mRNA_Ecto-sp13_S_contig77377.18972.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig77377.18972.1
Unique NamemRNA_Ecto-sp13_S_contig77377.18972.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig77377.18972.1 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.590e-26
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 1 
Query:    1 KPDPWLAGTAPECTTALVMSKDAARLDRLSFGCPNLDAAFEGGVRVQGITEV 156
            KPDPWLAGTAPECTTAL MSKDAARLDRLSFGCP+LDAAFEGGVRVQG+TE+
Sbjct:   48 KPDPWLAGTAPECTTALAMSKDAARLDRLSFGCPSLDAAFEGGVRVQGVTEI 99
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BLAST of mRNA_Ecto-sp13_S_contig77377.18972.1 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.370e-24
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 KPDPWLAGTAPECTTALVMSKDAARLDRLSFGCPNLDAAFEGGVRVQGITEV 156
            KPDPWLAGTAPECTTAL M K+AARLDRLSFGCP+LDAAFEGGVRVQGITE+
Sbjct:   48 KPDPWLAGTAPECTTALAMLKNAARLDRLSFGCPSLDAAFEGGVRVQGITEI 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig77377.18972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGE7_ECTSI1.590e-2692.31RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KY82_9PHAE1.370e-2490.38RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig77377contigEcto-sp13_S_contig77377:459..614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score106.7
Seed ortholog evalue3.4e-21
Seed eggNOG ortholog2880.D8LGE7
Preferred nameXRCC3
Model size156
KEGG koko:K10880
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0042148,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0065003,GO:0065004,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
Exons1
EggNOG free text desc.meiotic DNA recombinase assembly
EggNOG OGsCOG0468@1,KOG1564@2759
Cds size156
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464043.8473113-CDS-Ecto-sp13_S_contig77377:458..6141681464043.8473113-CDS-Ecto-sp13_S_contig77377:458..614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig77377 459..614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig77377.18972.1prot_Ecto-sp13_S_contig77377.18972.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig77377 459..614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig77377.18972.1

>prot_Ecto-sp13_S_contig77377.18972.1 ID=prot_Ecto-sp13_S_contig77377.18972.1|Name=mRNA_Ecto-sp13_S_contig77377.18972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
KPDPWLAGTAPECTTALVMSKDAARLDRLSFGCPNLDAAFEGGVRVQGIT
EV
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mRNA from alignment at Ecto-sp13_S_contig77377:459..614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig77377.18972.1 ID=mRNA_Ecto-sp13_S_contig77377.18972.1|Name=mRNA_Ecto-sp13_S_contig77377.18972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77377:459..614+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCCTGACCCCTGGCTCGCGGGCACGGCGCCCGAGTGCACGACCGCGCT
GGTCATGTCGAAAGACGCGGCGAGGTTGGACAGGCTGTCGTTCGGGTGCC
CCAACCTCGACGCGGCTTTCGAAGGAGGGGTTCGGGTGCAGGGCATCACG
GAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig77377:459..614+

>mRNA_Ecto-sp13_S_contig77377.18972.1 ID=mRNA_Ecto-sp13_S_contig77377.18972.1|Name=mRNA_Ecto-sp13_S_contig77377.18972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig77377:459..614+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCCTGACCCCTGGCTCGCGGGCACGGCGCCCGAGTGCACGACCGCGCT
GGTCATGTCGAAAGACGCGGCGAGGTTGGACAGGCTGTCGTTCGGGTGCC
CCAACCTCGACGCGGCTTTCGAAGGAGGGGTTCGGGTGCAGGGCATCACG
GAGGTG
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