prot_Ecto-sp13_S_contig7748.18982.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7748.18982.1
Unique Nameprot_Ecto-sp13_S_contig7748.18982.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length134
Homology
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 9.250e-73
Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 0
Query:    1 AVAATVPGVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVPMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 134
            AVA T PG LPHPHLGDHASVCG+TLAAQLTPG+VIDQLLVLEVDKMGVPMVT+KPLLLS VARSGEDKE FVPGAAS+VSPGDLIAGYVCRVESFGVF+RFLGRFTALCPRSMAADR VEDP GMFEEGDSAR
Sbjct:  814 AVATTAPGFLPHPHLGDHASVCGQTLAAQLTPGTVIDQLLVLEVDKMGVPMVTLKPLLLSAVARSGEDKEAFVPGAASNVSPGDLIAGYVCRVESFGVFVRFLGRFTALCPRSMAADRMVEDPSGMFEEGDSAR 947          
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 8.470e-70
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 0
Query:    1 AVAATVPGVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVPMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 134
            AVAATV GVLP+PHLGDHASVCG+TLAA+LTPG+VIDQLLVLEVDKMG PMVT+KPLLLS VARSGEDKE F+PGA SDV+PGDLIAGYV RVESFGVF+RFLGRFTALCPRSMAADR V+DPRGMFEEGDSAR
Sbjct:  867 AVAATVRGVLPYPHLGDHASVCGKTLAAELTPGTVIDQLLVLEVDKMGTPMVTLKPLLLSAVARSGEDKEAFMPGATSDVTPGDLIAGYVIRVESFGVFVRFLGRFTALCPRSMAADRMVQDPRGMFEEGDSAR 1000          
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: L1JFG5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JFG5_GUITC)

HSP 1 Score: 83.2 bits (204), Expect = 6.250e-16
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 0
Query:    8 GVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVPMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 134
            G LP PHL DH+++       QL P + +  L++  +      +VT+KP LLS V      +E   P + + + P   + GYV  V+S GVF+RFLGR TAL P S  A   V+DP+ +FEEG S R
Sbjct:  710 GFLPRPHLADHSNLAALAFQ-QLQPEARLTCLVLDLLANKSRYLVTVKPSLLSAV------REENFPSSLAQLHPQQFLQGYVFSVKSCGVFVRFLGRLTALAPSSSLAAGHVDDPQSLFEEGQSVR 829          
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: W7TCI2_9STRA (Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCI2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.570e-14
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 0
Query:    4 ATVPGVLPHPH-LGDHASVCGETLAAQLTPGSVIDQLLVLEVDK-MGVPMVTMKPLLLST---VARSGEDKEVFV--------PGAASDVSPGDL-IAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 134
            +T P    H H LGDHA++  + LA +   G  I+  LVLE  +    P++++KPLL+     +     D ++          P    D+  G   + GY+ RVESFG+F+RF+G  TA+ PR++ ADR V+D  G+F EGDS R
Sbjct:  816 STEPLAFLHKHQLGDHAALADQFLA-RTKMGDRIESALVLEFRRDSNEPLLSLKPLLVRAGGGIVDQAPDSKLAAKKGPCFAKPPRLQDLKIGRARLCGYISRVESFGLFVRFVGGQTAMAPRALIADRFVDDASGLFREGDSVR 959          
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A7S3HNU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNU2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.380e-13
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 0
Query:   48 GVPMVTMKPLLLSTV---ARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 134
            GV  +T+KPLL+      A S + + + VP   +D++PG ++AGYV +V++FGV + F G  TAL PR   AD+    P G+F  GDS R
Sbjct:  118 GVANITVKPLLVFAAKNKAHSADAESLAVPNKVADLTPGQVVAGYVVKVDTFGVIVCFRGSLTALVPRPNIADKFTPTPVGLFTAGDSVR 207          
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A7S2CXE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXE6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.310e-9
Identity = 48/141 (34.04%), Postives = 67/141 (47.52%), Query Frame = 0
Query:   10 LPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMG----VPMVTMKPLLLSTVARSGEDKE--------------VFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDS 132
            LP  HLGD  ++   T A  L  G+ +  LL+L     G    + +VT KPL                           + +P    D+  GD++AG+V  VE+FGVF++     T L PR+  ADR VEDPR +F+ GDS
Sbjct:  790 LPLSHLGDLTTLAVSTPAPAL--GTKVKDLLLLGGSFPGARASLSLVTKKPLXXXXXXXXXXXXXXXXXXXXXXXXXXTLMLPRRMEDIGAGDVVAGFVRAVEAFGVFVQCANGLTGLVPRTSLADRFVEDPRPLFQVGDS 928          
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A137PIL3_CONC2 (TPR-like protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PIL3_CONC2)

HSP 1 Score: 64.7 bits (156), Expect = 1.820e-9
Identity = 41/125 (32.80%), Postives = 61/125 (48.80%), Query Frame = 0
Query:    8 GVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVPMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDS 132
            G LPH HL DH S+     +   +  S ++ LLV++       +++ K LLL  V +SG      +P        GD + GY+  +  +GVF+ FLG F+A C     AD  V  P+ +F  G S
Sbjct:  715 GFLPHSHLSDHLSLNSLAASNVYSVSSELENLLVVQKTPGKGLLLSKKDLLLKGV-KSGN-----LPHNIESTKVGDFVVGYISSIYDYGVFVNFLGDFSAFCFLKELADTHVTSPKSLFTLGQS 833          
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A2J6Q766_9HELO (Nucleic acid-binding protein n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6Q766_9HELO)

HSP 1 Score: 57.8 bits (138), Expect = 4.750e-7
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 0
Query:   68 DKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLG--RFTALCPRSMAADRKVEDPRGMFEEGDSAR 134
            DK   VP + SD+  G +I G + +VE FGVF+   G  + + LC RS  A+++VED + ++EEGDS +
Sbjct: 1301 DKHYVVPISFSDIKVGQVITGKIRKVEEFGVFILIDGSDKVSGLCHRSEMAEKRVEDVKKLYEEGDSVK 1369          
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A7S0CY38_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CY38_MICPS)

HSP 1 Score: 57.0 bits (136), Expect = 8.040e-7
Identity = 40/109 (36.70%), Postives = 53/109 (48.62%), Query Frame = 0
Query:    8 GVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGV---PMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRS 113
            G +   H+ DH    G  L   L  G  I  ++VLE  K G     +++ K  L+S  +R        +P   +DV+ G    GYV  V S GVF+RFLGR T LCP S
Sbjct:  259 GAITAAHVSDHPET-GAALLGTLKTGDEIGPVVVLESGKPGKGRRAVLSRKQTLVSFASREA------LPETVADVAVGASYPGYVASVASGGVFVRFLGRLTGLCPPS 360          
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: V5F7C2_BYSSN (rRNA biogenesis protein RRP5, putative n=2 Tax=Byssochlamys spectabilis TaxID=264951 RepID=V5F7C2_BYSSN)

HSP 1 Score: 54.3 bits (129), Expect = 7.670e-6
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 0
Query:   74 PGAASDVSPGDLIAGYVCRVESFGVFLRFLG--RFTALCPRSMAADRKVEDPRGMFEEGD 131
            P    D+ PG ++ G V +VE FG F+   G    + LC RS  ADRK+ED R +FEEGD
Sbjct: 1309 PITIRDLKPGQIVTGKVRKVEEFGAFIVVDGSRNVSGLCHRSEMADRKIEDARKLFEEGD 1368          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FRR9_ECTSI9.250e-7391.04rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
A0A6H5LPP1_9PHAE8.470e-7088.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L1JFG5_GUITC6.250e-1640.16Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
W7TCI2_9STRA3.570e-1437.24Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidace... [more]
A0A7S3HNU2_9STRA7.380e-1342.22Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2CXE6_9STRA1.310e-934.04Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A137PIL3_CONC21.820e-932.80TPR-like protein n=1 Tax=Conidiobolus coronatus (s... [more]
A0A2J6Q766_9HELO4.750e-742.03Nucleic acid-binding protein n=1 Tax=Hyaloscypha h... [more]
A0A7S0CY38_MICPS8.040e-736.70Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
V5F7C2_BYSSN7.670e-646.67rRNA biogenesis protein RRP5, putative n=2 Tax=Bys... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 75..134
e-value: 1.7E-9
score: 39.3
NoneNo IPR availablePANTHERPTHR23270PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5coord: 5..132
IPR003029S1 domainPFAMPF00575S1coord: 82..131
e-value: 2.4E-4
score: 21.4
IPR003029S1 domainPROSITEPS50126S1coord: 83..134
score: 12.237
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 77..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7748contigEcto-sp13_S_contig7748:1731..2132 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7748.18982.1mRNA_Ecto-sp13_S_contig7748.18982.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7748 1731..2132 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7748.18982.1 ID=prot_Ecto-sp13_S_contig7748.18982.1|Name=mRNA_Ecto-sp13_S_contig7748.18982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
AVAATVPGVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVP
MVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFL
RFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003029S1_domain
IPR012340NA-bd_OB-fold