mRNA_Ecto-sp13_S_contig7759.18992.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7759.18992.1
Unique NamemRNA_Ecto-sp13_S_contig7759.18992.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: A0A6H5JL54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL54_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 6.480e-19
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:    3 IASQTEHPGKPWVRQTAGRDGRYPTTSGDSEGEDGDGEKKNDVSQGDM 146
            IAS+TEHPGKPWV +TAGRDGR+PTTSGDSEGEDGDGEKKNDVSQG++
Sbjct:  311 IASETEHPGKPWVWETAGRDGRHPTTSGDSEGEDGDGEKKNDVSQGEV 358
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: A0A6H5JS32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS32_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 4.730e-18
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:    3 IASQTEHPGKPWVRQTAGRDGRYPTTSGDSEGEDGDGEKKNDVSQGDM 146
            IAS+TEHP KPWV +TAGRDGR+PTTSGDSEGEDGDGEKKNDVSQG++
Sbjct:  201 IASETEHPRKPWVWETAGRDGRHPTTSGDSEGEDGDGEKKNDVSQGEV 248
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: A0A6H5KVP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.300e-14
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:    3 IASQTEHPGKPWVRQTAGRDGRYPTTSGDSEGEDGDGEKKNDVSQ 137
            IAS+TEHPG+PWV QT GRDGR+PTTSGD EGE+GDG+KKN+V Q
Sbjct:  255 IASETEHPGEPWVWQTEGRDGRHPTTSGDLEGENGDGQKKNEVRQ 299
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: A0A6H5LEX8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX8_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.090e-13
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 3 
Query:    3 IASQTEHPGKPWVRQTAGRDGRYPTTSGDSEGEDGDGEKK 122
            IAS+TEHPG+PWV QT GRDGR+P+TSGD EGE+GDGEKK
Sbjct:   76 IASETEHPGEPWVWQTEGRDGRHPSTSGDLEGEEGDGEKK 115
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: A0A6H5KSG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.700e-13
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:    3 IASQTEHPGKPWVRQTAGRDGRYPTTSGDSEGEDGDGEKKNDV 131
            IAS+TEHPG+PWV QT GRDGR+PTTSGD EGE+GDGEKKN+ 
Sbjct:  358 IASETEHPGEPWVWQTEGRDGRHPTTSGDLEGENGDGEKKNEA 400
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: A0A6H5KW13_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW13_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.160e-13
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:    3 IASQTEHPGKPWVRQTAGRDGRYPTTSGDSEGEDGDGEKKNDVSQ 137
            IAS+TEH G+PWV QT GRDGR+PTTSG+ EGE+GDGEKKN+VSQ
Sbjct: 2763 IASETEHSGEPWVWQTDGRDGRHPTTSGNLEGENGDGEKKNEVSQ 2807
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: D8LCI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCI0_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 4.240e-12
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:    3 IASQTEHPGKPWVRQTAGRDGRYPTTSGDSEGEDGDGEKKNDV 131
            +  +T+ PGKPWV Q AGRDGR+PTTSG  EGEDGDGEK+N+ 
Sbjct:    6 LGRETQDPGKPWVWQIAGRDGRHPTTSGGGEGEDGDGEKRNEA 48
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: A0A6H5L8Z0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z0_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.340e-11
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 3 
Query:    3 IASQTEHPGKPWVRQTAGRDGRYPTTSGDSEGEDGDGEKKNDV 131
            IAS+TE+PG+ WV QT GRDGR+PTTSGD EGEDGDGEKK++ 
Sbjct:  620 IASETEYPGEAWVWQTEGRDGRHPTTSGDLEGEDGDGEKKDEA 662
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.340e-11
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 3 
Query:    3 IASQTEHPGKPWVRQTAGRDGRYPTTSGDSEGEDGDGEKKNDV 131
            IAS+TE+PG+ WV QT GRDGR+PTTSGD EGEDGDGEKK++ 
Sbjct:  620 IASETEYPGEAWVWQTEGRDGRHPTTSGDLEGEDGDGEKKDEA 662
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BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Match: A0A6H5JZM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.510e-11
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:   16 PNILESPGYGRLQGETDGTLPPRATRRARTVMEKRR 123
            PNILESPGYGR +GETDG LPPRAT RARTVMEKRR
Sbjct:  124 PNILESPGYGRPKGETDGILPPRATWRARTVMEKRR 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7759.18992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JL54_9PHAE6.480e-1987.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS32_9PHAE4.730e-1885.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVP6_9PHAE4.300e-1477.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LEX8_9PHAE1.090e-1380.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSG4_9PHAE1.700e-1379.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW13_9PHAE3.160e-1377.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LCI0_ECTSI4.240e-1267.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8Z0_9PHAE1.340e-1174.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE1.340e-1174.42Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZM4_9PHAE2.510e-1188.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7759contigEcto-sp13_S_contig7759:4250..4396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score66.2
Seed ortholog evalue4.7e-09
Seed eggNOG ortholog2880.D7FIA9
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2D5KK@1,2SYVY@2759
Cds size147
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464045.7755642-CDS-Ecto-sp13_S_contig7759:4249..43961681464045.7755642-CDS-Ecto-sp13_S_contig7759:4249..4396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7759 4250..4396 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7759.18992.1prot_Ecto-sp13_S_contig7759.18992.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7759 4250..4396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7759.18992.1

>prot_Ecto-sp13_S_contig7759.18992.1 ID=prot_Ecto-sp13_S_contig7759.18992.1|Name=mRNA_Ecto-sp13_S_contig7759.18992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
SSHHRPNILESPGYGRLQGETDGTLPPRATRRARTVMEKRRTTSVKET*
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mRNA from alignment at Ecto-sp13_S_contig7759:4250..4396+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7759.18992.1 ID=mRNA_Ecto-sp13_S_contig7759.18992.1|Name=mRNA_Ecto-sp13_S_contig7759.18992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7759:4250..4396+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCATCGCATCACAGACCGAACATCCTGGAAAGCCCTGGGTACGGCAGACT
GCAGGGCGAGACGGACGGTACCCTACCACCTCGGGCGACTCGGAGGGCGA
GGACGGTGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGACATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7759:4250..4396+

>mRNA_Ecto-sp13_S_contig7759.18992.1 ID=mRNA_Ecto-sp13_S_contig7759.18992.1|Name=mRNA_Ecto-sp13_S_contig7759.18992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7759:4250..4396+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCATCGCATCACAGACCGAACATCCTGGAAAGCCCTGGGTACGGCAGACT
GCAGGGCGAGACGGACGGTACCCTACCACCTCGGGCGACTCGGAGGGCGA
GGACGGTGATGGAGAAAAGAAGAACGACGTCAGTCAAGGAGACATGA
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