTAGTCCGTGTGGATTGTAATAGCGCCAAT CCTATTAATAGCCCGATGTTGTGGCCATATTCCCTCGACGCAATATCTTG TGACTACCTTTGCTCCAGCTACATGTGCTTAGGATGGACGCAAACAGGAG TCCATGACTAACGCTCGATTCCCTTGTCACGCTCCCCAACAATTCCCCAC AAGGCCCGTGCAACAGGCAGCGGGACGGTAGAAGAGGGAGATATCAACCA AACATTTGCGAGCTACCCGGCGCTCTTTAAACACCTCGCTTTCGACGGTG GCTTTTTGCACGGGGTGCCAGAGCAGCTCATGCGAACTGGAGATGGACGC GTCAGCGGCAAAGCAGGGGGGGACGGTGGGCGACAAGAGGCTCAGGGCGG CGACGACAACCACGGTATCCACTCCCGAACATCCCTTCCTTCTTCGAATG GCACGGTAAGTACTCTGCGGTAGCGGGATTCTCAACAAGGCAGCACGAGG ACAGCCAACAACGTATGACTTGCTTGCGAAGTTGGTGGACGTACGTCGCC CGTGCAAGGTGTGGTGGAATCAGCTGTAGAAGGCTTTACGCATTCGCAAG ATACATAGCTTCACACGAGAGTTTTTGTCCGAATCCTCCCTGACGCCCTA ACTCCCTTTTCGGCTGACAACCGTTTCGTTTTCATGTTACTAATACCTCT CCATTTCCTTTGTTCCTTGCGACGGTTCTATTACTCAGCGTCGTGGACAA GGGCGGATGCGTGTGACCCTCCTCGTGAACGTTTGGCTGTCTCACAAACC AAAGGGAATCACATCGCTTCCGGCAGATGTTGCAGGGTCTCTTAGCAACA TCAGCGTCCCGCTGTGCTTCGACAGGCCAGGTGATTTTGTCCCCGTGCCG GTTGAGAAGGAGAAGGAAACCCAACCTAGCCAGGAAGAGGATGGAGTGTC CATCCGGGGGACGAAACCGTCGAGCATGCTTTTGAACGTCCCGCTTGGGC CGACTCTTCTCCTTGAAGTGCGAACCCCTACACCTGAGAGGCTGTCGACG GGTGGTTTCAAAGAGAATTACTCGTTCGCGTTGGTGTATGCAGAGGGCAG CCATTCTCGCATCTCGACCGTGCAGGCGGGGGAGGTGGGCGGGGCTGCGC ATACGACGGGCTCACGGAGAGCATGTGACCACTACCGACCTGAGCCTTGC GATGTTAGAAGAGATGAGCCTACCGAAAGGGTTGGAAGGAAACACAGGGA CAGGTTCGAAAGATCACCACGAAAAAGAAAACACGAAATGTAAGGCTACT ATGTTTAGCGTTGCGAGTGGTAGGTTCCGGTGGTTGTGTGCACACACGCA CTCACGGTGAGGTGACCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig776:9185..11954+

>mRNA_Ecto-sp13_S_contig776.18996.1 ID=mRNA_Ecto-sp13_S_contig776.18996.1|Name=mRNA_Ecto-sp13_S_contig776.18996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig776:9185..11954+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCATCTTGCTATGAGAGAGTGTTGGGCACGACACTACAAGATGCCCT
ACTTCGGGATGTAGAACTCGTCGACAATCCACATGAGGCGAAGACGTTCT
GGCTGCCTGCCGACGCTTGTCCGGCAACCTCCTTGGAGAAGATCGCGAAG
GCCATCTACGACTTTCACGTCGCCAATGAGCAACACATCAGCCAAAAAGA
TTCAGCCCTCACGGGTCCAGTTGGCTCCACGCCATCTGCAGAAGCACATG
GCGAAAACATCCCATCCCAAGATAAGCCTGGCGTCGCCCGTCGTGACGCA
AGCTCCCATACCGGTTGTGCTGAGTCCGGGGCGGAGTGGTGGGTTCAGCA
AAGAGAAGAAGGCCGTCATGCAAGCCTGGGGATGCCGTTCCATTGGGATA
AAGACGAGCAGATGCTGGAGCAAGAGGGGCTGATCGTGTGCCCGGCGGTG
TCGACGGTGACGTACTTGACGGGGTACGGTGCGCCGACAGTTGTGCTTAA
GGCCCGTGCAACAGGCAGCGGGACGGTAGAAGAGGGAGATATCAACCAAA
CATTTGCGAGCTACCCGGCGCTCTTTAAACACCTCGCTTTCGACGGTGGC
TTTTTGCACGGGGTGCCAGAGCAGCTCATGCGAACTGGAGATGGACGCGT
CAGCGGCAAAGCAGGGGGGGACGGTGGGCGACAAGAGGCTCAGGGCGGCG
ACGACAACCACGGTATCCACTCCCGAACATCCCTTCCTTCTTCGAATGGC
ACGCGTCGTGGACAAGGGCGGATGCGTGTGACCCTCCTCGTGAACGTTTG
GCTGTCTCACAAACCAAAGGGAATCACATCGCTTCCGGCAGATGTTGCAG
GGTCTCTTAGCAACATCAGCGTCCCGCTGTGCTTCGACAGGCCAGGTGAT
TTTGTCCCCGTGCCGGTTGAGAAGGAGAAGGAAACCCAACCTAGCCAGGA
AGAGGATGGAGTGTCCATCCGGGGGACGAAACCGTCGAGCATGCTTTTGA
ACGTCCCGCTTGGGCCGACTCTTCTCCTTGAAGTGCGAACCCCTACACCT
GAGAGGCTGTCGACGGGTGGTTTCAAAGAGAATTACTCGTTCGCGTTGGT
GTATGCAGAGGGCAGCCATTCTCGCATCTCGACCGTGCAGGCGGGGGAGG
TGGGCGGGGCTGCGCATACGACGGGCTCACGGAGAGCATGTGACCACTAC
CGACCTGAGCCTTGCGATGTTAGAAGAGATGAGCCTACCGAAAGGGTTGG
AAGGAAACACAGGGACAGGTTCGAAAGATCACCACGAAAAAGAAAACACG
AAATGTAA
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