prot_Ecto-sp13_S_contig12265.1899.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12265.1899.1
Unique Nameprot_Ecto-sp13_S_contig12265.1899.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length92
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12265.1899.1 vs. uniprot
Match: D7FMA7_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA7_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 4.870e-58
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0 
Query:    1 MVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRKTLDFQGWLAEREKAEV 91
            MVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRK LDFQGWLAER+KAEV
Sbjct:  189 MVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRKPLDFQGWLAERQKAEV 279
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BLAST of mRNA_Ecto-sp13_S_contig12265.1899.1 vs. uniprot
Match: D7FMA8_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA8_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 9.120e-28
Identity = 48/91 (52.75%), Postives = 66/91 (72.53%), Query Frame = 0 
Query:    1 MVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRKTLDFQGWLAEREKAEV 91
            MV+ S+QG+LPVR+GS+N+CYPP+FFR +W +I+ FLHERV+ R R I G D +VL  L   V P+ LPPP+G K  +F  WLAE+ + + 
Sbjct:  148 MVMQSLQGALPVRIGSINICYPPTFFRVVWGIINPFLHERVKRRVRVIPGTDAEVLGVLGAIVPPDGLPPPMGPKPKEFSAWLAEQAQKDA 238
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BLAST of mRNA_Ecto-sp13_S_contig12265.1899.1 vs. uniprot
Match: A0A7S2KWX8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWX8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 6.050e-8
Identity = 32/95 (33.68%), Postives = 54/95 (56.84%), Query Frame = 0 
Query:    1 MVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPEN-LPPPIGRKTL----DFQGWLAEREKAE 90
            M  DS++  LP+R+GS  +C+PP+FF  I+ ++  FL   +R R     G DE VL+ L     P + +P  +G + +     ++ WL ER+++E
Sbjct:  192 MFSDSMKRCLPIRIGSFQVCHPPTFFVIIFPILKLFLGAYLRNRICVNGGSDEKVLKKLNSCGIPSSSIPEELGGEVVVDNETWKAWLKERKQSE 286
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12265.1899.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMA7_ECTSI4.870e-5897.80CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
D7FMA8_ECTSI9.120e-2852.75CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2KWX8_9STRA6.050e-833.68Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036865CRAL-TRIO lipid binding domain superfamilyGENE3D3.40.525.10coord: 1..88
e-value: 2.0E-11
score: 45.6
IPR036865CRAL-TRIO lipid binding domain superfamilySUPERFAMILY52087CRAL/TRIO domaincoord: 2..73
IPR001251CRAL-TRIO lipid binding domainPFAMPF00650CRAL_TRIOcoord: 2..70
e-value: 1.3E-8
score: 34.7
IPR001251CRAL-TRIO lipid binding domainPROSITEPS50191CRAL_TRIOcoord: 1..80
score: 9.627
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12265contigEcto-sp13_S_contig12265:892..1978 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12265.1899.1mRNA_Ecto-sp13_S_contig12265.1899.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12265 868..3284 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12265.1899.1 ID=prot_Ecto-sp13_S_contig12265.1899.1|Name=mRNA_Ecto-sp13_S_contig12265.1899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYG
EDEDVLEALTGTVAPENLPPPIGRKTLDFQGWLAEREKAEV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036865CRAL-TRIO_dom_sf
IPR001251CRAL-TRIO_dom