mRNA_Ecto-sp13_S_contig776.18994.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig776.18994.1
Unique NamemRNA_Ecto-sp13_S_contig776.18994.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.180e-39
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1
Query:    7 DYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGHLEV 222
            DYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGHLEV
Sbjct:  170 DYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGHLEV 241          
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Match: A0A0H5R7J4_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7J4_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 1.770e-20
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 VQDYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGHLEV 222
            + D LKD KACL NDF+RYKR+ +++R DLPD++++  E HSLQ+FLGNP+HP  LII  LR  I+ I G+ EV
Sbjct:  173 ILDALKDMKACLQNDFARYKRSFSNIRADLPDSDAVADEIHSLQMFLGNPQHPNDLIITRLRSEIQKISGYEEV 246          
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Match: A0A3P3Y4Q8_PLABS (DUF1394 domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y4Q8_PLABS)

HSP 1 Score: 88.6 bits (218), Expect = 1.010e-18
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 1
Query:    1 VQDYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGHLEV 222
            + D LKD KAC  NDF+RYKR+ +++R ++PD++S+  + H+LQ+FLGNP+HP  LII  LR  I+ I G+ EV
Sbjct:  172 ILDSLKDMKACFQNDFARYKRSFSNIRAEIPDSDSIADDIHNLQMFLGNPQHPNDLIITHLRTEIQKISGYQEV 245          
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Match: F0YL26_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL26_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 1.380e-18
Identity = 41/72 (56.94%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    7 DYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGHLEV 222
            D LKD KA LT DFSRY R L ++R +LP+ + L QE+H LQLFL N ++PK LI + LRD++K IPGH E+
Sbjct:  171 DNLKDMKASLTTDFSRYNRVLQALRAELPNGDQLAQEKHKLQLFLSNFQYPKSLIFHNLRDALKKIPGHEEI 242          
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Match: A0A8J2T1L4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1L4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.230e-17
Identity = 40/69 (57.97%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    7 DYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGH 213
            D LKD KA LT DFSRY R L  +R DLP+ +SL +E+H LQLFL N K+   LI+N LRD++K IP H
Sbjct:  176 DNLKDIKASLTTDFSRYNRVLQVLRMDLPNGDSLAREKHKLQLFLSNFKYSNSLILNNLRDALKRIPNH 244          
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Match: F0YQA9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQA9_AURAN)

HSP 1 Score: 82.0 bits (201), Expect = 1.910e-16
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    7 DYLKDTKACLTNDFSRYKRA------LTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGHLEV 222
            D LKD KA LT DFSRY R       L ++R +LP+ + L QE+H LQLFL N ++PK LI + LRD++K IPGH E+
Sbjct:  170 DNLKDMKASLTTDFSRYNRVELSVAVLQALRAELPNGDQLAQEKHKLQLFLSNFRYPKSLIFHNLRDALKKIPGHEEI 247          
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Match: A0A067CPM3_SAPPC (DUF1394 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CPM3_SAPPC)

HSP 1 Score: 62.0 bits (149), Expect = 2.220e-9
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   13 LKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAI 204
            L D K+ L NDFS +KRA  S++ D+PDA ++  E  +LQ FLG+  HPK  I N LR +I  +
Sbjct:  137 LYDIKSGLRNDFSVFKRAFQSIKDDMPDAATIASELQTLQEFLGSASHPKGYIFNALRHNIHNV 200          
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Match: A0A0M0K1F5_9EUKA (Cytoplasmic fmr1-interacting protein 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K1F5_9EUKA)

HSP 1 Score: 57.0 bits (136), Expect = 1.300e-7
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    7 DYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGH 213
            D LKDTKACL NDFS YKRA    R DLPDA+    E   LQ  L +    + +++  LR S++ + G+
Sbjct:  180 DALKDTKACLNNDFSVYKRAFQHCRADLPDAQQKDAENTLLQQMLPS----RMVMLTALRASVQKLGGY 244          
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Match: R1D892_EMIHU (DUF1394 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D892_EMIHU)

HSP 1 Score: 51.2 bits (121), Expect = 1.410e-5
Identity = 30/72 (41.67%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    1 VQDYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNPKHPKQLIINTLRDSIKAIPGHL 216
            V D +KDTKACL+ND S YKRA    R D+ +A+++    ++LQLFL      K  +++ L+    A P HL
Sbjct:  171 VLDSIKDTKACLSNDLSVYKRAFAHCRADVTNADAIFNSNNALQLFLAE----KGPLLSALK---AARPRHL 235          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig776.18994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G6Y8_ECTSI1.180e-39100.00UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0H5R7J4_9EUKA1.770e-2056.76Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A3P3Y4Q8_PLABS1.010e-1851.35DUF1394 domain-containing protein n=2 Tax=Plasmodi... [more]
F0YL26_AURAN1.380e-1856.94Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2T1L4_9STRA4.230e-1757.97Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YQA9_AURAN1.910e-1652.56Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A067CPM3_SAPPC2.220e-946.88DUF1394 domain-containing protein n=2 Tax=Saproleg... [more]
A0A0M0K1F5_9EUKA1.300e-744.93Cytoplasmic fmr1-interacting protein 1 n=1 Tax=Chr... [more]
R1D892_EMIHU1.410e-541.67DUF1394 domain-containing protein n=1 Tax=Emiliani... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig776contigEcto-sp13_S_contig776:9..607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score149.8
Seed ortholog evalue5.3e-34
Seed eggNOG ortholog2880.D7G6Y8
Model size240
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006928,GO:0008064,GO:0008150,GO:0009653,GO:0009987,GO:0010639,GO:0016043,GO:0030054,GO:0030175,GO:0030832,GO:0030834,GO:0030835,GO:0031143,GO:0031209,GO:0031252,GO:0032433,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0040011,GO:0042995,GO:0043242,GO:0043244,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098858,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
Exons2
EggNOG free text desc.positive regulation of neurotrophin TRK receptor signaling pathway
EggNOG OGsKOG3534@1,KOG3534@2759
Cds size240
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464045.8571255-CDS-Ecto-sp13_S_contig776:8..1341681464045.8571255-CDS-Ecto-sp13_S_contig776:8..134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig776 9..134 -
1681464045.8703341-CDS-Ecto-sp13_S_contig776:493..6071681464045.8703341-CDS-Ecto-sp13_S_contig776:493..607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig776 494..607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig776.18994.1prot_Ecto-sp13_S_contig776.18994.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig776 9..607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig776.18994.1

>prot_Ecto-sp13_S_contig776.18994.1 ID=prot_Ecto-sp13_S_contig776.18994.1|Name=mRNA_Ecto-sp13_S_contig776.18994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=80bp
VQDYLKDTKACLTNDFSRYKRALTSVRQDLPDAESLGQEQHSLQLFLGNP
KHPKQLIINTLRDSIKAIPGHLEVTDSRR*
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mRNA from alignment at Ecto-sp13_S_contig776:9..607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig776.18994.1 ID=mRNA_Ecto-sp13_S_contig776.18994.1|Name=mRNA_Ecto-sp13_S_contig776.18994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=599bp|location=Sequence derived from alignment at Ecto-sp13_S_contig776:9..607- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCAGGACTACCTGAAGGACACGAAGGCGTGTCTGACCAACGACTTCTC GAGGTACAAGCGTGCCTTGACCAGCGTCAGGCAGGACCTCCCGGACGCGG AAAGCCTAGGACAGGTAAGAAGACGAGGACAGCTCTGTATGTCTGTAAAC CCTTGTTTTTCGCTGTGGGTGTGCTGGTGTTATAGCATAGATCTCGCCGC CTATGTTAAGCGCAGCTTTAGCTTTCCGCCTCGATTTCCTGTTGGTGATA CTGCTGTAGCTTATATCACAAACAGCAGGTTGTTGATGACAACATGTTGT TCTTGTTGGTTTTTGTTAATGTTCTTTAACAAACCTTGCCCGTTTCATGG GCCCATGTCTGGGTGTAGTAGGTCGACGAGTGTCAATGGTTCAATCATTG TGTGTTTCGTGACCCCGGGGTTGATGGATAGAAGTACGACGCACGTGTCT TGGTGGTCTTTTGGTTCGTGCAGGAGCAACACTCGCTGCAGCTCTTCTTG GGGAACCCGAAGCATCCGAAGCAGCTCATCATCAACACGCTGAGAGACAG CATCAAGGCCATCCCTGGACACCTCGAGGTGACAGATTCAAGGCGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig776:9..607-

>mRNA_Ecto-sp13_S_contig776.18994.1 ID=mRNA_Ecto-sp13_S_contig776.18994.1|Name=mRNA_Ecto-sp13_S_contig776.18994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig776:9..607- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCAGGACTACCTGAAGGACACGAAGGCGTGTCTGACCAACGACTTCTC
GAGGTACAAGCGTGCCTTGACCAGCGTCAGGCAGGACCTCCCGGACGCGG
AAAGCCTAGGACAGGAGCAACACTCGCTGCAGCTCTTCTTGGGGAACCCG
AAGCATCCGAAGCAGCTCATCATCAACACGCTGAGAGACAGCATCAAGGC
CATCCCTGGACACCTCGAGGTGACAGATTCAAGGCGATAG
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