mRNA_Ecto-sp13_S_contig7748.18982.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7748.18982.1
Unique NamemRNA_Ecto-sp13_S_contig7748.18982.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: D7FRR9_ECTSI (rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR9_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 9.250e-73
Identity = 122/134 (91.04%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 AVAATVPGVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVPMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 402
            AVA T PG LPHPHLGDHASVCG+TLAAQLTPG+VIDQLLVLEVDKMGVPMVT+KPLLLS VARSGEDKE FVPGAAS+VSPGDLIAGYVCRVESFGVF+RFLGRFTALCPRSMAADR VEDP GMFEEGDSAR
Sbjct:  814 AVATTAPGFLPHPHLGDHASVCGQTLAAQLTPGTVIDQLLVLEVDKMGVPMVTLKPLLLSAVARSGEDKEAFVPGAASNVSPGDLIAGYVCRVESFGVFVRFLGRFTALCPRSMAADRMVEDPSGMFEEGDSAR 947
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A6H5LPP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPP1_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 8.470e-70
Identity = 118/134 (88.06%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 AVAATVPGVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVPMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 402
            AVAATV GVLP+PHLGDHASVCG+TLAA+LTPG+VIDQLLVLEVDKMG PMVT+KPLLLS VARSGEDKE F+PGA SDV+PGDLIAGYV RVESFGVF+RFLGRFTALCPRSMAADR V+DPRGMFEEGDSAR
Sbjct:  867 AVAATVRGVLPYPHLGDHASVCGKTLAAELTPGTVIDQLLVLEVDKMGTPMVTLKPLLLSAVARSGEDKEAFMPGATSDVTPGDLIAGYVIRVESFGVFVRFLGRFTALCPRSMAADRMVQDPRGMFEEGDSAR 1000
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: L1JFG5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JFG5_GUITC)

HSP 1 Score: 83.2 bits (204), Expect = 6.250e-16
Identity = 51/127 (40.16%), Postives = 71/127 (55.91%), Query Frame = 1 
Query:   22 GVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVPMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 402
            G LP PHL DH+++       QL P + +  L++  +      +VT+KP LLS V      +E   P + + + P   + GYV  V+S GVF+RFLGR TAL P S  A   V+DP+ +FEEG S R
Sbjct:  710 GFLPRPHLADHSNLAALAFQ-QLQPEARLTCLVLDLLANKSRYLVTVKPSLLSAV------REENFPSSLAQLHPQQFLQGYVFSVKSCGVFVRFLGRLTALAPSSSLAAGHVDDPQSLFEEGQSVR 829
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: W7TCI2_9STRA (Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCI2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.570e-14
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = 1 
Query:   10 ATVPGVLPHPH-LGDHASVCGETLAAQLTPGSVIDQLLVLEVDK-MGVPMVTMKPLLLST---VARSGEDKEVFV--------PGAASDVSPGDL-IAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 402
            +T P    H H LGDHA++  + LA +   G  I+  LVLE  +    P++++KPLL+     +     D ++          P    D+  G   + GY+ RVESFG+F+RF+G  TA+ PR++ ADR V+D  G+F EGDS R
Sbjct:  816 STEPLAFLHKHQLGDHAALADQFLA-RTKMGDRIESALVLEFRRDSNEPLLSLKPLLVRAGGGIVDQAPDSKLAAKKGPCFAKPPRLQDLKIGRARLCGYISRVESFGLFVRFVGGQTAMAPRALIADRFVDDASGLFREGDSVR 959
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A7S3HNU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNU2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.380e-13
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:  142 GVPMVTMKPLLLSTV---ARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR 402
            GV  +T+KPLL+      A S + + + VP   +D++PG ++AGYV +V++FGV + F G  TAL PR   AD+    P G+F  GDS R
Sbjct:  118 GVANITVKPLLVFAAKNKAHSADAESLAVPNKVADLTPGQVVAGYVVKVDTFGVIVCFRGSLTALVPRPNIADKFTPTPVGLFTAGDSVR 207
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A7S2CXE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXE6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.310e-9
Identity = 48/141 (34.04%), Postives = 67/141 (47.52%), Query Frame = 1 
Query:   28 LPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMG----VPMVTMKPLLLSTVARSGEDKE--------------VFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDS 396
            LP  HLGD  ++   T A  L  G+ +  LL+L     G    + +VT KPL                           + +P    D+  GD++AG+V  VE+FGVF++     T L PR+  ADR VEDPR +F+ GDS
Sbjct:  790 LPLSHLGDLTTLAVSTPAPAL--GTKVKDLLLLGGSFPGARASLSLVTKKPLXXXXXXXXXXXXXXXXXXXXXXXXXXTLMLPRRMEDIGAGDVVAGFVRAVEAFGVFVQCANGLTGLVPRTSLADRFVEDPRPLFQVGDS 928
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A137PIL3_CONC2 (TPR-like protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PIL3_CONC2)

HSP 1 Score: 64.7 bits (156), Expect = 1.820e-9
Identity = 41/125 (32.80%), Postives = 61/125 (48.80%), Query Frame = 1 
Query:   22 GVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVPMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRSMAADRKVEDPRGMFEEGDS 396
            G LPH HL DH S+     +   +  S ++ LLV++       +++ K LLL  V +SG      +P        GD + GY+  +  +GVF+ FLG F+A C     AD  V  P+ +F  G S
Sbjct:  715 GFLPHSHLSDHLSLNSLAASNVYSVSSELENLLVVQKTPGKGLLLSKKDLLLKGV-KSGN-----LPHNIESTKVGDFVVGYISSIYDYGVFVNFLGDFSAFCFLKELADTHVTSPKSLFTLGQS 833
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A2J6Q766_9HELO (Nucleic acid-binding protein n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6Q766_9HELO)

HSP 1 Score: 57.8 bits (138), Expect = 4.750e-7
Identity = 29/69 (42.03%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  202 DKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLG--RFTALCPRSMAADRKVEDPRGMFEEGDSAR 402
            DK   VP + SD+  G +I G + +VE FGVF+   G  + + LC RS  A+++VED + ++EEGDS +
Sbjct: 1301 DKHYVVPISFSDIKVGQVITGKIRKVEEFGVFILIDGSDKVSGLCHRSEMAEKRVEDVKKLYEEGDSVK 1369
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: A0A7S0CY38_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CY38_MICPS)

HSP 1 Score: 57.0 bits (136), Expect = 8.040e-7
Identity = 40/109 (36.70%), Postives = 53/109 (48.62%), Query Frame = 1 
Query:   22 GVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGV---PMVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFLRFLGRFTALCPRS 339
            G +   H+ DH    G  L   L  G  I  ++VLE  K G     +++ K  L+S  +R        +P   +DV+ G    GYV  V S GVF+RFLGR T LCP S
Sbjct:  259 GAITAAHVSDHPET-GAALLGTLKTGDEIGPVVVLESGKPGKGRRAVLSRKQTLVSFASREA------LPETVADVAVGASYPGYVASVASGGVFVRFLGRLTGLCPPS 360
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BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Match: V5F7C2_BYSSN (rRNA biogenesis protein RRP5, putative n=2 Tax=Byssochlamys spectabilis TaxID=264951 RepID=V5F7C2_BYSSN)

HSP 1 Score: 54.3 bits (129), Expect = 7.670e-6
Identity = 28/60 (46.67%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:  220 PGAASDVSPGDLIAGYVCRVESFGVFLRFLG--RFTALCPRSMAADRKVEDPRGMFEEGD 393
            P    D+ PG ++ G V +VE FG F+   G    + LC RS  ADRK+ED R +FEEGD
Sbjct: 1309 PITIRDLKPGQIVTGKVRKVEEFGAFIVVDGSRNVSGLCHRSEMADRKIEDARKLFEEGD 1368
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7748.18982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FRR9_ECTSI9.250e-7391.04rRNA biogenesis protein rrp5 n=1 Tax=Ectocarpus si... [more]
A0A6H5LPP1_9PHAE8.470e-7088.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
L1JFG5_GUITC6.250e-1640.16Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
W7TCI2_9STRA3.570e-1437.24Rrna biogenesis protein rrp5 n=3 Tax=Monodopsidace... [more]
A0A7S3HNU2_9STRA7.380e-1342.22Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2CXE6_9STRA1.310e-934.04Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A137PIL3_CONC21.820e-932.80TPR-like protein n=1 Tax=Conidiobolus coronatus (s... [more]
A0A2J6Q766_9HELO4.750e-742.03Nucleic acid-binding protein n=1 Tax=Hyaloscypha h... [more]
A0A7S0CY38_MICPS8.040e-736.70Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
V5F7C2_BYSSN7.670e-646.67rRNA biogenesis protein RRP5, putative n=2 Tax=Bys... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7748contigEcto-sp13_S_contig7748:1731..2132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score246.5
Seed ortholog evalue7e-63
Seed eggNOG ortholog2880.D7FRR9
Preferred nameRRP5
Model size402
KEGG koko:K14792,ko:K20353
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009553,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG0539@1,KOG1070@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-08_000050.1
Cds size402
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464044.6636236-CDS-Ecto-sp13_S_contig7748:1730..21321681464044.6636236-CDS-Ecto-sp13_S_contig7748:1730..2132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7748 1731..2132 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7748.18982.1prot_Ecto-sp13_S_contig7748.18982.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7748 1731..2132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7748.18982.1

>prot_Ecto-sp13_S_contig7748.18982.1 ID=prot_Ecto-sp13_S_contig7748.18982.1|Name=mRNA_Ecto-sp13_S_contig7748.18982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
AVAATVPGVLPHPHLGDHASVCGETLAAQLTPGSVIDQLLVLEVDKMGVP
MVTMKPLLLSTVARSGEDKEVFVPGAASDVSPGDLIAGYVCRVESFGVFL
RFLGRFTALCPRSMAADRKVEDPRGMFEEGDSAR
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mRNA from alignment at Ecto-sp13_S_contig7748:1731..2132-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7748.18982.1 ID=mRNA_Ecto-sp13_S_contig7748.18982.1|Name=mRNA_Ecto-sp13_S_contig7748.18982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7748:1731..2132- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTAGCCGCGACCGTGCCGGGGGTCCTCCCGCACCCCCACCTGGGCGA
CCACGCCTCCGTGTGCGGGGAGACCCTTGCGGCGCAATTGACCCCCGGGT
CTGTCATCGACCAGCTCCTGGTGCTCGAAGTCGACAAGATGGGGGTGCCC
ATGGTGACCATGAAGCCTCTTCTGCTGTCGACCGTCGCGCGCAGTGGGGA
AGACAAGGAGGTGTTTGTTCCAGGGGCTGCGTCTGACGTGTCCCCTGGGG
ACCTGATCGCCGGATACGTGTGCCGGGTGGAGTCGTTCGGGGTCTTCTTG
AGGTTCTTGGGCAGGTTTACGGCGCTGTGCCCTCGATCCATGGCGGCGGA
CCGGAAGGTGGAAGACCCTCGTGGGATGTTCGAGGAAGGCGACAGCGCTA
GG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7748:1731..2132-

>mRNA_Ecto-sp13_S_contig7748.18982.1 ID=mRNA_Ecto-sp13_S_contig7748.18982.1|Name=mRNA_Ecto-sp13_S_contig7748.18982.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7748:1731..2132- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTAGCCGCGACCGTGCCGGGGGTCCTCCCGCACCCCCACCTGGGCGA
CCACGCCTCCGTGTGCGGGGAGACCCTTGCGGCGCAATTGACCCCCGGGT
CTGTCATCGACCAGCTCCTGGTGCTCGAAGTCGACAAGATGGGGGTGCCC
ATGGTGACCATGAAGCCTCTTCTGCTGTCGACCGTCGCGCGCAGTGGGGA
AGACAAGGAGGTGTTTGTTCCAGGGGCTGCGTCTGACGTGTCCCCTGGGG
ACCTGATCGCCGGATACGTGTGCCGGGTGGAGTCGTTCGGGGTCTTCTTG
AGGTTCTTGGGCAGGTTTACGGCGCTGTGCCCTCGATCCATGGCGGCGGA
CCGGAAGGTGGAAGACCCTCGTGGGATGTTCGAGGAAGGCGACAGCGCTA
GG
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