mRNA_Ecto-sp13_S_contig12265.1899.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12265.1899.1
Unique NamemRNA_Ecto-sp13_S_contig12265.1899.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12265.1899.1 vs. uniprot
Match: D7FMA7_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA7_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 5.920e-58
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 QVDQKFNKMVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRKTLDFQGWLAEREKAEV 297
            QVDQKFNKMVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRK LDFQGWLAER+KAEV
Sbjct:  181 QVDQKFNKMVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRKPLDFQGWLAERQKAEV 279
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BLAST of mRNA_Ecto-sp13_S_contig12265.1899.1 vs. uniprot
Match: D7FMA8_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMA8_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.160e-25
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:    1 QVDQKFNKMVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPENLPPPIGRKTLDFQGWLAEREKAE 294
            Q D  F KMV+ S+QG+LPVR+GS+N+CYPP+FFR +W +I+ FLHERV+ R R I G D +VL  L   V P+ LPPP+G K  +F  WLAE+ + +
Sbjct:  140 QADPTFVKMVMQSLQGALPVRIGSINICYPPTFFRVVWGIINPFLHERVKRRVRVIPGTDAEVLGVLGAIVPPDGLPPPMGPKPKEFSAWLAEQAQKD 237
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BLAST of mRNA_Ecto-sp13_S_contig12265.1899.1 vs. uniprot
Match: A0A7S2KWX8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWX8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.550e-6
Identity = 34/101 (33.66%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:    7 DQKFNKMVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGTVAPEN-LPPPIGRKTL----DFQGWLAEREKAE 294
            D+   KM  DS++  LP+R+GS  +C+PP+FF  I+ ++  FL   +R R     G DE VL+ L     P + +P  +G + +     ++ WL ER+++E
Sbjct:  186 DRGLAKMFSDSMKRCLPIRIGSFQVCHPPTFFVIIFPILKLFLGAYLRNRICVNGGSDEKVLKKLNSCGIPSSSIPEELGGEVVVDNETWKAWLKERKQSE 286
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BLAST of mRNA_Ecto-sp13_S_contig12265.1899.1 vs. uniprot
Match: A0A7S3L2B2_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L2B2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.120e-6
Identity = 30/96 (31.25%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:    1 QVDQKFNKMVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYGEDEDVLEALTGT-VAPENLPPPIGRKTL-DFQGWLAER 282
            Q+D+   K++L SIQG++PVR+ + + C PP+F + +   +  F+ ER + R  F +G  E V   L    +  E++P  +G   + D + W+ +R
Sbjct:  188 QIDRGLIKILLPSIQGTIPVRLSAFHSCQPPTFLKLVLPFVKLFMSERTKDRLLFHFGSTEKVCRKLQSYGLRKEDIPQTLGGNVVVDTKAWIEQR 283
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12265.1899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMA7_ECTSI5.920e-5897.98CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
D7FMA8_ECTSI1.160e-2553.06CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2KWX8_9STRA1.550e-633.66Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3L2B2_9STRA2.120e-631.25Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12265contigEcto-sp13_S_contig12265:868..3284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score188.7
Seed ortholog evalue1.2e-45
Seed eggNOG ortholog2880.D7FMA7
Model size1606
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Cds size276
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.061461-UTR-Ecto-sp13_S_contig12265:867..8911681462652.061461-UTR-Ecto-sp13_S_contig12265:867..891Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12265 868..891 +
1681462652.0969908-UTR-Ecto-sp13_S_contig12265:1978..32841681462652.0969908-UTR-Ecto-sp13_S_contig12265:1978..3284Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12265 1979..3284 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.075694-CDS-Ecto-sp13_S_contig12265:891..10071681462652.075694-CDS-Ecto-sp13_S_contig12265:891..1007Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12265 892..1007 +
1681462652.085564-CDS-Ecto-sp13_S_contig12265:1818..19781681462652.085564-CDS-Ecto-sp13_S_contig12265:1818..1978Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12265 1819..1978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12265.1899.1prot_Ecto-sp13_S_contig12265.1899.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12265 892..1978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12265.1899.1

>prot_Ecto-sp13_S_contig12265.1899.1 ID=prot_Ecto-sp13_S_contig12265.1899.1|Name=mRNA_Ecto-sp13_S_contig12265.1899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MVLDSIQGSLPVRVGSMNMCYPPSFFRWIWMVISTFLHERVRARFRFIYG
EDEDVLEALTGTVAPENLPPPIGRKTLDFQGWLAEREKAEV*
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mRNA from alignment at Ecto-sp13_S_contig12265:868..3284+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12265.1899.1 ID=mRNA_Ecto-sp13_S_contig12265.1899.1|Name=mRNA_Ecto-sp13_S_contig12265.1899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12265:868..3284+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGACCAGAAGTTCAACAAAATGGTTTTAGACAGCATTCAGGGATC
GCTGCCCGTCCGAGTGGGGAGCATGAACATGTGCTACCCGCCGTCCTTCT
TCCGGTGGATCTGGATGGTCATCAGCACATTCCTGCACGAGTGAGCATGA
CAACCGCAATCACCTCTTTTTGATGTGTCTGTCTTTCTTGTTTGTGGTAC
TTTAGACGGGCGCTTTCCTTTTTTCGTCGCTTTTTTTGCTTGAGATGTAG
ATATGGCGTAGAAGAGAGGGGAAGACACGTGTCGAGACGGAGTGCTCAGG
AATGATTGCCAGTAAACAAGACTCAGTTTTCAAGGCCTTTCCTCTGTAAG
TCGCGGAACACTCGTGTTTCGCTTCGGGCCGAACTATCCAAATCTGTCAT
GAAAGCGCACGTCTTCTCTCGTATTGCCCACGGCGAGACTTGCGGGGTTG
TGTATCATCTCCGGCGGCCTCGATTGCCTAAGAATGTCGGCTGTTGTAGA
GCCAAGCTGGTGTCTTAATTTTTTCGAGGGACGTCCTGTAAGCAGTTGCT
AGTTGGCCCCGACTTTTTACCGGCATTTGCAAAAATGGCCGTCGGTTGTC
ACAAAGGTTGGATCACCCCCCTGCCAAGATAGCAACAACGCGATTTTCTG
CTCGGAGCTCAGGCTGGTTCGGCACGTTAAGATTGCTGGCGCAATACCAT
ACCCTTGCGTCGTGCTTGCTTGCTGTGAGCATGGAGCACCGCCCTCACCA
CCAGAGCAACATCAAGGGATACATAGCCCCCGCCGACGGTTCATCGGTTC
CGTGGGGATAATGTTCCGTCCTGTCCAGGACGCGCGGTCTTCGGCCTAAC
AACTAAGACACGCAAAACATGAGCCCCCCCCCCCCCCCCCAGCGGCTCTC
CTCGAACTAATCCGCCGCTTCGTGTGTGATGTTTTTTTTGTCTCCTCGCA
GGAGGGTAAGGGCGCGGTTTCGATTCATATACGGGGAGGATGAGGATGTC
CTCGAGGCGCTCACAGGCACCGTTGCCCCGGAAAACTTACCGCCTCCCAT
AGGCCGGAAAACCCTAGATTTCCAAGGGTGGCTGGCGGAGCGCGAGAAAG
CGGAGGTGTGACCCTGCGTGGCTGGGTATCTCACTAGCTGTTGGATACGG
TTGTCTGATGACTTGCCTCCGAAATATTTTGTTGACCCGCATATCCTGTG
GGGTTCTAGGTTCCTCTCGTAGTATTTTGAGTTCCCTCGGTTTGTTGGTA
GCGAAGTGTGGTCGCCGGAATAGTGATGGACCTGACTCTTATGAAGAGCC
TGACGTTACGCGCTTCCCTTGTCAAGCACAACTAGAATTGAGAGAGAACG
CGGAAGTTGGCCTTGAATTCAAGCTTCCAAGGTTGCCGTGAACTTAGAAA
GTTGTTTTTAAAGAGTTAACATCCAGGGGGGTGGGGGGTAGTACCCGCGC
ATCAAGGCAGCGCCGCCAGTCCTTGTATTTTCCCCCCCAATTGGTGTTGC
TTGAGAAATCCCCGACCCCATGATGTACCTATGGTGATGTTTGGGTTGGG
GCGGACAATATCTGGAGAAAGACTTCGTTAGGTGTTGGTTTTTTTAAAGA
GTATTGCGGCGTGTGTGTGGATTGCGTCTTGGCTTTAGGCGCCATGTGTG
CGAAAGCTGCAGGAGCTGAAACCTAGTCGAGGCGAAGGTTCGGTTTATCC
TTCAACGTATGAGGATATGCCTCGTGGATCGACAGACGCTTGGAGGAGGA
GTAGGAGGATCAGGGTGTGGGTGCGTAGAGGGGGAAGGGGGGACTGCTTT
AGAGGGTTGGTTTCATCAAGGTGTCGTTGACGGCACGGGATGCTATTATT
TTACCTCCCTCTCCGGGGAGATTCCGTAGCGCGTACCCAGCTCTGCCTAT
GCCTCAGAAATAACGCATAAATTGTCTTTCTCCTTCAAAAAAAACTTTCG
ATTAGCACAACAATCTTCTGAGTTTCGTTTGGAGAAGACTAGTGTTGTTT
GCTTGCGGGTGCGAGATAAGGAGACGCGGACACCGCGTGCTGGGTACAAA
CATAGCAGCTCCACGTGGCGCACGTGCTTTTCTCCAATCTTGTTGTACTT
GGGAGGCCTTCTAATCCCTAAACCGTCTGCGAGGAACAACACAAGTATCA
AGCCGTCCACGTCAATGACGTCGACGCAATTGTTAGTGATGTCGACCGCA
GCAGTGTAGATTCTTCTATGCGTCGGTGGAATACGCGGCAAACAGTGGAA
GAAGAGCCATACAGAGTCGGCGTTTTGGCTGTGGGAATCTGTCTCCCCTC
TCCCCGACAACATCACCAACGCTTAGTTATTTTGTCGCTCCGACGGATTT
GGTCTCCGTCTCTGGCGTTCTTTCTTCTTTTGTGTGTGCCTTTTCGGGGG
ACAATTCTTGTCTTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12265:868..3284+

>mRNA_Ecto-sp13_S_contig12265.1899.1 ID=mRNA_Ecto-sp13_S_contig12265.1899.1|Name=mRNA_Ecto-sp13_S_contig12265.1899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12265:868..3284+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTTAGACAGCATTCAGGGATCGCTGCCCGTCCGAGTGGGGAGCAT
GAACATGTGCTACCCGCCGTCCTTCTTCCGGTGGATCTGGATGGTCATCA
GCACATTCCTGCACGAGAGGGTAAGGGCGCGGTTTCGATTCATATACGGG
GAGGATGAGGATGTCCTCGAGGCGCTCACAGGCACCGTTGCCCCGGAAAA
CTTACCGCCTCCCATAGGCCGGAAAACCCTAGATTTCCAAGGGTGGCTGG
CGGAGCGCGAGAAAGCGGAGGTGTGA
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