mRNA_Ecto-sp13_S_contig776.18996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A6H5KNV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV1_9PHAE) HSP 1 Score: 711 bits (1834), Expect = 6.160e-256 Identity = 356/393 (90.59%), Postives = 372/393 (94.66%), Query Frame = 2
Query: 68 MPSCYERVLGTTLQDALLRDVELVDNPHEAKTFWLPADACPATSLEKIAKAIYDFHVANEQHI-SQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGSGTVEEGDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLSNISVPLCFDRPGDFVPVPVEKEKETQPSQEEDGVSIRGTKPSSMLLNVPLGPTLLLEVRTPTPERLSTGGFKENYSFALVYAEGSHSRISTVQAGEVGGAAHTTG 1243
MPSCYERV+G TLQDALLRDVEL+DNPHEAKTFWLPADACPATSLE+IAKAIYDFHVAN+QH +DSALTGPVGSTPSA AH NIPS+DKPGV RRDASSHTG ESGAEWWVQQREEGRHAS+GMPFHWDKDE+MLEQEGL+VCP+VSTVTYLTGYGAPTVVL+ARATGSGTV+EGDINQTF SYPALFKHLAFDGGFLHGVPEQLMRTGD RVSGK G DGGR+EA+GG+DNHGI SRTSLPSSNGTRR QGRMRVT LVNVWLSHKPKGITSLPADVAGSLSNISVPLCFDRPGDFVPVPVEKE+ETQPSQEEDG SIRGTKPSSMLLNVPLGPTLLLEVR PTPERLSTGGFKEN SFALVYAEGSHSRISTVQAGEVGGAAHTTG
Sbjct: 1 MPSCYERVMGMTLQDALLRDVELIDNPHEAKTFWLPADACPATSLERIAKAIYDFHVANKQHTHGHQDSALTGPVGSTPSAVAHSGNIPSRDKPGVVRRDASSHTGGVESGAEWWVQQREEGRHASVGMPFHWDKDEEMLEQEGLVVCPSVSTVTYLTGYGAPTVVLEARATGSGTVQEGDINQTFVSYPALFKHLAFDGGFLHGVPEQLMRTGDQRVSGKVGRDGGRREARGGNDNHGIRSRTSLPSSNGTRRRQGRMRVTFLVNVWLSHKPKGITSLPADVAGSLSNISVPLCFDRPGDFVPVPVEKEQETQPSQEEDGGSIRGTKPSSMLLNVPLGPTLLLEVRAPTPERLSTGGFKENDSFALVYAEGSHSRISTVQAGEVGGAAHTTG 393
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: D7G6Z0_ECTSI (Putative LuxR domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z0_ECTSI) HSP 1 Score: 451 bits (1160), Expect = 1.250e-155 Identity = 222/251 (88.45%), Postives = 232/251 (92.43%), Query Frame = 2
Query: 68 MPSCYERVLGTTLQDALLRDVELVDNPHEAKTFWLPADACPATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGSGTVEEGDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGT 820
MPSCYERVLGTT QDALLRDVEL+DNPHEAKTFWLPADACPATSLEKIAKAI+DFHVAN+QHI Q+DSA TGPVGSTPSA AHGENIP +DKPGV RRD SS TGC ESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGL+VCPAVSTVTYLTGYGAPTVVL+ARATGS TVEEGDINQTF SYPALFKHLAFDGGFLHGVPEQLMRTGD R+SGK G DG R+EAQGG+DNHGI SR SL S NGT
Sbjct: 1 MPSCYERVLGTTRQDALLRDVELIDNPHEAKTFWLPADACPATSLEKIAKAIFDFHVANKQHIGQQDSAPTGPVGSTPSAVAHGENIPCRDKPGVVRRDTSSRTGCVESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLVVCPAVSTVTYLTGYGAPTVVLEARATGSRTVEEGDINQTFVSYPALFKHLAFDGGFLHGVPEQLMRTGDRRISGKVGRDGERREAQGGNDNHGIRSRISLLSLNGT 251
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A7R9TJB1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TJB1_MICPS) HSP 1 Score: 132 bits (331), Expect = 5.680e-31 Identity = 93/276 (33.70%), Postives = 122/276 (44.20%), Query Frame = 2
Query: 113 ALLRDVELVDNPHEAKTFWLPADACPATSLEKIAKAIYDFHV-ANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGSGTVEEG---DINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
ALLRD ++FWL ADA P +LE +A+A++D HV A+ Q+ +A G D GC GAEWW Q R + FHWDKDE +++ G++V P +STVTYLT GAPTVVL+ A S +G I F SYP KH++FDG FLHG +L R T +G RVT LVNVWL +KP+GI + P + +L+
Sbjct: 54 ALLRDAT---RAFVGESFWLAADAAPRCALESLARAVFDRHVPADVLRAFQQTNADEARFG-----------------------DGRFGGGC---GAEWWTQVRRVDDECREAVAFHWDKDEDLVDDFGVVVHPLISTVTYLTSSGAPTVVLEKTAPTSYAETDGFRGSIAGGFVSYPLAGKHVSFDGRFLHGASRELARP--------------------------------------TDVEEGYERVTFLVNVWLGYKPRGIDAFPEEAFDALT 262
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: C1EIM3_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EIM3_MICCC) HSP 1 Score: 115 bits (287), Expect = 2.270e-24 Identity = 86/290 (29.66%), Postives = 125/290 (43.10%), Query Frame = 2
Query: 71 PSCYERVLGTTLQDALLRDVELVD--NPHEAKTFWLPADACPATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLK-ARATGSGTVEE--GDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSL 925
P ++R G + +A RDV D ++FWL A + P +LE++A+ +++ HVA + T A A+SGAEWWVQ R E + FHWDKDE +++ G+ V PA+STVTYLT GAPT+VL VE+ G + Q + S+P KH+AFDG LHG P +L + +G RV+ LVN+WL+++P+ I P + G+L
Sbjct: 88 PESFDRYAGLSSPEA--RDVITEDCRKCFVGESFWLAAGSEPRCALEELARKVFELHVAG--------------IDGTWDA--------------------------AKSGAEWWVQVRHEDDGQKEAVSFHWDKDEDLVDDFGVNVHPAISTVTYLTTSGAPTLVLDHVPPMMYEDVEQFRGPVGQGYLSFPKRGKHIAFDGRLLHGAPRELAKP--------------------------------------RHVEKGYERVSFLVNIWLNYRPRAIEPFPEEEIGNL 297
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A7S2XKR3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKR3_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.490e-23 Identity = 96/302 (31.79%), Postives = 130/302 (43.05%), Query Frame = 2
Query: 101 TLQDALLRDVELVDNPHEAKTFWLPADAC-PATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREE----GRHASL-----------GMPFHWDKDE--QMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARA---TG-----SGTVEEGDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
T D LL D EL D +TFW+PA P +LE++A I+ HV +E + D +L SGAEWWVQ R GR++ L G+ FHWDKDE ++L + V P +STVTYLTG GAPT+VL R TG + T + ++ Q + S P KHL+FDG +LH P LM +G E Q D + S G+ RVT LVN+WL +KP + P + G+++
Sbjct: 88 TRLDELLLDCELSDCGLLPRTFWMPATGVKPRCALEQMALEIFHQHVPDE-FLKTNDLSL--------------------------------------SGAEWWVQLRPSPPVTGRYSMLSKDDDDEMTKTGISFHWDKDEDLRLLTGGSMYVHPHISTVTYLTGLGAPTMVLNYRVDPMTGDWLDATATADGDEVVQGYLSCPQQGKHLSFDGRYLHAAPSDLMPSG-------------LFEEQCRIDTPSNETSDSDQKQQCKILGRRHRRVTFLVNIWLHYKPFNVNMFPDTMVGNMT 337
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: C1N5G2_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N5G2_MICPC) HSP 1 Score: 108 bits (271), Expect = 6.000e-22 Identity = 94/335 (28.06%), Postives = 123/335 (36.72%), Query Frame = 2
Query: 113 ALLRDVELVDNPHEAKTFWLPADACPATSLEKIAKAIYDFHV-ANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGS---------------------------------GTVEE-----------------------------GDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
ALLRD ++FWL ADA P +LE +A+A++D HV A+ Q+ +A G D GC GAEWW Q R + FHWDKDE +++ G++V P +STVTYLT GAPTVVL A S T ++ G I F SYP KH++FDG FLHG +L R T +G RVT LVNVWL +KP+GI + P + +L+
Sbjct: 85 ALLRDAT---RAFVGESFWLAADAAPRCALESLARAVFDRHVPADVLRAFQQTNADEARFG-----------------------DGRFGGGC---GAEWWTQVRRVDDECREAVAFHWDKDEDLVDDFGVVVHPLISTVTYLTSSGAPTVVLGASRVASVVSMSRFLLSTWMDNQPPPPHDVPRHRIFLSEPSTHDDAWPRVPPFSCLVPPEKTAPTSYAETDGFRGSIAGGFVSYPLAGKHVSFDGRFLHGASRELARP--------------------------------------TDVEEGYERVTFLVNVWLGYKPRGIDAFPEEAFDALT 352
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: R1C727_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C727_EMIHU) HSP 1 Score: 105 bits (262), Expect = 2.770e-21 Identity = 73/180 (40.56%), Postives = 90/180 (50.00%), Query Frame = 2
Query: 395 GAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARAT--------GSGTVEEGDINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPAD 910
GAE+WVQ+R G HA + +HWDKDE +L+ GL P VSTVTYLT GAPTVVL AR G G+ E G I T SYP + L FDG LHG P QL EA+ P S+G R +TLLVNVW+ H+P G+ + P++
Sbjct: 138 GAEFWVQRRAAGEHA---INWHWDKDESLLDSSGLTAHPLVSTVTYLTSGGAPTVVLDARTDEHGRLLPPGDGSWEGGAIAAT-VSYPKSRRLLRFDGRLLHGCPPQLAGP----------------EAE--------------PRSHGER-------LTLLVNVWVGHRPLGLPTAPSE 276
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A7S4QU38_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QU38_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.090e-21 Identity = 80/268 (29.85%), Postives = 105/268 (39.18%), Query Frame = 2
Query: 161 TFWLPADACPATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQR---------EEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATGSGTVEEG---DINQTFASYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
TFWL A P LEK+AK I+ H + GS + H + + S+ GC EWWVQ R + A G+ FHWDKDE + + + V P +STVTYLT GAPT+V + +++ I F S+P KHL+FDG LHG P L+R+ + +RVT LVN+WL HKP GI P G S
Sbjct: 66 TFWLSARDEPRCLLEKLAKDIFAHHAV---------VVMNNNKGSKRAKNHH-----------LGDMEFSNACGC-----EWWVQLRPSPNQKRINSNSKEAQRGIQFHWDKDETLRDVADVFVHPHLSTVTYLTDNGAPTLVFEESMPNERLLDKTAGTGIKGAFVSWPLRGKHLSFDGRLLHGAPSDLLRSSE----------------------------------------TDELRVTFLVNIWLYHKPLGIEKFPEAFLGRFS 268
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: B8CEP3_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEP3_THAPS) HSP 1 Score: 105 bits (262), Expect = 5.950e-21 Identity = 97/299 (32.44%), Postives = 127/299 (42.47%), Query Frame = 2
Query: 110 DALLRDVELVDNPHEAKTFWLPA-DACPATSLEKIAKAIYDFHVANEQHISQKDSALTGPVGSTPSAEAHGENIPSQDKPGVARRDASSHTGCAESGAEWWVQQREE---GRHASL-------------GMPFHWDKDE--QMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARA---TGSGTVEEGDINQT--FASYPALFKHLAFDGGFLHGVPEQLMRTG--DGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLS 928
DALL D E+ D +TFW+ A D P LEK+A ++ HV P H P SGAEWWVQ R GR++ L G+ FHWDKDE ++L + + P +STVTYLT GAPT+VL R TG +EEGD F S+P KHL+FD +LH P LM G D + + D +E + + R RVT LVN+WL++KP + S P + G+LS
Sbjct: 95 DALLFDCEITDCGLLPRTFWVSASDVEPRCYLEKLALEVFHHHV--------------------PPPSPHFFYDPET------------------SGAEWWVQIRPSPPAGRYSQLADANDKDDDMGKTGISFHWDKDEDLRLLTGGSMYIHPHLSTVTYLTDLGAPTMVLSKRVNPMTGE-YLEEGDGENVDGFVSWPKRGKHLSFDARYLHAAPSDLMEKGLFDKQCKFEVSDDMDEKEKK-------VLQRR-------------HRRVTFLVNIWLNYKPFNVNSFPETMIGNLS 334
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Match: A0A7S3BD98_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BD98_9EUKA) HSP 1 Score: 100 bits (249), Expect = 2.020e-20 Identity = 75/203 (36.95%), Postives = 95/203 (46.80%), Query Frame = 2
Query: 386 AESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLIVCPAVSTVTYLTGYGAPTVVLKARATG------SG----------TVEEGDINQTFA---SYPALFKHLAFDGGFLHGVPEQLMRTGDGRVSGKAGGDGGRQEAQGGDDNHGIHSRTSLPSSNGTRRGQGRMRVTLLVNVWLSHKPKGITSLPADVAGSLSNIS 937
A GAE+WVQ+R G + FHWDKDE + E +++ PAVST+TYLT GAPTV+L+ RAT SG ++E G T A SYP K LAF GG LHGVP L A+GG D+ R+TLLVNVW+ H+P G+ LP L+ +S
Sbjct: 24 ARCGAEFWVQRRAAGEDIT----FHWDKDEALREACDILIHPAVSTITYLTDGGAPTVLLEVRATAEKGQISSGAELVVGRRRKSIEPGGAPITAAAVVSYPRAGKLLAFSGGLLHGVPSSL--------------------AEGGGDS-------------------SAERLTLLVNVWVHHRPLGLCPLPRSFRSRLAAVS 183 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig776.18996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig776.18996.1 >prot_Ecto-sp13_S_contig776.18996.1 ID=prot_Ecto-sp13_S_contig776.18996.1|Name=mRNA_Ecto-sp13_S_contig776.18996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=436bp MPSCYERVLGTTLQDALLRDVELVDNPHEAKTFWLPADACPATSLEKIAKback to top mRNA from alignment at Ecto-sp13_S_contig776:9185..11954+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig776.18996.1 ID=mRNA_Ecto-sp13_S_contig776.18996.1|Name=mRNA_Ecto-sp13_S_contig776.18996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2770bp|location=Sequence derived from alignment at Ecto-sp13_S_contig776:9185..11954+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig776:9185..11954+ >mRNA_Ecto-sp13_S_contig776.18996.1 ID=mRNA_Ecto-sp13_S_contig776.18996.1|Name=mRNA_Ecto-sp13_S_contig776.18996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1308bp|location=Sequence derived from alignment at Ecto-sp13_S_contig776:9185..11954+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |