mRNA_Ecto-sp13_S_contig7756.18988.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7756.18988.1
Unique NamemRNA_Ecto-sp13_S_contig7756.18988.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: A0A6H5LJ48_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ48_9PHAE)

HSP 1 Score: 603 bits (1554), Expect = 8.330e-210
Identity = 323/366 (88.25%), Postives = 331/366 (90.44%), Query Frame = 1
Query:    1 QPRPEYHVFGLYLEGAMQRGPDAGVLLRLSTDKEDVAERWISTLGKVCAQEEDNSSPASSPXXXXXXXXXXXXXXXX--SPVVTASMPPXXXXAQGLDSASRMSRISSVRMSRKGSWDVAGGLENLKRLTQEVNIGRLDGDDTHERSGRVSDQGVARDEQDKRKTMVKAK-KXXXXKFEPTGYPASRPMHKEAKMSILSAGASSTQNYRGLLNLMAILLLVTNSRLIFANLRRYGVLATAPTLNEPSDLLDAPRIAGTLSLILHVVCANLIEKLAMPRPGNSKGMLFGAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRERALAAKRKGADGGG 1089
            +PRP+YHVFGLYLEGAMQRGPDAGVLLRLSTDKEDVAERWIS LGKVCAQEED+SSPASSP              XX  SPVVT SM  XXXXA GLD A RMSRISSVRMSRKGSWDVAGGL+NLKRLTQEVNIGRLDGDD  ERS RVSDQGVA DE DKR TMVKAK K    KFEPTGYPASRPMH+EAKMSILSAGASSTQNYRGLLNLMAILLLVTNSRLIFANLRRYGVL TAPTLNEPSDLLDAPRIAGTLSLILHVVCANL+EKLAMPRPGNSKGMLFGAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAW+E+ALAAKRKGADGGG
Sbjct:  261 KPRPQYHVFGLYLEGAMQRGPDAGVLLRLSTDKEDVAERWISALGKVCAQEEDHSSPASSPCASEADQSEATPSSXXXSSPVVTESMXXXXXXAHGLDPAPRMSRISSVRMSRKGSWDVAGGLQNLKRLTQEVNIGRLDGDDPLERSARVSDQGVASDEHDKRNTMVKAKRKKKKKKFEPTGYPASRPMHREAKMSILSAGASSTQNYRGLLNLMAILLLVTNSRLIFANLRRYGVLVTAPTLNEPSDLLDAPRIAGTLSLILHVVCANLVEKLAMPRPGNSKGMLFGAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWQEKALAAKRKGADGGG 626          
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: D8LSK1_ECTSI (Acyl-CoA binding domain protein and partial Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK1_ECTSI)

HSP 1 Score: 396 bits (1018), Expect = 3.620e-130
Identity = 216/261 (82.76%), Postives = 225/261 (86.21%), Query Frame = 1
Query:    1 QPRPEYHVFGLYLEGAMQRGPDAGVLLRLSTDKEDVAERWISTLGKVCAQEEDNSSPASSPXXXXXXXXXXXXXXXX--SPVVTASMPPXXXXAQGLDSASRMSRISSVRMSRKGSWDVAGGLENLKRLTQEVNIGRLDGDDTHERSGRVSDQGVARDEQDKRKTMVKAKKXXXXKFEPTGYPASRPMHKEAKMSILSAGASSTQNYRGLLNLMAILLLVTNSRLIFANLRRYGVLATAPTLNEPSDLLDAPRIAGTLSLI 777
            +PRPEYHVFGLYLEGAMQRGPDAGVLLRLSTDKEDVAE+WIS+LG+VCAQEED+SSPASSP                  SPVVTASMPP    A GLDSA RMSRISSV MSRKGSWDVAGGL+NLKRLTQEV+IGRLDGDD  +RS RVSDQGVARDEQDKRKTMVKAKK    KFEPTGYPASRPMHKEAKMSILSAGASSTQNYRGLLNLMAI  LVTNSRLIFANLRRYGVLAT P LNEPSDLLDAPRIAGTLSL+
Sbjct:  261 KPRPEYHVFGLYLEGAMQRGPDAGVLLRLSTDKEDVAEKWISSLGEVCAQEEDHSSPASSPCASEADQSEATPSSSACSSPVVTASMPPAPPPADGLDSAPRMSRISSVGMSRKGSWDVAGGLQNLKRLTQEVSIGRLDGDDPLDRSVRVSDQGVARDEQDKRKTMVKAKKKKK-KFEPTGYPASRPMHKEAKMSILSAGASSTQNYRGLLNLMAIFFLVTNSRLIFANLRRYGVLATVPKLNEPSDLLDAPRIAGTLSLV 520          
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: D8LSK0_ECTSI (Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK0_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 1.760e-118
Identity = 178/203 (87.68%), Postives = 186/203 (91.63%), Query Frame = 1
Query:  817 MPRPGNSKGMLFGAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRERALAAKRKGADGGGXXXXXXXDPSAA-ERWRGGGTGGWSVEGFSDGGQQQQQQVSRTGQPGDVDTATITHYPDNIGVLNLLYFWFAPTLCYQPDYPRSAERHYRYILSLVVRLVIVGGAMSLISDQ 1422
            MPRPGNSKGMLFGAEWPVLLLHG+NIFLCLGIAVA+VWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRE+ALAAKRKGADGGG       DP+AA ERWRGGGTGGWSVEGFSDGGQQQQQ        GDVDTATITHYP+NIG+L+LLYFWFAPTLCYQPDYPRSAER YRYILSLVVRLVIVGGAMSLI+DQ
Sbjct:    1 MPRPGNSKGMLFGAEWPVLLLHGLNIFLCLGIAVAIVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWREKALAAKRKGADGGGEGVGEGGDPAAAAERWRGGGTGGWSVEGFSDGGQQQQQSQPSRRTNGDVDTATITHYPENIGLLSLLYFWFAPTLCYQPDYPRSAERRYRYILSLVVRLVIVGGAMSLIADQ 203          
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: A0A7S3XU69_HETAK (O-acyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU69_HETAK)

HSP 1 Score: 133 bits (334), Expect = 1.480e-30
Identity = 99/291 (34.02%), Postives = 141/291 (48.45%), Query Frame = 1
Query:  568 AKMSILSAGASSTQNYRGLLNLMAILLLVTNSRLIFANLRRYGVLATAPTLNEPSDLL-----DAPRIAGTLSLILHVVCANLIEKLAMPRPGNSKGMLFGAEWPVLLLHGINIFLCLGIAVAVVWRSEG-SPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRERALAAKRKGADGGGXXXXXXXDPSAAERWRGGGTGGWSVEGFSDGGQQQQQQVSRTGQPGDVDTATITHYPDNIGVLNLLYFWFAPTLCYQPDYPRSAERHYRYILSLVVRLVIVGGAMSLISDQ 1422
            A+ S+LS+ AS   NYRG  NL  I+L+VTN R+I  NL +YG+L   P+L+   D       D P   G L + +HV  A  +E+LA+          FG +    +LHGIN+   LG A  +VW     +   G  ++  AV LW+KL+S+AH NRDLRLA R++     R+GA  G          +  +                     Q Q V         +T+ ++ YP+N+   N+ YFWFAPTL YQ +YPRS       +L L+ R+ I    M  +  Q
Sbjct:    2 ARPSLLSS-ASQDHNYRGFFNLGVIILVVTNFRMIMENLLKYGLLLGLPSLDSRYDWSSFRPNDWPCTLGILQMQVHVCIALGLEQLALVET-------FG-DTTTAVLHGINLTAQLGGATWLVWAHPAVTSAAGLIFMLIAVTLWLKLVSWAHVNRDLRLAARDQVQGGGRRGAREGSGHGPLYAQAAEFDA--------------------QVQDVEAK------ETSRLS-YPENLTFTNIYYFWFAPTLSYQLNYPRSDRISRSVVLGLLARICIFSALMVFVIQQ 256          
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: A0A348HAZ3_9CHLO (Diacylglycerol O-acyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A348HAZ3_9CHLO)

HSP 1 Score: 132 bits (333), Expect = 1.850e-29
Identity = 102/311 (32.80%), Postives = 144/311 (46.30%), Query Frame = 1
Query:  556 MHKEAKMSILSAGASSTQNYRGLLNLMAILLLVTNSRLIFANLRRYGVLAT-APTLNEPSDLLDAPRIAGTLSLILHVVCANLIEKLAMPR-----------------PGNSKGMLF----GAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRERALAAKRKGADGGGXXXXXXXDPSAAERWRGGGTGGWSVEGFSDGGQQQQQQVSRTGQPGDVDTATITHYPDNIGVLNLLYFWFAPTLCYQPDYPRSAERHYRYILSLVVRLVIVGGAMSLISDQ 1422
            +H E++ S+LSA   +   + G+LNLM ++L+  N+RLI  NL +YGVL + A  L       + P +    +L L V+ AN IEKL   R                 P +++ +        EW V  LH +N+   + +  AVV  +   PV GF  +   VILWMKL+SYAHCN DLR   R RA   +     G         +P  AE       GGW                         D  T+  YP+N+ + NL+ F   PTL YQP YPRS     R++L   +RLV + G M +I++Q
Sbjct:  284 LHTESRPSMLSADRIALTQHSGILNLMMLILVAANARLIVENLLKYGVLTSPANWLKWLVPRGNFPLLLCWPALALSVLIANGIEKLGAARLKAEKKASTAKKKKDLRPSDARRLAAKMGRSTEWMVFALHVMNLLCTMLVPSAVVELTHAEPVPGFFVVMCTVILWMKLVSYAHCNYDLRA--RRRAADHRLHERHGS------PSEPDIAEE------GGW-------------------------DGVTLVSYPNNLTLANLISFLPLPTLIYQPSYPRSTRFRGRWVLWYALRLVALAGVMLIITEQ 555          
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: A0A836CDX9_9STRA (O-acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDX9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.450e-28
Identity = 84/208 (40.38%), Postives = 110/208 (52.88%), Query Frame = 1
Query:  799 LIEKLAMPRPGNSKGMLFGAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRERALAAKRKGADGGGXXXXXXXDPSAAERWRGGGTGGWSVEGFSDGGQQQQQQVSRTGQPGDVDTATITHYPDNIGVLNLLYFWFAPTLCYQPDYPRSAERHYRYILSLVVRLVIVGGAMSLISDQ 1422
            L+  L+ P+   SK +    E  +L LHG+N  + L I + VVW   G+P+FGFAYLFTAV+LWMKLISYAHCNRDLRLAW   A AAKRK              P+           G      S+        ++       V   T + YP NI + N+ YFWFAPTL YQ +YP++    + Y+ +L VR  I    M+LI +Q
Sbjct:   33 LLIVLSKPKRTASKRI---PESLLLSLHGLNCTVELCIPLYVVWHYTGAPMFGFAYLFTAVLLWMKLISYAHCNRDLRLAWYHAAEAAKRKDDKADNNSHTHLAAPAQPPALASTAVSGTQALLLSNAIHDAHHVLACA-----VSWQT-SSYPSNISLSNVYYFWFAPTLSYQLNYPKTPCIRWYYVANLAVRCCIALLLMTLIVEQ 231          
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: A0A1E7F798_9STRA (Diacylglycerol O-acyltransferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F798_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.820e-26
Identity = 94/284 (33.10%), Postives = 130/284 (45.77%), Query Frame = 1
Query:  556 MHKEAKMSILSAGASSTQNYRGLLNLMAILLLVTNSRLIFANLRRYGVLATAPTLNEPS--------DLLDAPRIAGTLSLILHVVCANLIEKLAMPRPGNSKGMLFGAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRERALAAKRKGADGGGXXXXXXXDPSAAERWRGGGTGGWSVEGFSDGGQQQQQQVSRTGQPGDVDTATITHYPDNIGVLNLLYFWFAPTLCYQPDYPRSAERHYRYILSLVVRL 1383
            MH+ A+ S LS   S T NYRGLLNL  I+L+++N R++   +R YG + T    + P         D++D P +   + L + V+ A LIE       G S+  L   EW  + LH IN  L L + + +VW+   SPV G     ++ +LWMKLISYAH N D R                                              F D      + V    Q  D ++ ++ +YP NI V N+ YFWFAPTL YQ  +PR   R    IL+LV+RL
Sbjct:    1 MHRRAEGSYLSHD-SPTPNYRGLLNLGVIILVISNFRILLGTMREYGFVLTHGYFSVPDEEYSFKWKDIVDVPFVFTMIMLNIFVIFAYLIEL------GISRRFL--KEWLGISLHIINTNLSLLLPMVIVWKYINSPVNGAVLQMSSTVLWMKLISYAHANADYRH---------------------------------------------FPD------RNVENIIQNTDEESISL-NYPRNITVTNIYYFWFAPTLTYQMVFPRLVRRSKGQILNLVLRL 223          
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: I0YRH1_COCSC (O-acyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YRH1_COCSC)

HSP 1 Score: 120 bits (302), Expect = 4.170e-26
Identity = 94/292 (32.19%), Postives = 133/292 (45.55%), Query Frame = 1
Query:  619 GLLNLMAILLLVTNSRLIFANLRRYGVLATAPTLNE---PSDLLDAPRIAGTLSLILHVVCANLIEKLAMPR-----------------PGNSKGMLF----GAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRERALAAKRKGADGGGXXXXXXXDPSAAERWRGGGTGGWSVEGFSDGGQQQQQQVSRTGQPGDVDTATITHYPDNIGVLNLLYFWFAPTLCYQPDYPRSAERHYRYILSLVVRLVIVGGAMSLISDQ 1422
            G+LNLM ++L+  N+RLI  NL +YGVL +     +   PS   + P +    +L + V+ ANLIE++ + R                 P +++ +        EW +  LH  N+FL L +   VV  +   PV GF  +   VILWMKL+SYAHCN DLR     R +A  R     G        +P  AE       G W                         D   +  YP+N+ + NL+ F   PTL YQP YPRS     R++L   VRLV + G M +I++Q
Sbjct:    7 GILNLMMLILVAANARLIVENLLKYGVLTSPANWLKWLVPSG--NFPLLLCWPALAMFVLFANLIERIGLARLKTEKKASTAKKKKELRPSDARRLAAKMGRSTEWLLFTLHVTNLFLTLAVPCYVVETTHAEPVPGFFVVVCTVILWMKLVSYAHCNYDLR---SRRRVADHRSHERHGSPS-----EPDIAEE------GVW-------------------------DGVALVSYPNNLTLANLVSFLPLPTLIYQPSYPRSTRFRGRWVLWYAVRLVALAGVMLIITEQ 257          
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: A0A0D6R6S9_ARACU (O-acyltransferase n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R6S9_ARACU)

HSP 1 Score: 118 bits (295), Expect = 4.600e-25
Identity = 87/293 (29.69%), Postives = 129/293 (44.03%), Query Frame = 1
Query:  544 ASRPMHKEAKMSILSAGASSTQNYRGLLNLMAILLLVTNSRLIFANLRRYGVLATAPTLNEPSDLLDAPRIAGTLSLILHVVCANLIEKLAMPRPGNSKGMLFGAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRERALAAKRKGADGGGXXXXXXXDPSAAERWRGGGTGGWSVEGFSDGGQQQQQQVSRTGQPGDVDTATITHYPDNIGVLNLLYFWFAPTLCYQPDYPRSAERHYRYILSLVVRLVIVGGAMSLISDQ 1422
            AS P H++ K S LS+ A   Q++ GL NL  ++L+  NSRLI  NL +YG+L          +L D P +   L+L    +CA L+EK A+      +  +  +EW ++ LH I     +   + V+ R   + + G A +  A  +W+KL+SYAH N DLR+  +                                    G   E F D                    ++I  YP NI + NL +F  APTLCYQ  YPR+      ++L  + +LVI  G M  I +Q
Sbjct:   75 ASYPTHRKLKESPLSSDAIFKQSHAGLFNLCIVVLIAVNSRLIIENLMKYGLLIQTGFWFSSKNLRDWPLLMCGLTLPFFPLCAFLVEKAAV------RNCI--SEWSIIFLHIIISTAEIFYPIYVIERCHSAVLSGVALMLYASTIWLKLVSYAHTNHDLRMLTKA-----------------------------------GEKAEAFVD--------------------SSIVEYPSNINLKNLTHFMVAPTLCYQTSYPRTTHIRKGWVLRQLGKLVIFTGVMGFIVEQ 304          
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Match: B8BTU5_THAPS (Diacylglycerol O-acyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTU5_THAPS)

HSP 1 Score: 117 bits (292), Expect = 6.070e-25
Identity = 95/288 (32.99%), Postives = 132/288 (45.83%), Query Frame = 1
Query:  538 YPASRPMHKEAKMSILSAGASSTQNYRGLLNLMAILLLVTNSRLIFANLRRYG-VLATAPTLNEPSDL-LDAPRIAGTLSLILHVVCANLIEK-LAMPRPGNSKGMLFGAEWPVLLLHGINIFLCLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAW-RERALAAKRKGADGGGXXXXXXXDPSAAERWRGGGTGGWSVEGFSDGGQQQQQQVSRTGQPGDVDTATITHYPDNIGVLNLLYFWFAPTLCYQPDYPRSAERHYRYILSLVVRLVI 1389
            YP S+PMH+++  S LS G S  QNYRGL NL+ ++L+++N RL+   + ++G +L    TL   S   LD P ++G L +   VV A  IEK L++   GN  GML         LH IN    LG+ +A+VW     P  G   +  A I W+KLISYAH N D R +   ++   A  K  D G                                     Q VS               YP N+ + ++ YFW APTL YQ  +PRS    +  + SL ++L I
Sbjct:   13 YPPSKPMHRQSNPSYLSDG-SHVQNYRGLFNLLLLILVLSNFRLLLDTVAQHGFILDKLATLQGFSQAPLDFPFVSGLLIVQAFVVGAYAIEKMLSVGLIGNQFGML---------LHVINSNATLGVVMAIVWYLIDQPFVGAGLIMQATITWLKLISYAHANYDYRTSPDTQKVTVALVKDLDDG-------------------------------------QNVS---------------YPQNVTLKDIYYFWLAPTLTYQIAFPRSPFIRWPKVFSLTLQLFI 238          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7756.18988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LJ48_9PHAE8.330e-21088.25Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LSK1_ECTSI3.620e-13082.76Acyl-CoA binding domain protein and partial Diacyl... [more]
D8LSK0_ECTSI1.760e-11887.68Diacylglycerol O-acyltransferase n=1 Tax=Ectocarpu... [more]
A0A7S3XU69_HETAK1.480e-3034.02O-acyltransferase n=1 Tax=Heterosigma akashiwo Tax... [more]
A0A348HAZ3_9CHLO1.850e-2932.80Diacylglycerol O-acyltransferase n=1 Tax=Coccomyxa... [more]
A0A836CDX9_9STRA4.450e-2840.38O-acyltransferase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A1E7F798_9STRA3.820e-2633.10Diacylglycerol O-acyltransferase n=1 Tax=Fragilari... [more]
I0YRH1_COCSC4.170e-2632.19O-acyltransferase n=1 Tax=Coccomyxa subellipsoidea... [more]
A0A0D6R6S9_ARACU4.600e-2529.69O-acyltransferase n=1 Tax=Araucaria cunninghamii T... [more]
B8BTU5_THAPS6.070e-2532.99Diacylglycerol O-acyltransferase (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7756contigEcto-sp13_S_contig7756:58..5843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score397.9
Seed ortholog evalue6.6e-108
Seed eggNOG ortholog2880.D8LSK1
Preferred nameacbp-6
Model size1422
KEGG koko:K08762
KEGG Pathwayko03320,map03320
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.acyl-coa-binding protein
EggNOG OGsCOG4281@1,KOG0817@2759
Cds size1422
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7756.18988.1prot_Ecto-sp13_S_contig7756.18988.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7756 58..5843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464045.3285973-CDS-Ecto-sp13_S_contig7756:57..1351681464045.3285973-CDS-Ecto-sp13_S_contig7756:57..135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7756 58..135 -
1681464045.3430455-CDS-Ecto-sp13_S_contig7756:919..10481681464045.3430455-CDS-Ecto-sp13_S_contig7756:919..1048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7756 920..1048 -
1681464045.354131-CDS-Ecto-sp13_S_contig7756:1541..18951681464045.354131-CDS-Ecto-sp13_S_contig7756:1541..1895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7756 1542..1895 -
1681464045.3652408-CDS-Ecto-sp13_S_contig7756:2521..26081681464045.3652408-CDS-Ecto-sp13_S_contig7756:2521..2608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7756 2522..2608 -
1681464045.37545-CDS-Ecto-sp13_S_contig7756:3164..32521681464045.37545-CDS-Ecto-sp13_S_contig7756:3164..3252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7756 3165..3252 -
1681464045.3855257-CDS-Ecto-sp13_S_contig7756:3800..39191681464045.3855257-CDS-Ecto-sp13_S_contig7756:3800..3919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7756 3801..3919 -
1681464045.3957686-CDS-Ecto-sp13_S_contig7756:4394..45841681464045.3957686-CDS-Ecto-sp13_S_contig7756:4394..4584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7756 4395..4584 -
1681464045.4082074-CDS-Ecto-sp13_S_contig7756:5175..54361681464045.4082074-CDS-Ecto-sp13_S_contig7756:5175..5436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7756 5176..5436 -
1681464045.419215-CDS-Ecto-sp13_S_contig7756:5727..58431681464045.419215-CDS-Ecto-sp13_S_contig7756:5727..5843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7756 5728..5843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7756.18988.1

>prot_Ecto-sp13_S_contig7756.18988.1 ID=prot_Ecto-sp13_S_contig7756.18988.1|Name=mRNA_Ecto-sp13_S_contig7756.18988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=474bp
QPRPEYHVFGLYLEGAMQRGPDAGVLLRLSTDKEDVAERWISTLGKVCAQ
EEDNSSPASSPCASEADQSEATSSACSSPVVTASMPPPPPPAQGLDSASR
MSRISSVRMSRKGSWDVAGGLENLKRLTQEVNIGRLDGDDTHERSGRVSD
QGVARDEQDKRKTMVKAKKKKKKKFEPTGYPASRPMHKEAKMSILSAGAS
STQNYRGLLNLMAILLLVTNSRLIFANLRRYGVLATAPTLNEPSDLLDAP
RIAGTLSLILHVVCANLIEKLAMPRPGNSKGMLFGAEWPVLLLHGINIFL
CLGIAVAVVWRSEGSPVFGFAYLFTAVILWMKLISYAHCNRDLRLAWRER
ALAAKRKGADGGGEGGDGGGDPSAAERWRGGGTGGWSVEGFSDGGQQQQQ
QVSRTGQPGDVDTATITHYPDNIGVLNLLYFWFAPTLCYQPDYPRSAERH
YRYILSLVVRLVIVGGAMSLISDQ
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mRNA from alignment at Ecto-sp13_S_contig7756:58..5843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7756.18988.1 ID=mRNA_Ecto-sp13_S_contig7756.18988.1|Name=mRNA_Ecto-sp13_S_contig7756.18988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7756:58..5843- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCTCGTCCTGAGTACCACGTGTTCGGCCTCTACCTGGAGGGGGCGAT GCAGAGGGGCCCCGATGCGGGGGTGCTGCTTCGCCTGAGCACCGACAAGG AGGATGTGGCGGAAAGGTAGGTACCTGCAAGTCTCGGGGTGTTGTCGGAT TCGCATCCCAAGTTTGTTGGTACTGCTGCTGCTGTTGTTGTTGTTCTTGT CCCTGTTGTTGTTGCTACTGGTGCTGTGATGGTGGTGGTACGGGTGATGG TGTTGGGGTGTCTTGACCATGATGACTCGTCCCTCAGAGAGGGTCTTCTC TCGTGCTTGCTGCTGCAAGCATGGTCGTCGCTGTGCCGTTGCCTCCGATA TACCACACCCCCAACCAAACAGCCCCCGCCCCCGCCCCCCACACCGAATT CCTCCAGGTGGATCTCCACCCTAGGGAAGGTCTGCGCCCAGGAGGAAGAC AACAGCTCTCCCGCCTCCTCTCCCTGCGCTTCGGAGGCTGACCAGTCAGA GGCCACGTCGTCGGCGTGCTCGTCGCCGGTGGTCACGGCGTCCATGCCTC CTCCGCCTCCGCCCGCACAGGGGTTGGACTCGGCGTCGCGCATGAGCCGG ATATCCTCGGTGAGGATGTCCCGGAAGGGCAGCTGGGACGTGGCGGGGGG GCTTGAAAACCTGAAGAGGTGAGAGAAAATCTGTGGCTGTTTTTTGGGGG GGAGGGGGGGGGAGAAGAGGGCGGGGAATTGTTAAAATGAGGGAGAAGGC GGGGGAGAGAGAGAGAGAGAGAGAGCCCACACAACCTTGCGTATGCATAC GTATGCACGACTGAGGCGTTTTCGTTGGTTGGCGGGTTTGTACGGGCGGT GCTACAGTTACAGAAGCACGTGCAGTCCCACTTCATGCTCTGTTGCTCAC GCTGTGAGGGTACCCCCCCTTCCTGCCCTGTTTTCCCCGCGGTGGAAGAA AAAGGGGAAAACAGCCGACCCGGCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCAGAAAATATATCGAGTCGTTCGCAGCTACCATCCGTGTGCAAAG CAGTAAGCGCCAGATGCAGAACACCCTCGCATCGCGCCCTCCATGCGACT CGTCGAAGACCTGATCGCGCTAGGTGGTGTGAGACCCTGATCCGGTTCAG GAACCCGGCGTGCTTCGTCCCGGCTTTGTAGGGATGCGAGGCGAATGGTC TAACGACTACGGGATGCATCACTTTGAGTACAGCCACCCCGCCCCCGTTG GTACCGAAGGTTGACCCAGGAGGTGAACATCGGGCGGTTAGACGGAGACG ACACCCATGAGCGCAGCGGGAGGGTCTCCGACCAAGGGGTAGCGAGGGAC GAGCAGGATAAGAGGAAGACGATGGTCAAGGCGAAGAAGAAGAAGAAGAA GAAGTTCGAGCCGACGGGATACCCGGCGAGCCGCCCGATGCACAAGGAGG TAAGCAAGGAGCGCCGTTTGGAGACTCAATGCAGATTTTTTAAGACATAG CACTGCCCATGCACAAGCAGGTAAGCAAGGAACACCGTTTTAAGACACGA CACAATTTTTAAGACACACAACCCTGCTGTTTTAAAACTATAAGCAGTTT TAGACGCAACACAGCTCACGAATTCGTTCCAAAGGGGTATGTGTTCAGTT GTATGGCAACCCTTGAGTGCCAGAACCTTTACACTGCAGCGAAGTCCCCG AGGCAGCACATGAGCACTGCCGTACGGCATCAATACTGTGCTTTTTTTTT GTGAAAGCGTCGCAATAGAAAACGCCGTTTTCCTCCCAAGCTATCGGCTT TCGTCATGGAGACCTTGACCTTCAGGAGAGACGCGGATATGCATGCGGTG ATGTGTTGTCTCATGAGCACGGCCCTACCCCCTGTGTACGACTCCCCCCC GCCCTCTCTTGTCCGAACGATCAGGCCAAGATGAGCATCTTGAGCGCCGG CGCCTCCTCGACACAGAACTACCGCGGCCTGCTGAACCTCATGGCCATCC TTCTTTTGGTGACCAACTCCCGCCTCATCTTCGCGAACCTTCGGTGGGTC CCCTCACCCCGTTCTTTCTTTTTGTGCAGCGTGTAAATATGCAGAGAACT TTTTTTTATTTTTTGTCTTCGCTTCTAATCAGCTCAACACATGGCGGCGG AAAACCACTTTGTTTCTTTTTTTGTCTTTTCCATCTCTTTTTGTCTTTTC ATCTCTTTGTTGTGATTCATGGTGGATGGCGGCACGTGTTTTTTTGCCGG TGACAAGGGAAAGACCCCTCTCTTCCGGACTTTTTTTGCCAGAGGGCCAG TCAGTCTTCGCTAGATCCTGAACGATCCCCATGTGCAATCACGGGATAAG GTATGTGGCTGCCGCTGCCATGTCCTTCTACCCCGCACCTATTCCGTCAG GGCCACCTATGTGATGGTTTAGAGTAGACTAGCTCCGTGCAGCGTGAATC CGCCCTCGCAACGAACTCCCTGCCACCCTCTGGCCGATTGCCGCCTTGCC ATCGGCGCTACTACTCGCACCGTCTTCCTACTGACGGCGGCCACAACTTG ATTGAACTCTCACGCATTTTTTTATTTATTTTTTTGCTCAGGCGGTACGG TGTGTTGGCGACCGCCCCGACGCTCAACGAGCCGAGCGACCTGTTGGACG CCCCTCGCATCGCCGGGACGCTGTCGCTGGTGAGTTGGTCAGCACCGCCA TCATGCAATCGTTCCGGTTGCTGCGTACCATCACGTGGGAGGCAGACGGG GTGGGTAGGTGGGTTGGCTCCGCTTAGAGCACACGCAGAGGTTGGGTTCC TTCTGATCGAGGCTGGGAAACAGGACGGAAGGGTGTGATCTCAAGCCCGT GGTTTGTTTAGGTCCTTACTCGCGTTAAAATAGCTCCGTTGGTTGTTCTT CGAAAGGAAAAGCTAGGGCCGAGAGAGATGGTGGGACAGACAAGGAGAGG GCAACACCGTGGGAGTCTTCCGGTGGTGGTGGTGGTGTTGGAATCTTCTT GTTGGGCTTGGTGCTGCTGGTGTCTAGCCCATTTGTCGGGCATCCTGCGG TCTTGGGGGGGGGAACTGTCTCTCCCGGTCTCTTTTGCCCCTGTCTACCT CTCCCTCCCTCGCCCCCCTCTCACCCCGCCCCGCCCCCCCCATCCTCCCT CACAATCGACTCCGCAACGCCGCCGCGCAAATATATCGAACAACGCCACC GCTGATGTCGACGACGACCACGACTACGACAACAGATCCTTCACGTCGTC TGCGCCAACCTGATCGAGAAGCTCGCCATGCCCAGGCCGGGGAACAGCAA GGGCATGCTCTTCGGCGCCGAGGTGAGGGAGGGGGCACGCAACCGCTATC GTGGGGTCCTGGAAGGCGCGTTGTCCTCGCCATCAGCCAGATGACGGTGG CGAGCGCGCGGGTGGTAGACAGGAGGGGTGGTAGACAGGAGTTCTCATCT TCTTGAGGGGAGCGTGTAAAATACTACAATATGTGTTTTTGATGACCGAC CACATGCTGTTCTTCTCCTTGCCTCCCTCGGTCAGTTCGTCCCCTTTTTG GTGTGTATTTGTTCACTTTTGGTTGGCGTCAACCGCGCTGTGTGTGCAGC CGGATGGGATGTTTTGGAAACTTGGTACGTGTAGCAACTCAAGAGTGTCA ACTGCCCGTTTACTCTGCCGGTGATCTAGCTTAAGACCCGCACACGCACG CTAGCCTAGCCTCCCCCATACGCGGTCCCAGATCAGCGCATTTGGAAACG CTGTCAGCCGCACTTGAGACTGCCGTCTTTTCATATTTGGCCAGCCGGTT AGCGCGGTGGATTAACAGCAAAGACACGTCCTCCTCCTCGCAAACGCGGC TGAGGCTGAAAGAATTACATGACAACCAAAACACACCTCTTCCTCCCCGC AAAAAAACGCGCTCTCGCGGTCGCGCGCGCGTGTGTGTGTGTGTGCAGTG GCCCGTGCTTCTGCTGCACGGAATCAACATCTTCCTCTGCCTGGGCATCG CGGTGGCCGTCGTTTGGCGGTCCGAGGGCTCCCCCGTCTTTGGCTTCGCC TACCTCTTCACGGCCGTCATCTTGTGGATGAAGCTAATCTCATACGCCCA CTGCAACCGCGACCTCCGCCTGGCCTGGCGAGAGAGGGCTCTCGCGGCCA AGAGAAAGGGGGCCGATGGAGGGGGGGAAGGTGGGGATGGGGGAGGGGAC CCTTCGGCGGCGGAGCGGTGGAGGGGGGGGGGCACGGGGGGGTGGAGCGT GGAGGGGTTTTCGGACGGGGGGCAGCAGCAGCAGCAGCAGGTGAGCAGAA CGGTACTGCATATAGAAAAAATACCAAGTCACAGCGGGCGGGCGGACGGG TGGGTGGCAGCAAGTACAGGTAAGCAGAATGACGTGCGTATGAAAATGGT AGCACGGACGGGGGGCAACAGCAGCGTGTACGCAGAATCGTACGCATGTA CAGAAATATTGAGAGGTGGCGTTTTGTAACGTCTGTTGTGGTCGTCATTG GTGGCGTCGCGATCATTTTTTCCTTGCCGGCTGAGAAGGTTTGTTTGGAC AGAATCGAGCGCTGGTTTGGTCGCTGTGGCAGGTCCGTATCGTGGAACCC GGCCGACCCCGCTCGCCAAGGGCCAAGCAAAGACAGACGCTCGCTTAAGT GGTGCACGGTCCACATGCCGCGCGGCTTTTTTTTCATGGTCGATTGAAAC TTTCCCTACCGATTCTCATCCTCTCTCTCTTCCCTCATATGACCGATCGC GTGTCTCTCGCGAAATAACGAATAATGACGAATATCATCTTCAAGGGTCA ACCCGGCGACGTCGACACGGCAACCATTACTCACTACCCGGACAACATCG GTGTCCTCAACCTGCTCTACTTCTGGTTTGCACCAACATTATGCTACCAG CCGGACTACCCGAGGTCCGCAGAGGTGTGTGCGATATTTGTCTGTCTGTC TGTCCTTCTGTCTGCTTGTCTTCCTGTCTGTCTGCCGTAATATCTTTCCG TTGCAGACAGACAGATGCGCAGAGAAAGAGAACGATGGACAAGGCGCATG CATCCAACACGCTTGACTAAAATGTGCCCGCCGAAAGAGGGTGCTAGAGA GGAGTTCCAGGCAACGTCGACACCGCTTCCCCCCACACCTCGTCGGACCT GGATAGTCCAGTTGGTAGCACAGCATTGACGCGAACCGGAAGTACTGTTT TTTATGACAAGTAATAATTAGAAACCATTACCTCGGGTTCGCCCCGACGC TGTGTTGCCAGACGGACTACCCCAGGTCCGAAGAGGTGTGTGGTTGAGAG GAAGTACCATGACGGCATCGATGTTGCCTCAACACCTCCCCAGCAGCCTC TCGCCGCGGGGATATGTGGCAGAGCGTGTTGGATGCATGCTCCTTGTGTG TCGTCTATTCCATGCGTGTTGCGCTGCCAATCTACATGTCAGTCCATTCG TGTGTCTACCTTTCAGCGGCTATGTTCCGGCCTGGCTAGCGGCTAGGTAA AGGACCCACGTTGTTTCGTGCGTGACGTTGGCTTCCTCAGACTCTGCCTT GTACTGCATGCTGCTCGGCCACGCACCCCAATTGTATTTTTTCTTCGCAT CGCTAACCGTGGCTGTTGGTTCATCGTTCCTGTTTCGTCGCCCCCCCAAT TCTGTCTGGTCGGGCTTGGCTCATCGGCACCCATCTATTTTTTTTTCTTG CGGTAAAGCGCCATTACCGGTATATCCTGTCCCTCGTTGTGAGGCTCGTC ATCGTGGGGGGCGCCATGAGCTTGATTTCCGACCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7756:58..5843-

>mRNA_Ecto-sp13_S_contig7756.18988.1 ID=mRNA_Ecto-sp13_S_contig7756.18988.1|Name=mRNA_Ecto-sp13_S_contig7756.18988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1422bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7756:58..5843- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCTCGTCCTGAGTACCACGTGTTCGGCCTCTACCTGGAGGGGGCGAT
GCAGAGGGGCCCCGATGCGGGGGTGCTGCTTCGCCTGAGCACCGACAAGG
AGGATGTGGCGGAAAGGTGGATCTCCACCCTAGGGAAGGTCTGCGCCCAG
GAGGAAGACAACAGCTCTCCCGCCTCCTCTCCCTGCGCTTCGGAGGCTGA
CCAGTCAGAGGCCACGTCGTCGGCGTGCTCGTCGCCGGTGGTCACGGCGT
CCATGCCTCCTCCGCCTCCGCCCGCACAGGGGTTGGACTCGGCGTCGCGC
ATGAGCCGGATATCCTCGGTGAGGATGTCCCGGAAGGGCAGCTGGGACGT
GGCGGGGGGGCTTGAAAACCTGAAGAGGTTGACCCAGGAGGTGAACATCG
GGCGGTTAGACGGAGACGACACCCATGAGCGCAGCGGGAGGGTCTCCGAC
CAAGGGGTAGCGAGGGACGAGCAGGATAAGAGGAAGACGATGGTCAAGGC
GAAGAAGAAGAAGAAGAAGAAGTTCGAGCCGACGGGATACCCGGCGAGCC
GCCCGATGCACAAGGAGGCCAAGATGAGCATCTTGAGCGCCGGCGCCTCC
TCGACACAGAACTACCGCGGCCTGCTGAACCTCATGGCCATCCTTCTTTT
GGTGACCAACTCCCGCCTCATCTTCGCGAACCTTCGGCGGTACGGTGTGT
TGGCGACCGCCCCGACGCTCAACGAGCCGAGCGACCTGTTGGACGCCCCT
CGCATCGCCGGGACGCTGTCGCTGATCCTTCACGTCGTCTGCGCCAACCT
GATCGAGAAGCTCGCCATGCCCAGGCCGGGGAACAGCAAGGGCATGCTCT
TCGGCGCCGAGTGGCCCGTGCTTCTGCTGCACGGAATCAACATCTTCCTC
TGCCTGGGCATCGCGGTGGCCGTCGTTTGGCGGTCCGAGGGCTCCCCCGT
CTTTGGCTTCGCCTACCTCTTCACGGCCGTCATCTTGTGGATGAAGCTAA
TCTCATACGCCCACTGCAACCGCGACCTCCGCCTGGCCTGGCGAGAGAGG
GCTCTCGCGGCCAAGAGAAAGGGGGCCGATGGAGGGGGGGAAGGTGGGGA
TGGGGGAGGGGACCCTTCGGCGGCGGAGCGGTGGAGGGGGGGGGGCACGG
GGGGGTGGAGCGTGGAGGGGTTTTCGGACGGGGGGCAGCAGCAGCAGCAG
CAGGTGAGCAGAACGGGTCAACCCGGCGACGTCGACACGGCAACCATTAC
TCACTACCCGGACAACATCGGTGTCCTCAACCTGCTCTACTTCTGGTTTG
CACCAACATTATGCTACCAGCCGGACTACCCGAGGTCCGCAGAGCGCCAT
TACCGGTATATCCTGTCCCTCGTTGTGAGGCTCGTCATCGTGGGGGGCGC
CATGAGCTTGATTTCCGACCAG
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