prot_Ecto-sp13_S_contig12260.1898.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12260.1898.1
Unique Nameprot_Ecto-sp13_S_contig12260.1898.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length148
Homology
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: A0A6H5JTN9_9PHAE (MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN9_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 3.860e-92
Identity = 134/147 (91.16%), Postives = 139/147 (94.56%), Query Frame = 0
Query:    1 MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPVC 147
            MLESFNADVSDNTFENNKYGVR SVGCADNVFSENTISNNSKYNAY+YLGSDEPDVVSSGRSQNNVFSQN F GA ETIKIKEADGTQFLDNVFE+GDADGLVVRFDDA  ++MKGNTGLDDGEFELKV NDSCFD ESDSGYEP+C
Sbjct:   46 MLESFNADVSDNTFENNKYGVRFSVGCADNVFSENTISNNSKYNAYSYLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDDATGNLMKGNTGLDDGEFELKVTNDSCFDEESDSGYEPLC 192          
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 282 bits (722), Expect = 3.700e-91
Identity = 137/147 (93.20%), Postives = 144/147 (97.96%), Query Frame = 0
Query:    1 MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPVC 147
            MLESFNADVS+NTFENNKYGVRMSVGCADNVFSEN ISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQN F+GAEETIKIKEADGTQFLDNVFE+GDADGLVVRFDDAMNS+M+GNTGLD+G+FELKV NDSCFDGESDSGYEPVC
Sbjct:  366 MLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYEPVC 512          
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 3.410e-85
Identity = 128/147 (87.07%), Postives = 141/147 (95.92%), Query Frame = 0
Query:    1 MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPVC 147
            MLESFNADVS+NTFENNKYGVR SVGCADNVFS NTISNN++YNAY+YLG+DEPDVVSSGRSQNNVFSQN F+GAEETIKIKEADGTQFLDNVFE+GDADGLVVRFD+A  ++M+GNTGLDDGEFELKV ND+CFDGE+DSGYEPVC
Sbjct:  362 MLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPVC 508          
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: A0A6H5KHR6_9PHAE (MEP22d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR6_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.130e-61
Identity = 92/106 (86.79%), Postives = 100/106 (94.34%), Query Frame = 0
Query:   42 KYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPVC 147
            +YNAY+YLGSDEPDVVSSGRSQNNVFSQN F GA ETIKIKEADGTQFLDNVFE+GDADGLVVRFD+A  ++M+GNTGLDDGEFELKV ND+CFDGESDSGYEPVC
Sbjct:   13 RYNAYSYLGSDEPDVVSSGRSQNNVFSQNSFAGAAETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATGNLMQGNTGLDDGEFELKVDNDACFDGESDSGYEPVC 118          
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.170e-54
Identity = 91/147 (61.90%), Postives = 114/147 (77.55%), Query Frame = 0
Query:    1 MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPVC 147
            ++ESFNADVS+N FE+NKYGVRMSVGCADNVFS+N IS++S+YN YTY GSD+P VV SGRSQ+N+FS N  TG +E+IK+  ADGT+F+DN F+        VRF+DA ++IM GNTGL  G   LKV   +CFD +SDS Y+PVC
Sbjct:  185 LMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFK----SAKTVRFEDAQDTIMSGNTGL--GSATLKVSKGACFDKKSDSDYKPVC 325          
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.410e-52
Identity = 86/146 (58.90%), Postives = 110/146 (75.34%), Query Frame = 0
Query:    1 MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPV 146
            M+ESFNADVSDN FENNKYGVR+SVGC  N+FS+N IS ++KYNAY+YLG+D PDVV SGRS++N F +N   G  ET+KI +ADGT+F+ N FE    D + +RFDDA  ++M GNTGL D +  LKV N + FD  +D G+EP+
Sbjct:  126 MMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFE----DAVTIRFDDAARTVMSGNTGLTDTK--LKVHNGASFDKRADYGFEPI 265          
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.750e-51
Identity = 89/147 (60.54%), Postives = 112/147 (76.19%), Query Frame = 0
Query:    1 MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPVC 147
            ++ESFNADVS+N FE+NKYGVR+SVGCADNVFS+N IS++SKYN YTY GSD+P VV SGRSQ+N+FS N  TG +E+IK+  ADGT+F+DN F+         RF+DA  ++M GNTGL  G   LKV   +CFD +SDS Y+PVC
Sbjct:  362 LMESFNADVSNNKFEDNKYGVRLSVGCADNVFSKNVISDSSKYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRA----KTARFEDAETTLMSGNTGL--GSATLKVSKGACFDKKSDSDYKPVC 502          
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.460e-47
Identity = 84/146 (57.53%), Postives = 109/146 (74.66%), Query Frame = 0
Query:    1 MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPV 146
            MLESFNADVSDNTFENNKYGVR+SVGC  N+FS+N I+ ++++N ++YLG+D+P+VV SGRSQ+NVF +N   G  E+I +KEADGTQF+DN F+    D   +RF DA  ++M GNTGL D    LKV   + FD  SD G+EP+
Sbjct:  333 MLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFK----DAAAIRFVDATKTLMSGNTGLADST--LKVDRGATFDESSDHGFEPI 472          
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.760e-46
Identity = 83/146 (56.85%), Postives = 106/146 (72.60%), Query Frame = 0
Query:    1 MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPV 146
            M+ESFNADVSDN FENNKYG+R SVG   NVF  N IS +++Y+ Y+YLGSD PDVV SGRSQ+NVF +N   G  E+IK+ +ADGTQF+DN FE    D   +RF+DA  ++M GN GL+  +  LKV+N + FD  SD G+EP+
Sbjct:  359 MMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFE----DATTIRFNDAKKTLMSGNIGLNMSK--LKVVNGASFDASSDYGFEPI 498          
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 164 bits (415), Expect = 1.330e-45
Identity = 81/147 (55.10%), Postives = 106/147 (72.11%), Query Frame = 0
Query:    1 MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDADGLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPVC 147
            ++E+FNADVS+N FE+NKYG+RMSVGCADNVFS+N I+ +SKYN YTY GSD P VV SGRSQ+        +G +ET+K+  ADGT+F+DN F+        +RF+D   ++M GN+GL  G   LKV + SCFD +SDS Y+PVC
Sbjct:  359 LMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVDSGRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFK----SAKTIRFEDCQGTLMSGNSGL--GGASLKVTDGSCFDKKSDSAYKPVC 499          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12260.1898.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JTN9_9PHAE3.860e-9291.16MEP5b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXE4_ECTSI3.700e-9193.20Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI3.410e-8587.07Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
A0A6H5KHR6_9PHAE1.130e-6186.79MEP22d protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
Q7XAJ9_9PHAE2.170e-5461.90Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAK0_9PHAE4.410e-5258.90Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAK2_9PHAE3.750e-5160.54Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]
Q7XAJ8_9PHAE1.460e-4757.53Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE1.760e-4656.85Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
A8CEP1_SACJA1.330e-4555.10Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 1..126
e-value: 8.0E-8
score: 33.9
IPR011459Domain of unknown function DUF1565PFAMPF07602DUF1565coord: 2..75
e-value: 2.3E-4
score: 20.6
IPR022441Parallel beta-helix repeat-2TIGRFAMTIGR03804TIGR03804coord: 4..41
e-value: 2.9E-6
score: 24.8
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 6..121

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12260contigEcto-sp13_S_contig12260:3764..4794 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12260.1898.1mRNA_Ecto-sp13_S_contig12260.1898.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12260 2138..5090 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12260.1898.1 ID=prot_Ecto-sp13_S_contig12260.1898.1|Name=mRNA_Ecto-sp13_S_contig12260.1898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MLESFNADVSDNTFENNKYGVRMSVGCADNVFSENTISNNSKYNAYTYLG
SDEPDVVSSGRSQNNVFSQNVFTGAEETIKIKEADGTQFLDNVFEIGDAD
GLVVRFDDAMNSIMKGNTGLDDGEFELKVINDSCFDGESDSGYEPVC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011459DUF1565
IPR022441Para_beta_helix_rpt-2
IPR011050Pectin_lyase_fold/virulence