mRNA_Ecto-sp13_S_contig77571.18990.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77571.18990.1
Unique NamemRNA_Ecto-sp13_S_contig77571.18990.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: D7FI72_ECTSI (4-hydroxyphenylpyruvate dioxygenase, plastid n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI72_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.570e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDGDNEGDR 439
            +ELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDGDNEGDR
Sbjct:  406 EELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDGDNEGDR 458
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: A0A7S2SND0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SND0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.930e-14
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGC 400
            + LG+LADKD+ +GVLLQ+FTKPVGDRPTLF EIIQR+GC
Sbjct:   51 ERLGILADKDDQEGVLLQIFTKPVGDRPTLFLEIIQRLGC 90
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: A0A061QYI8_9CHLO (4-hydroxyphenylpyruvate dioxygenase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QYI8_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 1.490e-13
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDGD 424
            +ELGLLADKD D GVLLQVFTKPVGDRPTLF EIIQRIGC  E T+ +
Sbjct:  354 EELGLLADKD-DQGVLLQVFTKPVGDRPTLFLEIIQRIGCMHEPTEDE 400
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: A0A1Z5J6I1_FISSO (4-hydroxyphenylpyruvate dioxygenase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6I1_FISSO)

HSP 1 Score: 75.5 bits (184), Expect = 3.920e-13
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDGDNEGDR 439
            +ELG+LAD D D+G+LLQ+FTKP+GDRPT FFEIIQR+GC F+    D E +R
Sbjct:  396 EELGILADAD-DEGILLQIFTKPIGDRPTFFFEIIQRVGCRFKPEGEDTEMER 447
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: A0A5J4Y5G5_9CHLO (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y5G5_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 6.890e-13
Identity = 37/50 (74.00%), Postives = 39/50 (78.00%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDGDNE 430
            +ELGLLAD D D G+LLQVFTKPVGDRPTLF EIIQRIGC F     D E
Sbjct:  350 EELGLLADLD-DQGILLQVFTKPVGDRPTLFLEIIQRIGCEFSVKQPDGE 398
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: A0A1E7FFW9_9STRA (4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FFW9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 7.510e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDGDNE 430
            +ELG+LAD DE+ G+L+Q+FTKPVGDRPT FFE+IQRIGC  E  D D +
Sbjct:  433 EELGILADSDEE-GILMQIFTKPVGDRPTFFFELIQRIGCVIEHDDDDRQ 481
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: A0A0A9CVE9_ARUDO (Hppd1 n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9CVE9_ARUDO)

HSP 1 Score: 70.1 bits (170), Expect = 1.160e-12
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGC 400
            QELG+L D+D D GVLLQ+FTKPVGDRPTLF EIIQRIGC
Sbjct:   41 QELGVLVDRD-DQGVLLQIFTKPVGDRPTLFLEIIQRIGC 79
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: A0A7S4MUN6_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MUN6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.580e-12
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATD 418
            +ELG+LAD D D+GVLLQVFTKPVGDRPT F EIIQRIGCA++  D
Sbjct:  423 EELGILADAD-DEGVLLQVFTKPVGDRPTFFVEIIQRIGCAYKPDD 467
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: A0A068V752_COFCA (Uncharacterized protein n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068V752_COFCA)

HSP 1 Score: 68.6 bits (166), Expect = 3.440e-12
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFEATDG 421
            +ELG+L D+D D G LLQ+FTKPVGDRPT+F EIIQRIGC  +  +G
Sbjct:   29 EELGILVDRD-DQGTLLQIFTKPVGDRPTIFIEIIQRIGCMIKDDEG 74
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BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Match: A0A7R9XXE8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9XXE8_9VIRI)

HSP 1 Score: 69.7 bits (169), Expect = 4.370e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 2 
Query:  281 QELGLLADKDEDDGVLLQVFTKPVGDRPTLFFEIIQRIGCAFE 409
            +ELG+L DKD D GVLLQ+FTKPVGDRPT+F EIIQR+GC  E
Sbjct:   86 EELGMLVDKD-DQGVLLQIFTKPVGDRPTIFLEIIQRVGCMRE 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77571.18990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI72_ECTSI1.570e-2598.114-hydroxyphenylpyruvate dioxygenase, plastid n=2 T... [more]
A0A7S2SND0_9STRA6.930e-1477.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A061QYI8_9CHLO1.490e-1379.174-hydroxyphenylpyruvate dioxygenase n=2 Tax=Tetras... [more]
A0A1Z5J6I1_FISSO3.920e-1364.154-hydroxyphenylpyruvate dioxygenase n=2 Tax=Fistul... [more]
A0A5J4Y5G5_9CHLO6.890e-1374.004-hydroxyphenylpyruvate dioxygenase n=1 Tax=Trebou... [more]
A0A1E7FFW9_9STRA7.510e-1366.004-hydroxyphenylpyruvate dioxygenase n=1 Tax=Fragil... [more]
A0A0A9CVE9_ARUDO1.160e-1282.50Hppd1 n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A... [more]
A0A7S4MUN6_9STRA2.580e-1276.09Hypothetical protein n=3 Tax=Odontella aurita TaxI... [more]
A0A068V752_COFCA3.440e-1265.96Uncharacterized protein n=1 Tax=Coffea canephora T... [more]
A0A7R9XXE8_9VIRI4.370e-1274.42Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77571contigEcto-sp13_S_contig77571:142..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score109.8
Seed ortholog evalue5.6e-22
Seed eggNOG ortholog2880.D7FI72
Model size439
KEGG rclassRC00505,RC00738
KEGG koko:K00457
KEGG ReactionR01372,R02521
KEGG Pathwayko00130,ko00350,ko00360,ko01100,map00130,map00350,map00360,map01100
KEGG ModuleM00044
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009987,GO:0016054,GO:0019439,GO:0019752,GO:0042802,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0046395,GO:0071704,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Exons1
EggNOG free text desc.4-hydroxyphenylpyruvate dioxygenase activity
EggNOG OGsCOG3185@1,KOG0638@2759
EC1.13.11.27
Cds size222
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s2_g9516_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464045.6427472-UTR-Ecto-sp13_S_contig77571:141..3581681464045.6427472-UTR-Ecto-sp13_S_contig77571:141..358Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig77571 142..358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464045.679063-CDS-Ecto-sp13_S_contig77571:358..5801681464045.679063-CDS-Ecto-sp13_S_contig77571:358..580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77571 359..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77571.18990.1prot_Ecto-sp13_S_contig77571.18990.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77571 359..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77571.18990.1

>prot_Ecto-sp13_S_contig77571.18990.1 ID=prot_Ecto-sp13_S_contig77571.18990.1|Name=mRNA_Ecto-sp13_S_contig77571.18990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MVFSVKTTTTITTRRPHAPTNQELGLLADKDEDDGVLLQVFTKPVGDRPT
LFFEIIQRIGCAFEATDGDNEGDR
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mRNA from alignment at Ecto-sp13_S_contig77571:142..580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77571.18990.1 ID=mRNA_Ecto-sp13_S_contig77571.18990.1|Name=mRNA_Ecto-sp13_S_contig77571.18990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=439bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77571:142..580+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCTGCACTCTTCCACGTTCATTCGCCGTTGACGTTGGGTGGACTTAAG
AGCAACCGTGTGCCTTAGGCACTTCGCCAATACAACATTTATTTGCCCTT
CCGATCGAGAAAGAGGAGTTCCATTGGCCCATTACACCCGCACCGTGACC
ACGGGAATGGACCGGTCAAGCGTATGACGAGAACGGACAGTTGGAGGTTC
TGGGTAGAGAGATCGGGATGGTTTTTAGCGTGAAGACAACAACAACAATA
ACAACCCGCCGCCCACATGCCCCAACCAACCAGGAGCTCGGCCTCTTAGC
CGACAAGGACGAAGACGACGGCGTCCTTCTCCAGGTGTTCACGAAGCCCG
TGGGGGATCGCCCGACGCTCTTCTTCGAGATAATCCAGCGCATCGGTTGC
GCGTTCGAAGCCACGGACGGTGACAACGAGGGTGACCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77571:142..580+

>mRNA_Ecto-sp13_S_contig77571.18990.1 ID=mRNA_Ecto-sp13_S_contig77571.18990.1|Name=mRNA_Ecto-sp13_S_contig77571.18990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77571:142..580+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTTTAGCGTGAAGACAACAACAACAATAACAACCCGCCGCCCACA
TGCCCCAACCAACCAGGAGCTCGGCCTCTTAGCCGACAAGGACGAAGACG
ACGGCGTCCTTCTCCAGGTGTTCACGAAGCCCGTGGGGGATCGCCCGACG
CTCTTCTTCGAGATAATCCAGCGCATCGGTTGCGCGTTCGAAGCCACGGA
CGGTGACAACGAGGGTGACCGG
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